BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79070.1

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316805 jgi|Araly1|316805|fgenesh1_pm.C_scaffold_2001838           616    1e-175


> Ahg316805 jgi|Araly1|316805|fgenesh1_pm.C_scaffold_2001838
Length=417

 Score =  616 bits (333),  Expect = 1e-175
 Identities = 390/418 (93%), Gaps = 2/418 (0%)
 Strand=Plus/Plus

Query  9    ATGGAGCAGCTATCAGACTCGGACCACCGCGATTCTGCTGATGCAACTACTAGCTCATGT  68
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct  1    ATGGAGCAGCTATCAGAATCCGACCACCGCGATTCAGCTGATGCGACTACTAGCTCGTGT  60

Query  69   CAATCCACCACCGCAGAAGATGGTCAATG-CGGCGGCGGCGGAGAAGCAATGGCTCGAGG  127
            ||||||||| |||||||||||||| || | ||| ||||| |||||||| |||||||||||
Sbjct  61   CAATCCACCGCCGCAGAAGATGGTGAA-GTCGGTGGCGGTGGAGAAGCTATGGCTCGAGG  119

Query  128  CTTATCAGCGATGCTCGAGTCCGTCATTAAAGACTTTGACTCTAAAGCTCTTGACACGCT  187
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CTTATCAGCGATGCTGGAGTCCGTCATTAAAGACTTTGACTCTAAAGCTCTTGACACGCT  179

Query  188  CAATAGCCAAGATGAACTCTCCGGTTCTCTCGATCGCCTTGTCCAAGAGCTAGATCAATT  247
            ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  180  CAATAGCCAAGATCAACTCTCCGGTTCGCTCGATCGCCTTGTCCAAGAGCTTGATCAATT  239

Query  248  ACTGGAAAACGCTCCATTGCCATTCATTGTACAACACGCATCGAGAATTTCCAGCGTCAA  307
             |||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct  240  GCTGGAAAACGCTCCATTGCCGTTCATAGTACAACACGCATCAAGAATCTCCAGTGTCAA  299

Query  308  ACAAAGAGTTTCATCTCTGAATCTTGTTCTTAAATCTGTCCAACGACGTATCGATAACAT  367
            |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct  300  ACAAAGAGTTTCATCTCTCAATCTTGTGCTTAAATCTGTCCAACGACGTATTGATAACAT  359

Query  368  CGATCACATGCTCTCTGCCAACACCACGCAAGAGAAAGCATCCTCGGAAACTACATGA  425
             |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  360  TGATCACATGCTCTCTGCCAACACCACGCTAGAGAAAACATCCTCGGAAACTACATGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28515941916


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5