BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79100.1

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927328 jgi|Araly1|927328|scaffold_202889.1                       86.1    9e-17


> Ahg927328 jgi|Araly1|927328|scaffold_202889.1
Length=343

 Score = 86.1 bits (46),  Expect = 9e-17
 Identities = 64/72 (89%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  83   CAAGAGGAGATGCATATGTTGAATTCAAGGCAAAAATAGCTGATGCTGAGAAACCACAGC  142
            ||| ||||||||| || ||||||||||||||   || ||| |||||||||||||||||||
Sbjct  172  CAATAGGAGATGCGTACGTTGAATTCAAGGC---AAGAGCGGATGCTGAGAAACCACAGC  228

Query  143  TGTACATGGATG  154
            ||||||||||||
Sbjct  229  TGTACATGGATG  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7255769590


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5