BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79110.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477082 jgi|Araly1|477082|fgenesh2_kg.2__2212__AT1G79110.1 1419 0.0
> Ahg477082 jgi|Araly1|477082|fgenesh2_kg.2__2212__AT1G79110.1
Length=1193
Score = 1419 bits (768), Expect = 0.0
Identities = 1096/1240 (88%), Gaps = 79/1240 (6%)
Strand=Plus/Plus
Query 62 CTTCACGCACATCAAAGCACCAAAAACAAAAACCGAAACGCATGcatttctaattttcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCACGCACATCAAAGCACCAAAAACAAAAACCGAAACGCATGCATTTCTAATTTTCTA 60
Query 122 tcttctttttaacttcc-tcttctcccacca----ttt--tcatcat---cttcttctct 171
||||||||||||||||| |||||| |||||| ||| ||||||| ||||||||||
Sbjct 61 TCTTCTTTTTAACTTCCTTCTTCT-CCACCATTTTTTTCATCATCATCAACTTCTTCTCT 119
Query 172 ------ctA-A--AC-CTCTCCTTCAATGGCCGTCGATGCTCACCATCTCTTTCTTTCTC 221
||| | | |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 120 AGAAGACTAGACCTCTCTCTCCTTCAATGGCCGTCGATGCTCACCATCTCCTTCTCTCTC 179
Query 222 CTCCTCAACTCTTCTCCAACAGAGAATTAACGATGAATAATAAC-ACTATGGAACCAACT 280
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 180 CTCCTCAACTCTTCTCCAACAGAGAATTAACGTTGAATAA-CACAACTATGGAACCAACT 238
Query 281 AGTGGCGGTTTCTGCAATAACAATCAAACCGGTTACGGCGTCGTTTCACCTTTCTCCGTT 340
||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 239 AGTGGCGGTTTCTGCAATAACAATC-AA------AC--CGTCGTTTCACCTTTCTCCGTT 289
Query 341 CCAAACCATACATCAACAACAACAACAGCAACGCCTCCTCTTCTTCATGTGTACGGCGGC 400
|| ||| || | |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 290 CCTAACGAT--A-CAACAACAACAACAACAACGCCTCCTCTTCTTCACATGTACGGCGGC 346
Query 401 TCTGATACTATTCCCACCACCGCCGGTTACTACGCCGATGGTGCTACTAATCTCGACTGT 460
||||||||||| | |||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 347 GCTGATACTATTACGACCACCGCCGATTACTACGCCGATGGTTCTGCTAATCTCGACTGT 406
Query 461 GAATTTTTCCCTTTACCAACGAGAAAACGCTCAAGAGATTCTTC-A--AGATC-AA--A- 513
|| ||||| ||| |||| |||||||||||||| ||||||||||| | ||||| || |
Sbjct 407 GATTTTTTTCCTATACCGACGAGAAAACGCTCCAGAGATTCTTCTAGCAGATCAAACTAT 466
Query 514 T-T-ATCATCATCTTCTTCTTCAGAACCCGAGATCATCATCAT-GTGTTAACGCTGCTAC 570
| | ||||||||||||||||||||| ||| ||||||||||||| | | | | || ||
Sbjct 467 TATCATCATCATCTTCTTCTTCAGAGCCCTAGATCATCATCATCATCATCATG-TGTTA- 524
Query 571 TACAACAACTACAACAACTCTGTTCTCGTTTCTTGGCCAAGACATTGATATCTCCTCTCA 630
|| | |||| || |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 525 -AC-GCTGCTACTACTACTCCGTTCTCGTTTCTTGGTCAAGACATTGATATCTCCTCTCA 582
Query 631 CATGAATCAACAACAACACGAAATAGATCGATTCGTCTCCCTTCACTTATATCAGATGGA 690
||||||||| |||||||||||||| |||||||||||||||||| | || |||||
Sbjct 583 CATGAATCATCAACAACACGAAATCGATCGATTCGTCTCCCTT--C----AT---ATGGA 633
Query 691 GAGAGTGAAATATGAGATAGAAGAGAAGAGGAAAAGACAAGCGAGAACGATAATGGAGGC 750
||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 634 GAGGGTGAAATATGAGATAGAAGAGAAGAGGAAGAGGCAAGCGAGGACGATAATGGAGGC 693
Query 751 GATAGAGCAAGGACTGGTTAAAAGGCTTCGTGTCAAAGAAGAAGAAAGAGAGAGGATCGG 810
|||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 694 TATAGAGCAAGGACTGGCTAAAAGGCTTCGAGTCAAAGAGGAAGAAAGAGAGAGAATCGG 753
Query 811 CAAGGTTAACCACGCGCTTGAGGAGCGAGTGAAGTCACTTTCTATAGAGAACCAAATCTG 870
|||| |||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 754 CAAGATTAACCACGCGCTTGAGGAGCGAGTGAAGTCACTCTCCATGGAGAACCAAATATG 813
Query 871 GAGAGACCTTGCTCAGACGAACGAAGCCACGGCTAACCACCTCCGAACCAACCTCGAGCA 930
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 814 GAGAGACCTTGCTCAGACCAACGAAGCCACCGCTAACCACCTCCGAACCAACCTCGACCA 873
Query 931 TGTTCTGGCGCAGGTTAAGGACGTATCACGCGGCGCAGGATTAGAGAAAAACATGAACGA 990
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 874 GGTTCTGGCGCAGGTTAAGGAC--AT-ACGCGGCGCAGGATTAGAGAATAACATGAACGA 930
Query 991 AGAGGACGATGCGGAGTCGTGCTGCGGAAGCAGCTGTGGTGGTGGTGGTGAAGAAACGGT 1050
|| ||||||||||||||||||||| |||||||| | || ||||| |||| |||||
Sbjct 931 AGCGGACGATGCGGAGTCGTGCTGTGGAAGCAG-T-TG-TGGTG------AAGACACGGT 981
Query 1051 Aaggcgcagggtaggattagaaagggaggcgcaggataaggcggagaggaggaggaggag 1110
||||||| ||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 982 TAGGCGCACCGTAGG-T-AC---GG-AGGCGCAGGATAAGGCGGAGAGGAGGAGGAGGA- 1034
Query 1111 gatgtgtagaaactgtggggaggaggaATCGTGTGTGTTGCTGTTACCGTGCAGACACTT 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 --TGTGTAGAAACTGTGGGGAGGAGGAATCGTGTGTGTTGCTGTTACCGTGCAGACACTT 1092
Query 1171 GTGCTTGTGTGGAGTATGCGGGTCCAGTGTGCACACGTGTCCCATCTGTACATCTCCTAA 1230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GTGCTTGTGTGGAGTCTGCGGGTCCAGTGTGCACACGTGTCCCATCTGTACATCTCCTAA 1152
Query 1231 AAACGCTAGCGTTCATGTCAACATGTCATCTTGACCCCGT 1270
||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AAACGCTAGCGTTCATGTCAACATGTCATCTTGACCCCGT 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5