BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79090.1
Length=3000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620 3764 0.0
Ahg920567 jgi|Araly1|920567|scaffold_101848.1 1242 0.0
> Ahg909539 jgi|Araly1|909539|Al_scaffold_0002_2620
Length=2367
Score = 3764 bits (2038), Expect = 0.0
Identities = 2251/2353 (96%), Gaps = 18/2353 (1%)
Strand=Plus/Plus
Query 323 TCCCGTAACTCAGGATCTTAAGAAATTTGGAGATAATTCTACAGGTAACACAATGTTTGA 382
|||||| ||| ||||||||||||| |||||||||||| || ||||| | |||||||||||
Sbjct 24 TCCCGTGACTGAGGATCTTAAGAATTTTGGAGATAATCCTTCAGGTGATACAATGTTTGA 83
Query 383 TGCATCTCAATATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTGGGTGGATT 442
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 84 TGCATCTCAGTATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTTGGTGGATT 143
Query 443 GGAAGAAGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 502
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGATGAGGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 203
Query 503 GGAAGAGGTTGGAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 562
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GGAAGAGGTTGAAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 263
Query 563 AAAGTTGAATAGGGAACCTGATGTGTATAGTAA-TACGGGGCCAATCACTGATAGGCGAT 621
|||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 264 AAAGTTGAATAGGGAACCTGATGTATATAG-AAGTACAGGGCCAATCACTGATAGGCGAT 322
Query 622 CAAGT-CAGAATTCTTTAGCTGCTGAGTGGACCCATGGGGAAGAGTTACCAAATTGGTAC 680
||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 323 CAA-TACAGAATTCTCTAGCTGCTGAGTGGACCCATGGGGAGGAGTTGCCAAATTGGTAC 381
Query 681 GGCCGGCAAATACTGGACTCTGATGCCATTAAAGATGACAAGGTGTGGTCAGCACAGCCA 740
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 382 GGCCGGCCAATACTGGACTCTGATGCCATTAAAGATGACAAGGCGTGGTCAGCACAGCCT 441
Query 741 TTTTCATCTCTGGACCGTGTTGAGCAGAGAATCCCTGACAGAACAAAATTGTATCCAGAA 800
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 442 TTTTCATCTCTGGACCTTGTTCAGCAGAGAAACCCTGACAGAACAAAATTGTATCCAGAA 501
Query 801 CCACAACGTCAACTGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 860
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CCACAGGGTCAACCGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 561
Query 861 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 621
Query 921 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTT 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTC 681
Query 981 TCTCCTTTTCCAAATTTGCAGCCTCAGTTGCCTAGCATGCATCATGGATCACCGCAGCAT 1040
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 682 TCTCCTTTTCCAACTTTGCAGCCTCAGTTGCCTACCATGCATCATGGATCACCGCAGCAT 741
Query 1041 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCTCCCTCCAGCTCAA 1100
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 742 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCGCCCTCCAGCTCAA 801
Query 1101 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGATCATGAATAATGCGATG 1160
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 802 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCTGGGATCATGAATAATGCGATG 861
Query 1161 CTACAACAGCCTCCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 1220
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CTACAACAGCCACCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 921
Query 1221 AGGTTACCACATCCGATGCAGCCTCCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 1280
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 922 AGGTTACCACATCCGATGCAGCCTTCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 981
Query 1281 TTTAATTCCCATCTTTCTCGATCATCATCCTCTGGAAATTATGATGGAATGCTTGGGTTT 1340
