BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79060.1 Length=1853 Score E Sequences producing significant alignments: (Bits) Value Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1 1557 0.0 > Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1 Length=1736 Score = 1557 bits (843), Expect = 0.0 Identities = 1066/1170 (91%), Gaps = 30/1170 (3%) Strand=Plus/Plus Query 58 ctctctcGTTTGGATCTGGCCGTTGATTTTCTCCCGACGGCGATAAGTTTGTTGCATGAA 117 ||||||| |||||||||||||||||||||| || ||||||||||||| | ||||||||| Sbjct 39 CTCTCTCTTTTGGATCTGGCCGTTGATTTTTTCGGGACGGCGATAAGTAT-TTGCATGAA 97 Query 118 CGCCGGTGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGATTTTCCTACTT 177 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 98 CGCCGGAGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGAGTTTCCTACTT 157 Query 178 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGACGACGGTGGTCGGAGTTCTGGAT 237 ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct 158 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGAGGATGGTGGTCGGACTTCTGGAT 217 Query 238 CCGTCGCATCGGAGATTCCGAAGGAGGAAACAGCAGTCGGAGCTGGTGATTTCGAGTTTA 297 ||| |||||| ||||||| |||| ||||||| | |||||||||||||||||||||||||| Sbjct 218 CCGCCGCATCAGAGATTCAGAAGAAGGAAACCGTAGTCGGAGCTGGTGATTTCGAGTTTA 277 Query 298 GGTTAGAGGAGGATCCAGTCGGAATGCTCCCAGCCGATGAGCTTTTCTCCGACGGTAAA- 356 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 278 GGTTGGAGGAGGATCCAGTCGGAATGCTCCCAGCCGACGAGCTTTTCTCCGACGG-AAAG 336 Query 357 CTCGTGACGAAGCAGCAACAACAACAGACGACGGAGATCGGCGGGAAATGCAGGAGGATG 416 ||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 337 CTCGTGACGAAGCAG---CAACAACGGACGGTGGAGACCGGCGGGAAATGCAGGAGGATG 393 Query 417 GAAGTCGTGGAGATTGAGATCTCCGGGGGTGGCGATAATTGCTCGTTTTCTCCAAAGGCG 476 ||||| |||||||| |||||| |||| |||||||||| |||||||||||||||||||||| Sbjct 394 GAAGTGGTGGAGATGGAGATCGCCGGTGGTGGCGATATTTGCTCGTTTTCTCCAAAGGCG 453 Query 477 CCACGGTGTTCAAGTAGATGGAGGGACTTGTTAGGACTCAAACGATTCTCTCAGAATAGC 536 || |||||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 454 CCTCGGTGTTCGAGTAGATGGAGGGACTTGTTAGGGCTTAAACGATTCTCTCAGAAT--- 510 Query 537 AGCAAATCCGCGTCGACTGcgacgacgacgacgacgaATCCGAGATCGTCAACTTCGTCG 596 |||||| ||||||||| |||||| | | |||||||||||||||| ||||||||| Sbjct 511 AGCAAAGCCGCGTCGA---CGACGA-TTC--CTTCGAATCCGAGATCGTCTACTTCGTCG 564 Query 597 TTGAAACAGTTCTTGCATCGGAGCTCCAGGTCCTCGTCGTCCTCTTCAGATGCTTCGTTA 656 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 565 TTGAAACAATTCTTGCATCGTAGCTCCAGATCCTCGTCGTCCTCTTCAGATGCTTCGTTG 624 Query 657 CTCATGAGTCTTCCTCTCCTCAAAGATTCCGATTCCGAAtctgtctctatatcctcttct 716 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 625 CTCATGAGTCTTCCTCTCCTCAAGGATTCCGATTGCGAATCTGTCTCTATATCCTCTTCT 684 Query 717 cgtatgtctctctcctcttcctcctctGGCCATGACCACGAAGATCTTCCAAGACTCTCT 776 |||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||| Sbjct 685 CGTATGTCTCTCTCCTCTTCCTCCTCCGGCCACGACCACGAAGATATCCCAAGACTCTCT 744 Query 777 CTCGATGCAGAGAGACCTAACCAAAACCACATCATTAACCTCAACCACAATCTCACTGCG 836 ||||||||||||||||||||||| ||||| | | | |||||||||||||||||||||| Sbjct 745 CTCGATGCAGAGAGACCTAACCATAACCA--T-A--A-CCTCAACCACAATCTCACTGCG 798 Query 837 AATCCATTTGCTCCGGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 896 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 AATCCATTTGCTCCCGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 858 Query 897 CATTCAACATCAGGAACCGGAGGAGGAAGAGTTGGACGCAGTCCGATGCGACGTTCCGGT 956 |||||| || |||||||||| || || ||||||||||| || |||||||||||||||||| Sbjct 859 