BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79080.1
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927326 jgi|Araly1|927326|scaffold_202887.1 2662 0.0
> Ahg927326 jgi|Araly1|927326|scaffold_202887.1
Length=1783
Score = 2662 bits (1441), Expect = 0.0
Identities = 1670/1781 (94%), Gaps = 14/1781 (1%)
Strand=Plus/Plus
Query 93 TTGCTGTCCGATTTTAAGCCATGTCGACTCTACTGAACTCAGTCTTATCCAT---GGCG- 148
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 TTGCTGTTCGATTTTAAGCCATGTCGACTCTGTTGAACTCAGTCTTATCCATGGCGGCGA 60
Query 149 -T-CA---CCGGAATCATCGCCGAGAAAAGCCGTAGGTTTTGTTTCCCACATCCCTTCTG 203
| || ||||||||||||||||||||| || |||| |||||||| |||||||| | |
Sbjct 61 ATCCATCGCCGGAATCATCGCCGAGAAAATCCCTAGGCTTTGTTTCTCACATCCCCACCG 120
Query 204 GTTTCCTTCATTTCTCCTCCGTCAGTAAAGGTGTTGCTAGGGTTTTAGCTTCGACCCAGA 263
|||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 121 GTTTCCTTCACTTCTCCTCCGTGAATAAAGGTGTCGCTAGGGTTTTAGCTTCGACCCAGA 180
Query 264 TAACATTATCCCCTAAAGACTCCGCCTTTACCATTACTGGATCCAGTTGGAAACCCGATT 323
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TAACGTTATCCCCTAAAGACTCCGCCTTTACCATTACCGGATCCAGTTGGAAACCCGATT 240
Query 324 TGGATTCCGGGTCGTTTTCTGATGACCCGAGAAGCGACGAGCCGAATTTGAGCGATAGTT 383
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 241 TGGGTTCCGGGTCGTTTTCTGATGACCCGAGAAGCGACGAGCCGAGCTTGAGCGATACTT 300
Query 384 TCTCTCATCTAGAAAGTTTAGTCACGGGA-GGGCATAAACCCAATGTAGCTCATTCTACT 442
|||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 301 TCTCTCATCTCGAATGTTTAGTCAC-GGATGGGCATAAACCCAATGTAGCTCATTCTACT 359
Query 443 CAGCTCTTGTACGATCTCTGCAAAGCCAATAGATTGAAGAAAGCCATTCGTGTGATTGAG 502
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CAGCTCTTGTACGATCTCTGCAAAGCCAATAGATTGAAGAAAGCTATTCGTGTGATTGAG 419
Query 503 CTTATGGTTAGCTCCGGGATTATACCCGATGCATCTGCTTACACGTATTTGGTTAATCAG 562
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 420 CTTATGGTTAGCTCCGGGATTATACCCGATGCATCTGCTTACACTTATCTGGTTAATCAG 479
Query 563 CTTTGTAAAAGAGGTAACGTTGGTTATGCGATGCAGCTTGTTGAGAAAATGGAAGATCAT 622
||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 480 CTTTGCAAGAGAGGTAACGTTGGTTACGCTATGCAGCTTGTTGAGAAAATGGAAGATCAT 539
Query 623 GGTTATCCTTCTAATACCGTTACTTACAATGCCTTGGTTCGAGGTCTTTGTATGCTTGGT 682
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGTTTTCCTTCTAATACCGTTACTTACAATGCCTTGGTTCGAGGTCTTTGTATGCTTGGA 599
Query 683 AGCTTAAATCAAAGCTTACAGTTTGTTGAGAGGTTGATGCAGAAAGGCTTAGCTCCAAAT 742
|||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 600 AGCTTAAACCAGAGCTTGCAGTTTGTTGAGAGGTTGATGCAGAAAGGTTTAGCTCCTAAT 659
Query 743 GCTTTCACTTATTCTTTCTTGCTTGAAGCAGCTTATAAAGAACGAGGAACCGACGAAGCT 802
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 660 GCTTTCACTTATTCTTTCTTGCTTGAGGCTGCTTATAAAGAACGAGGAACCGACCAAGCT 719
Query 803 GTGAAGCTCTTAGATGAGATCATTGTGAAAGGCGGTGAACCCAATTTGGTTAGCTATAAT 862
||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 720 GTGAAGCTCTTAGATCAGATCATTGCCAAAGGCGGTCAACCCAATTTGGTTAGCTATAAT 779
Query 863 GTGCTGTTGACTGGTTTCTGTAAAGAAGGGAGAACAGACGATGCCATGGCGCTGTTTAGG 922
||||| |||||||||||||||||| |||||||||| || ||||||||| ||||||||||
Sbjct 780 GTGCTCTTGACTGGTTTCTGTAAACAAGGGAGAACGGATGATGCCATGAAGCTGTTTAGG 839
Query 923 GAATTACCTGCAAAAGGGTTTAAGGCAAATGTTGTGAGCTATAACATTTTGTTGAGGTGT 982