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 982 TTTAATTCCCATCTTTCTCGATCATCTTCATCTGGAAATTATGATGGAATGCTTGGGTTT 1041
Query 1341 GGTGATCTGAGGGAAGTAAGACCAGGATCAGGTCATGGGAACAGACAGAATGTGCGTTTT 1400
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1042 GGTGATCTGAGGGAAGCAAGACCAGGATCAGGTCATGGGAACAGACAGAACATGCGTTTT 1101
Query 1401 CCCCAACAAGGCTTTGATGCTGGCGTTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1460
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1102 CATCAACAAGGCTTTGATACTGGCATTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1161
Query 1461 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1221
Query 1521 CCTTATGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1580
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 CCTTACGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1281
Query 1581 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTTCAACAGCGTGCACGGTCGAAC 1640
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1282 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTCCAACAGCGTGCACGGACAAAC 1341
Query 1641 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATC 1700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATT 1401
Query 1701 CGCAGGCCTCGTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGCA 1760
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1402 CGCAGGCCTCGTCCTCTTCTTGAAGTGGACCCTCCAAATTCAGCTAAATCTGGTAATGCA 1461
Query 1761 GAGCATAAACCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTGTAC 1820
||||||| || | ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1462 GAGCATA--CC---G-ATAAGCCCCTTGATCAAGAACCGATGCTTGCAGCTAGAGTATAC 1515
Query 1821 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTT 1880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTC 1575
Query 1881 AACCAACTCCAGGACGGAGGACACCAGTTGAAACAAAGACGACAAG-CATTGTTGCAGAG 1939
||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||
Sbjct 1576 AACCAACTCCAGGACGGAGGAAACCAGTTGAAAAAAAGACGACA-GTCATTGTTGCAGAA 1634
Query 1940 CCTTGCGGTTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCAGTCTCT 1999
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1635 CCTTGCGGCTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCGGTCTCA 1694
Query 2000 TGATGATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATAAG 2059
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1695 TGATGATTTTCTCTTTCTAAGGATAATCTCTCTTCCAAAGGGTCGGAAGCTACTTATAAG 1754
Query 2060 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGCATGGCCATTTT 2119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1755 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGTATGGCCATTTT 1814
Query 2120 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 1874
Query 2180 AAATAAGCTTGCAACAGTTATCAACTTGTGCATTCAAAACATGGAGTTAGGACCGGTAAG 2239
| |||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1875 ATATAAACTTGCAAAAGTTATCAACGTGTGCATTCAAAACATGGAGTTGGGACCGGTAAG 1934
Query 2240 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTAGGCAG 2299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1935 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTGGGCAG 1994
Query 2300 TCCTGTTGGAGACGGAGCTTCCACAGTATTGAAATCAATACTCGACAGAGCTTCCGAGCT 2359
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||
Sbjct 1995 TCCTGTTGGAGACGGAGCTTCCACGGTACTGAAATCAACACTCGACAGAGCTTCGGAGCT 2054
Query 2360 TATCCGGGCTAATAATTTCAACAACGCAGGGATAGCTCTATGGCGCGCTTCCTTTAATGA 2419
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 2055 TATTCGGGCTAATAATTTCAACAACGCAGGCATGGCTCTATGGCGCGCTTCCTTTAACGA 2114
Query 2420 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2174
Query 2480 G----CA-A-TTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCTGCAAAAGCCAT 2533
