BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79040.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477073 jgi|Araly1|477073|fgenesh2_kg.2__2203__AT1G79040.1 948 0.0
> Ahg477073 jgi|Araly1|477073|fgenesh2_kg.2__2203__AT1G79040.1
Length=661
Score = 948 bits (513), Expect = 0.0
Identities = 592/629 (94%), Gaps = 10/629 (2%)
Strand=Plus/Plus
Query 35 GAGAAGAATAGTTTGATCATCTTGTGAGAAAAATAATGGCTGCTTCAGTGATGCTATCTT 94
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 3 GAGAATAATAGTTTGATCATCTTGTGAG-AAAATAATGGCTGCTTCAGTGATGCTTTCAT 61
Query 95 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCTAGAGGATTACCGT 154
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCCAGAGGATTACCGT 121
Query 155 CGCTCACAAGAGCTCGTCCCTCCTTCAAAATTGTCGCCAGTGGCGTCAAGAAGATCAAGA 214
|||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 122 CGCTAACAAGAGCTCGTCCCTCCTTCAAAATCGTCGCCAGTGGCGGCAAGAAGATCAAGA 181
Query 215 CCGACAAGCCCT-TCGGAATTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 273
|||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 182 CCGACAAGCCCTAT-GGAATCAACGGTAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 240
Query 274 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAGTACGTCGACAAGTATGGAGCTAACGTC 333
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAATACGTCGACAAGTATGGAGCTAACGTC 300
Query 334 GATGGATACAGTCCTATTTACAACGAGAACGAGTGGTCAGCGAGTGGTGACGTGTACAAG 393
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GATGGATACAGTCCTATTTACAACGAGAACGATTGGTCAGCGAGTGGTGACGTGTACAAG 360
Query 394 GGAGGAGTCACCGGATTGGCAATTTGGGCGGTAACTCTCGCCGGAATTCTTGCCGGAGGT 453
||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 361 GGAGGAGCCACCGGATTGGCTATTTGGGCGGTTACTCTCGCCGGTATTCTCGCCGGAGGA 420
Query 454 GCTCTTCTTGTGTACAACACAAGTGCTTTGGCTCAGTAAATCTTAAAGTTGTTAGCGCAT 513
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 421 GCTCTTCTTGTGTACAACACCAGTGCGTTGGCTCAGTAAATCTTTAAGTTGTTAGCGCAT 480
Query 514 GTGTAATCATGTTTCTATAAATGT-T--TCTGTGTTGTT---CTCTTTCTCTCTAATGTT 567
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 481 GTGTAATCATGTTTCTATAAATGTGTCGTCTGTGTTGTTGTTCTCTTTCTCTCTAATGTT 540
Query 568 GTAAAACTCAGACATACTTTGAA-TTTATAAGACTTCTAGTGTTTGTATATATATTCATC 626
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAAAACTCAGAAATACTTTCAAATTTATAAGACTTCTAGTGTTTGTATATATATTCATC 600
Query 627 TTCCTATCCTTTATGATTTCCATGCACAA 655
||||| | |||| ||||||| ||||||||
Sbjct 601 TTCCTCTTCTTTGTGATTTCGATGCACAA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5