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 840 GAGTTACCTGCAAAAGGGTTTAAGGCTAATGTGGTGAGCTATAACATTTTGTTGAGGTGT 899
Query 983 TTGTGCTGTGATGGGAGGTGGGAGGAAGCGAATTCGCTCTTGGCTGAGATGGACGGTGGA 1042
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 900 TTGTGCTGTGATGGGAGGTGGGACGAAGCGAATTCCCTCTTGGCTGAGATGGACGGTGGA 959
Query 1043 GATCGAGCTCCTTCAGTTGTTACCTATAACATATTGATCAATTCGTTAGCTTTTCATGGA 1102
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATCGAGCTCCTTCAGTGGTTACCTATAACATATTGATCAATTCGTTAGCTTTTCATGGA 1019
Query 1103 AGAACAGAGCAGGCACTGCAGGTTTTAAAGGAGATGAGCAAAGGA-A--ATCATCAGTTT 1159
||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1020 AGAACAGAGCAGGCAATGCAGGTTTTAAAGGAGATGAGTAAAGGACATCATCATCAGTTT 1079
Query 1160 AGAGTCACTGCCACGAGCTATAATCCGGTGATCGCCCGTCTGTGCAAGGAAGGAAAAGTT 1219
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 AGAGTCACTGCCACGAGCTATAATCCGGTAATCGCCCGTCTGTGCAAGGAAGGAAAAGTT 1139
Query 1220 GATCTTGTTGTGAAATGTCTAGACGAGATGATATACCGGCGTTGTAAACCAAACGAAGGA 1279
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1140 GATCTTGTGGTGAAATGTCTAGACGAGATGATATACCGGCGTTGTAAACCCAACGAAGGA 1199
Query 1280 ACGTACAATGCAATAGGTTCGTTATGCGAGCATAACAGCAAGGTGCAGGAAGCGTTTTAC 1339
||||||| || |||||| | ||||||||||||||| |||||||||||||||| || |||
Sbjct 1200 ACGTACAGCGCCATAGGTGCATTATGCGAGCATAACGGCAAGGTGCAGGAAGCCTTCTAC 1259
Query 1340 ATAATACAGAGCTTAAGCAACAAGCAGAAATGCTGCACGCATGATTTCTACAAAAGCGTA 1399
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1260 ATAATACAGAGCTTAAGTAACAAGCAGAAATGCTGTACGCATGACTTCTACAAAAGCGTA 1319
Query 1400 ATCACGAGTCTCTGCAGGAAAGGTAACACCTTTGCAGCGTTCCAGCTCTTGTACGAGATG 1459
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1320 ATCACGAGTATGTGCAGGAAAGGTAACACCTTTGCAGCGTTTCAGCTCTTGTACGAGATG 1379
Query 1460 ACTAGGTGCGGGTTTGATCCCGATGCGCACACCTACTCGGCTTTGATCAGAGGGCTGTGT 1519
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 ACTAGGTGCGGGTTTGATCCTGATGCGCACACCTACTCGGCTTTGATCAGAGGTCTGTGT 1439
Query 1520 CTGGAAGGGATGTTTACAGGAGCCATGGAGGTTTTGTCGATAATGGAAGAGAGTGAGAAT 1579
|||||||||||||||| ||| || ||||||||||||||||||||||| ||||| ||| ||
Sbjct 1440 CTGGAAGGGATGTTTATAGGGGCTATGGAGGTTTTGTCGATAATGGAGGAGAGCGAGTAT 1499
Query 1580 TGTAAACCTACAGTGGATAACTTTAACGCCATGATCCTAGGGTTGTGCAAGATAAGGAGG 1639
| |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1500 TATAAACCTACAGTAGATAACTTTAATGCAATGATTCTAGGGTTGTGCAAGATAAGGAGG 1559
Query 1640 ACAGATTTGGCAATGGAGGTGTTTGAGATGATGGTTGAGAAGAAGAGAATGCCGAATGAG 1699
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1560 ACAGATTTGGCATTGGAGGTGTTTGAGATGATGGTTGGGAAGAAGAGAATGCCGAATGAG 1619
Query 1700 ACAACATATGCGATACTCGTTGAAGGGATAGCTCATGAGGATGAATTGGAGCTGGCTAAA 1759
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1620 ACAACATATGCGATAATCGTTGAAGGTATAGCACATGAGGATGAATTGGAGCTGGCTAAA 1679
Query 1760 GAAGTTCTTGATGAGCTACGATTGCGTAAGGTTATAGGACAGAACGCAGTAGATAGGATT 1819
|||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1680 GAAGTTCTGGAGGAGCTACGATCGCGCAAGGTTATAGGACAGAACGCAGTAGATAGGATT 1739
Query 1820 GTAATGCAGTTCAATTTAGATTGATGGGTAGGAGGCGAAGA 1860
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GTGATGCAGTTCAATTTAGATTGATGGGTAGGAGGCGAAGA 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74161707015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5