| || | ||||||||||| ||||| |||||||||||||| | |||||||||||||||
Sbjct 2175 GAATTCACAATTGCCACCGCAGTTTGCTACTGAGATATCTGATGCAGCTGCAAAAGCCAT 2234
Query 2534 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2294
Query 2594 AAAGAGGATACTGATGGAGTTTTTGAAACGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2653
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2295 AAAGAGAATACTAATGGAGTTTTTGAAAAGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2354
Query 2654 AGTATTAAGTTGA 2666
||| |||||||||
Sbjct 2355 AGTCTTAAGTTGA 2367
> Ahg920567 jgi|Araly1|920567|scaffold_101848.1
Length=2353
Score = 1242 bits (672), Expect = 0.0
Identities = 1428/1781 (80%), Gaps = 100/1781 (6%)
Strand=Plus/Plus
Query 908 ACCAGATCAGCGTTTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGG 967
||||||||||| ||| ||||| || |||| || || ||| |||| |||| |||| || ||
Sbjct 548 ACCAGATCAGCATTTTGGACAACCAAATACACAATTTCATTCTGATGGGTCTCATATCGG 607
Query 968 ATCGCCAAACT-TTTCTCCTTTTCCAAATT-TGCAGCCTCAGTTGCCTAGCATGCATCAT 1025
||||||||| | | ||||| ||||||| || | || ||||||||| | ||| | |||
Sbjct 608 ATCGCCAAA-TCTCTCTCCATTTCCAAGTTCT-CATCCTCAGTTGGTTGGCA--C-GCAT 662
Query 1026 GGATCACCGCAGCAT-ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAA 1084
|| |||||||| || |||||||||| ||| |||||||| ||| |||||||| ||| ||
Sbjct 663 GGGTCACCGCA-AATCACTGGAAACATGCCACAGTTTCGACCTTCTCTTCCTGGGAACAA 721
Query 1085 TCTCCCTCCAGCTCAATGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGAT 1144
|| ||| |||||||||||||||||| | ||||||||| |||||| |||||||| |||||
Sbjct 722 TCGCCCCCCAGCTCAATGGATGAATGGCCAAAATATGTTTCCTGGAGATAGTTCTGGGAT 781
Query 1145 CATGAATAATGCGATGCTACAACAGC--CT-CCTCATCAAAACGGTTTGATGCCTC--CA 1199
|||||| || | | | |||||||| | ||||||||||||||| | ||||||| ||
Sbjct 782 CATGAACAACATGTTACCACAACAGCAGTTACCTCATCAAAACGGTCTAATGCCTCAACA 841
Query 1200 -CA---GATG---C--A-G--GGCT-CTCAGAATAGGTTACCACATCCGATGCAGCCTCC 1246
|| |||| | | | || | |||||||||||||| ||||||||||||| | ||
Sbjct 842 GCAGCGGATGCCTCAGATGCAGGTTCCTCAGAATAGGTTAGTACATCCGATGCAG-C-CC 899
Query 1247 TCTCGGGCATATGCCAGGAATGCAGCCTCAGTTATTTAATTCCCATCTTTCTCGATCATC 1306
| ||||||| || |||||||||||||||| ||||||||||| | |||||||| ||| |
Sbjct 900 -CACGGGCATTTGTCAGGAATGCAGCCTCAACTATTTAATTCCAACCTTTCTCGGTCAGC 958
Query 1307 ATCCTCTGGAAATTATGATGGAATGCTTGGGTTTGGTGATCTGAGGGAAGTAAGACCAGG 1366
|||||| || | |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 959 ATCCTCGGGCAGTTATGATGCAATGCTTGGGTTTGGTGATCTGAGGGAAGCAAGACCAGG 1018
Query 1367 ATCAG-GTCATGGGAACAGACAGAATGTGCGTTTTCCCCAACAAGGCTTTGATGCTGG-C 1424
||| | |||||||||||||||| || |||| |||| ||||| || ||||||| ||| |
Sbjct 1019 ATC-GAGTCATGGGAACAGACAAAACATGCGCTTTCTTCAACAGGGTTTTGATGGTGGAC 1077
Query 1425 GTTC--A-GAG----AA-G-AT---ATCCATTCCGGTCTAAATATATGTCAGCTGGTGAG 1472
||| | ||| || | || ||| |||||||| ||||||||| |||||| |||
Sbjct 1078 -TTCAGAGGAGAAATAATGCATGGCCTCCTTTCCGGTCGAAATATATGACAGCTGTTGAA 1136
Query 1473 ATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGATCCTTATGTTGAT 1532
|||||||| || || |||||||| ||||| ||||| || ||||||||||||||||| |||
Sbjct 1137 ATAGAGAACATCCTAAGAATGCAACTTGTGGCTACCCATAGCAATGATCCTTATGTAGAT 1196
Query 1533 GATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAACTGAAGCATCAT 1592
||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1197 GATTATTACCACCAGGCATGTCTTGCTAAGAAATCTGCTGGTGCAAAACTGAAGCATCAT 1256
Query 1593 TTCTGTCCAAATCATTTGAGGGACCTTCAA-CAGCGTGCACGGTCG-AACAACGAGCCCC 1650
|||||||||||||||||||| ||||||| | | ||||| || || ||||| |||||||
Sbjct 1257 TTCTGTCCAAATCATTTGAGAGACCTTCCATCT-CGTGCCCG-TCCTAACAATGAGCCCC 1314
Query 1651 ATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATCCGCAGGCCTC 1710
| || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1315 ACGCATTTCTTCAGGTTGATGCTCTTGGTAGAGTTCCTTTCTCTTCGATCCGCAGGCCTC 1374
Query 1711 GTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGC-AGAGCATAAA 1769
| |||||||||||| |||| |||||||||||| | |||| ||||||| | |||||| |||
Sbjct 1375 GGCCTCTGCTTGAAATGGATCCTCCAAATTCAACAAAATCTGGTAAT-CTAGAGCAGAAA 1433
Query 1770 CCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTG-TACATTGAGGA 1828
||| || ||||||||||| |||||||| |||||||||||||| ||| | ||||||||
Sbjct 1434 GATACAGACAAGCCCCTTGAACAAGAGCCAATGCTTGCAGCTAGGGTGATT-ATTGAGGA 1492
Query 1829 TGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTTAACCAACT 1888
||||| | ||| ||||||| || |||||||| || || ||||| ||||| || ||||
Sbjct 1493 AGGTCTATACCTCTTCCTTGAGGTAGATGATATTGACCGGTTCTTAGAGTTCAATAAACT 1552
Query 1889 CCAGGACGGAGGACACCAGTTGAAACAAA-GACGACAAGCAT-TGTTGCA-GAGCCTTGC 1945
||| || || ||| ||||||||| |||| | || ||||| | ||||| | | || ||||
Sbjct 1553 CCAAGATGGTGGAAACCAGTTGAGGCAAAAG-CGGCAAGC-TCTGTTGGATGGGC-TTGC 1609
Query 1946 GGTTTCACTTCAGCTCGGTGATCCC-CTCGCCAAGAATGGGCAAAGCCAGTCT-CTTG-A 2002
|| ||||| ||||| | ||| ||| || | ||||| ||||||| | ||| |||| |
Sbjct 1610 AGTGTCACTGCAGCTTGTTGA-CCCACTTGGTAAGAACGGGCAAAAC-AGTGGGCTTGCA 1667
Query 2003 T----G-ATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATA 2057
| | || || |||||||||| ||| ||| |||| |||||| || |||||||||| |
Sbjct 1668 TTTCAGGATCTTGTCTTTCTAAGAATTACCTCCCTTCGAAAGGGCCGGAAGCTACTTACA 1727
Query 2058 AGGTATCTTCAGCTAATTTTCCCTGGCAGCGA-CCTAATGCGGATAGTTTGCATGGCCAT 2116
||||| || ||||| |||||||||||||||| || |||||| || ||||||||||| ||
Sbjct 1728 AGGTACCTCCAGCTTCTTTTCCCTGGCAGCGATCC-AATGCGAATTGTTTGCATGGCTAT 1786
Query 2117 TTTCCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAA- 2175
||| | || |||||||| ||||| ||||| | ||||| || | || | || |||||
Sbjct 1787 TTTTAGACACTTAAGGTCTTTGTTTGGAGTGCGATCATCAGATACTGAAACCA-CAAAAA 1845
Query 2176 CCACAAAT-AAGCTTGCAACAGTTATCAACTTG-TGCATTCAAAACATGGAG-TTAGGAC 2232
|||||| | || ||||||| |||| || ||| |||||||| | |||||| || ||||
Sbjct 1846 CCACAA-TCAAACTTGCAAAAGTTGTCG-CTTTATGCATTCAGACCATGGATCTT-GGAC 1902
Query 2233 CGGTAAGCAC-GTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCC 2291
| |||||| | |||||||||||| || |||||||||||||||||| ||||||| || ||
Sbjct 1903 CCGTAAGC-CTGTGTCTAGCAGCAGTTTCTTGTTCTTCTGAGCAGCCACCGCTTCGTCCT 1961
Query 2292 TTAGGCAGTCCTGTTGGAGACGGAGCTTCCAC-AGTATTGAAATCAATACTCGACAGAGC 2350
|| || |||||||| ||||||| |||| ||| | || | ||||| |||||| |||||
Sbjct 1962 TTGGGTAGTCCTGTCGGAGACGAAGCTACCATTA-TACTCAAATCTGCACTCGATAGAGC 2020
Query 2351 TTCCGAGCTTATCCGGGCTAATAATTTCAACAACGCAGGGAT-AGCTCTATGGCGCGCTT 2409
| |||||||| |||| |||||||||| ||||||| |||| || | ||| ||||| ||||
Sbjct 2021 TACCGAGCTTCTCCGTGCTAATAATTACAACAACTCAGGCATGAA-TCTGTGGCGTGCTT 2079
Query 2410 CCTTTAATGAGTTCTTTAA-TATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATC 2468
||||| |||||||||| || | | |||||| ||||||| ||||| ||||| || ||
Sbjct 2080 CCTTTGATGAGTTCTTCAACT-TACTGATGAAACACTGCATAAGCAAGTACGACAGTATA 2138
Query 2469 ATGCAGAG--T---TT-GCAATTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCT 2522
||||||| | || |||||||||||| || |||||||| ||||||||||||| |||
Sbjct 2139 ATGCAGAACCTGAATTCGCAATTGCCACCACACTTTGCCACAGAGATATCTGAAGCTGCT 2198
Query 2523 GCAAAAGCCATTGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATT 2582
||| ||||||||||| | |||||||| || ||||||||||| | |||||||| |||||
Sbjct 2199 GCACAAGCCATTGTCAGGGAAATGCCTATCGAGCTTCTACGAGCGAGTTTCCCGCACATA 2258
Query 2583 -GATGA-GCAGCAAAAGAGGATACT-GATGGAGTTTTTGAA 2620
| || | |||||||||| ||||| | |||| || |||||
Sbjct 2259 AGC-GATG-AGCAAAAGAGAATACTTG-TGGAATTCTTGAA 2296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113280388630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5