BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79060.1
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1 1557 0.0
> Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1
Length=1736
Score = 1557 bits (843), Expect = 0.0
Identities = 1066/1170 (91%), Gaps = 30/1170 (3%)
Strand=Plus/Plus
Query 58 ctctctcGTTTGGATCTGGCCGTTGATTTTCTCCCGACGGCGATAAGTTTGTTGCATGAA 117
||||||| |||||||||||||||||||||| || ||||||||||||| | |||||||||
Sbjct 39 CTCTCTCTTTTGGATCTGGCCGTTGATTTTTTCGGGACGGCGATAAGTAT-TTGCATGAA 97
Query 118 CGCCGGTGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGATTTTCCTACTT 177
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 98 CGCCGGAGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGAGTTTCCTACTT 157
Query 178 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGACGACGGTGGTCGGAGTTCTGGAT 237
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 158 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGAGGATGGTGGTCGGACTTCTGGAT 217
Query 238 CCGTCGCATCGGAGATTCCGAAGGAGGAAACAGCAGTCGGAGCTGGTGATTTCGAGTTTA 297
||| |||||| ||||||| |||| ||||||| | ||||||||||||||||||||||||||
Sbjct 218 CCGCCGCATCAGAGATTCAGAAGAAGGAAACCGTAGTCGGAGCTGGTGATTTCGAGTTTA 277
Query 298 GGTTAGAGGAGGATCCAGTCGGAATGCTCCCAGCCGATGAGCTTTTCTCCGACGGTAAA- 356
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 278 GGTTGGAGGAGGATCCAGTCGGAATGCTCCCAGCCGACGAGCTTTTCTCCGACGG-AAAG 336
Query 357 CTCGTGACGAAGCAGCAACAACAACAGACGACGGAGATCGGCGGGAAATGCAGGAGGATG 416
||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 337 CTCGTGACGAAGCAG---CAACAACGGACGGTGGAGACCGGCGGGAAATGCAGGAGGATG 393
Query 417 GAAGTCGTGGAGATTGAGATCTCCGGGGGTGGCGATAATTGCTCGTTTTCTCCAAAGGCG 476
||||| |||||||| |||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 394 GAAGTGGTGGAGATGGAGATCGCCGGTGGTGGCGATATTTGCTCGTTTTCTCCAAAGGCG 453
Query 477 CCACGGTGTTCAAGTAGATGGAGGGACTTGTTAGGACTCAAACGATTCTCTCAGAATAGC 536
|| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 454 CCTCGGTGTTCGAGTAGATGGAGGGACTTGTTAGGGCTTAAACGATTCTCTCAGAAT--- 510
Query 537 AGCAAATCCGCGTCGACTGcgacgacgacgacgacgaATCCGAGATCGTCAACTTCGTCG 596
|||||| ||||||||| |||||| | | |||||||||||||||| |||||||||
Sbjct 511 AGCAAAGCCGCGTCGA---CGACGA-TTC--CTTCGAATCCGAGATCGTCTACTTCGTCG 564
Query 597 TTGAAACAGTTCTTGCATCGGAGCTCCAGGTCCTCGTCGTCCTCTTCAGATGCTTCGTTA 656
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 565 TTGAAACAATTCTTGCATCGTAGCTCCAGATCCTCGTCGTCCTCTTCAGATGCTTCGTTG 624
Query 657 CTCATGAGTCTTCCTCTCCTCAAAGATTCCGATTCCGAAtctgtctctatatcctcttct 716
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 625 CTCATGAGTCTTCCTCTCCTCAAGGATTCCGATTGCGAATCTGTCTCTATATCCTCTTCT 684
Query 717 cgtatgtctctctcctcttcctcctctGGCCATGACCACGAAGATCTTCCAAGACTCTCT 776
|||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct 685 CGTATGTCTCTCTCCTCTTCCTCCTCCGGCCACGACCACGAAGATATCCCAAGACTCTCT 744
Query 777 CTCGATGCAGAGAGACCTAACCAAAACCACATCATTAACCTCAACCACAATCTCACTGCG 836
||||||||||||||||||||||| ||||| | | | ||||||||||||||||||||||
Sbjct 745 CTCGATGCAGAGAGACCTAACCATAACCA--T-A--A-CCTCAACCACAATCTCACTGCG 798
Query 837 AATCCATTTGCTCCGGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 896
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AATCCATTTGCTCCCGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 858
Query 897 CATTCAACATCAGGAACCGGAGGAGGAAGAGTTGGACGCAGTCCGATGCGACGTTCCGGT 956
|||||| || |||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 859 CATTCATCAGCAGGAACCGGTGGTGGGAGAGTTGGACGAAGCCCGATGCGACGTTCCGGT 918