CATTCATCAGCAGGAACCGGTGGTGGGAGAGTTGGACGAAGCCCGATGCGACGTTCCGGT 918 Query 957 GGAGAAACATC--AGCCAT-A---AT-GA-A-CAGAGGAGTCTCTGTAGACAGTCCAAGA 1007 ||||||||||| | | | | || | | |||||||||||||||||||||||||||| Sbjct 919 GGAGAAACATCTCAAACGTCAGCGATTGCGAGCAGAGGAGTCTCTGTAGACAGTCCAAGA 978 Query 1008 CTAAACTCTTCAGGTAAAATCGTGTTCCAGAATCTAGAACGAAGCTCAAGCAGTCCGAGT 1067 |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct 979 CTAAACTCTTCAGGTAAAATCGTGTTTCAGAGCCTTGAACGAAGCTCAAGCAGTCCGAGT 1038 Query 1068 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGAGGAATGGAGAGATCGTATAGCTCA 1127 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1039 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGGGGAATGGAGAGATCGTATAGCTCA 1098 Query 1128 AACGTTAGGGTTACTCCAGTTTTGAACGTTCCCGTTTGCTCAATCAGAGGTGGTTCAGTA 1187 ||||||||||| |||||||| | |||||||||||||| ||||| ||||||||||||||| Sbjct 1099 AACGTTAGGGTAACTCCAGTACTAAACGTTCCCGTTTGTTCAATTAGAGGTGGTTCAGTA 1158 Query 1188 GTCTTTGGTCAGTTTTTCTCTTCCTCGTCA 1217 || ||||| ||||| ||||||||||||||| Sbjct 1159 GTATTTGGCCAGTTCTTCTCTTCCTCGTCA 1188 Score = 433 bits (234), Expect = 3e-120 Identities = 500/614 (81%), Gaps = 76/614 (12%) Strand=Plus/Plus Query 1251 AACAACAACAATAATAGAGCGTCGTGTCACATCAGTAGAGGCCGTAACTCCACGGATCGA 1310 ||||||||||| || ||| |||||| ||| |||||||||||||||||||||||||||||| Sbjct 1188 AACAACAACAACAACAGATCGTCGTCTCATATCAGTAGAGGCCGTAACTCCACGGATCGA 1247 Query 1311 ATCTAACCCGACTATTATAAATGAAGGAACCATCAATGGTAACAACAACACTGTATTGAT 1370 |||||| || | ||| || | | ||| ||| |||| || | ||||| Sbjct 1248 ATCTAA-CC--C-------AAT---GGTA--A-CAA---CAAC-ACAA-TCT-TGTTGAT 1285 Query 1371 TCAACAGTAGCTAGCTAGTACTCTAGTAGTAATCATTCTGttttttggtttgtttacaac 1430 |||||||||||||||||| ||||| |||||||||||||||||| ||| ||| Sbjct 1286 TCAACAGTAGCTAGCTAG----CTAGTGGTAATCATTCTGTTTTTT--TTTATTT----T 1335 Query 1431 aaatcttatttttaacagagctttttttttATA-AGGTA-TTAG-AATTGTCCTGGGTGT 1487 | || ||| |||| | | || ||| || | | | | |||| |||| |||| || | Sbjct 1336 TGGT-TTGTTTACAACAAATC-TTATTTGTA-ACA-G-AGTTAGAAATT-TCCTTGGACT 1389 Query 1488 GTAAATAAAGAATCTGCCATTGGTGAAGTGTAATTCTAGGGTTCATTGACATAGATAGAG 1547 ||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| Sbjct 1390 GTAAATAAAGAATCTGCCA-CGGTGAAGTGTAATTCTAGAGTTCATTGAC----ATAGAG 1444 Query 1548 ACACAAAAT-TGGAAAT-GGAGACTCCTAAATTGTGTGTTTTT-GCTTGTGCTTGGGTTG 1604 |||| |||| ||| ||| ||| |||||| |||||||| ||||| |||||||||||||||| Sbjct 1445 ACAC-AAATGTGG-AATCGGAAACTCCT-AATTGTGTTTTTTTGGCTTGTGCTTGGGTTG 1501 Query 1605 AGAGAGACACATAGAGAGAGTGAGGTAGACGCGCTAAAGGG-ATGCGCGTGGGTCAGAAC 1663 |||||| || |||||||||||||||||||||||| |||| || ||||||||||| || Sbjct 1502 AGAGAG--AC--AGAGAGAGTGAGGTAGACGCGCTATAGGGAAT-CGCGTGGGTCATAAA 1556 Query 1664 ATAGGAAACAGATTC--TTTTGCTCTCTATCATATGCTCTTCTTC--TGCGTGTATTTGC 1719 ||||||||||||||| |||| ||| |||||||||||||||||| || |||||||||| Sbjct 1557 ATAGGAAACAGATTCTTTTTTTTTCTATATCATATGCTCTTCTTCTGTGTGTGTATTTGC 1616 Query 1720 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGattttatttttaatgt 1779 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | Sbjct 1617 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGATTTT-TTTT-A-T-T 1672 Query 1780 atctttttattatatagtttattttgtcgttttctgtgtttCGGAAATGATGCAGTCTTC 1839 || || | | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1673 AT------AT-AG-T--TTTATTTTGTCGTTTTCTGTGTTTCGGAAATGATGCAGTTTTC 1722 Query 1840 AGAGACTTTACCAC 1853 |||||||||||||| Sbjct 1723 AGAGACTTTACCAC 1736 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69590877615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5