Query 957 GGAGAAACATC--AGCCAT-A---AT-GA-A-CAGAGGAGTCTCTGTAGACAGTCCAAGA 1007
||||||||||| | | | | || | | ||||||||||||||||||||||||||||
Sbjct 919 GGAGAAACATCTCAAACGTCAGCGATTGCGAGCAGAGGAGTCTCTGTAGACAGTCCAAGA 978
Query 1008 CTAAACTCTTCAGGTAAAATCGTGTTCCAGAATCTAGAACGAAGCTCAAGCAGTCCGAGT 1067
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 979 CTAAACTCTTCAGGTAAAATCGTGTTTCAGAGCCTTGAACGAAGCTCAAGCAGTCCGAGT 1038
Query 1068 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGAGGAATGGAGAGATCGTATAGCTCA 1127
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1039 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGGGGAATGGAGAGATCGTATAGCTCA 1098
Query 1128 AACGTTAGGGTTACTCCAGTTTTGAACGTTCCCGTTTGCTCAATCAGAGGTGGTTCAGTA 1187
||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||
Sbjct 1099 AACGTTAGGGTAACTCCAGTACTAAACGTTCCCGTTTGTTCAATTAGAGGTGGTTCAGTA 1158
Query 1188 GTCTTTGGTCAGTTTTTCTCTTCCTCGTCA 1217
|| ||||| ||||| |||||||||||||||
Sbjct 1159 GTATTTGGCCAGTTCTTCTCTTCCTCGTCA 1188
Score = 433 bits (234), Expect = 3e-120
Identities = 500/614 (81%), Gaps = 76/614 (12%)
Strand=Plus/Plus
Query 1251 AACAACAACAATAATAGAGCGTCGTGTCACATCAGTAGAGGCCGTAACTCCACGGATCGA 1310
||||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1188 AACAACAACAACAACAGATCGTCGTCTCATATCAGTAGAGGCCGTAACTCCACGGATCGA 1247
Query 1311 ATCTAACCCGACTATTATAAATGAAGGAACCATCAATGGTAACAACAACACTGTATTGAT 1370
|||||| || | ||| || | | ||| ||| |||| || | |||||
Sbjct 1248 ATCTAA-CC--C-------AAT---GGTA--A-CAA---CAAC-ACAA-TCT-TGTTGAT 1285
Query 1371 TCAACAGTAGCTAGCTAGTACTCTAGTAGTAATCATTCTGttttttggtttgtttacaac 1430
|||||||||||||||||| ||||| |||||||||||||||||| ||| |||
Sbjct 1286 TCAACAGTAGCTAGCTAG----CTAGTGGTAATCATTCTGTTTTTT--TTTATTT----T 1335
Query 1431 aaatcttatttttaacagagctttttttttATA-AGGTA-TTAG-AATTGTCCTGGGTGT 1487
| || ||| |||| | | || ||| || | | | | |||| |||| |||| || |
Sbjct 1336 TGGT-TTGTTTACAACAAATC-TTATTTGTA-ACA-G-AGTTAGAAATT-TCCTTGGACT 1389
Query 1488 GTAAATAAAGAATCTGCCATTGGTGAAGTGTAATTCTAGGGTTCATTGACATAGATAGAG 1547
||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1390 GTAAATAAAGAATCTGCCA-CGGTGAAGTGTAATTCTAGAGTTCATTGAC----ATAGAG 1444
Query 1548 ACACAAAAT-TGGAAAT-GGAGACTCCTAAATTGTGTGTTTTT-GCTTGTGCTTGGGTTG 1604
|||| |||| ||| ||| ||| |||||| |||||||| ||||| ||||||||||||||||
Sbjct 1445 ACAC-AAATGTGG-AATCGGAAACTCCT-AATTGTGTTTTTTTGGCTTGTGCTTGGGTTG 1501
Query 1605 AGAGAGACACATAGAGAGAGTGAGGTAGACGCGCTAAAGGG-ATGCGCGTGGGTCAGAAC 1663
|||||| || |||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 1502 AGAGAG--AC--AGAGAGAGTGAGGTAGACGCGCTATAGGGAAT-CGCGTGGGTCATAAA 1556
Query 1664 ATAGGAAACAGATTC--TTTTGCTCTCTATCATATGCTCTTCTTC--TGCGTGTATTTGC 1719
||||||||||||||| |||| ||| |||||||||||||||||| || ||||||||||
Sbjct 1557 ATAGGAAACAGATTCTTTTTTTTTCTATATCATATGCTCTTCTTCTGTGTGTGTATTTGC 1616
Query 1720 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGattttatttttaatgt 1779
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |
Sbjct 1617 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGATTTT-TTTT-A-T-T 1672
Query 1780 atctttttattatatagtttattttgtcgttttctgtgtttCGGAAATGATGCAGTCTTC 1839
|| || | | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1673 AT------AT-AG-T--TTTATTTTGTCGTTTTCTGTGTTTCGGAAATGATGCAGTTTTC 1722
Query 1840 AGAGACTTTACCAC 1853
||||||||||||||
Sbjct 1723 AGAGACTTTACCAC 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69590877615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5