BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79120.1
Length=2199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477083 jgi|Araly1|477083|fgenesh2_kg.2__2213__AT1G79120.1 1882 0.0
> Ahg477083 jgi|Araly1|477083|fgenesh2_kg.2__2213__AT1G79120.1
Length=1449
Score = 1882 bits (1019), Expect = 0.0
Identities = 1103/1145 (96%), Gaps = 0/1145 (0%)
Strand=Plus/Plus
Query 343 AGTAGATTGCAATGGACGTTTGTTCAGGTGAGACACAAGTCTGGTGGAGGAGGATGGAGA 402
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AGTAGATCGCAATGGACGGTTGTTCAGGTGCGACACAAGTCTGGTGGAGGAGGATGGAGA 60
Query 403 CCTAAGCAGAAAGTATATCATAGAGTTCATGACCTTGATAAAGCAATTGACTTGAACAAG 462
|| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 CCCAAGCAGAAAGTATATCACAGAGTTCATGAGCTTGATAAAGCAATAGACTTGAACAAG 120
Query 463 AAACCATCTCTGATACTTCAGTTGAAATCTATTATCCAGGCGCAGAAACATGGAAGCCTT 522
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAACCAGCTCTGATACTTCAGTTGAAATCTATTATTCAGGCGCAGAAACATGGAAGCCTT 180
Query 523 CTTCTTAGAGATCTTGAGAAGCATGTTGGGTTTGTTCACAAGTGGAACTTAATGGCTGCC 582
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCTTAGGGATCTTGAGAAGCATGTTGGGTTTGTTCACAAGTGGAACTTAATGGCTGCC 240
Query 583 ATTGAGAAGTACCCTACGATATTTTATGTTGGAGGTGGACACAAAGAACCTCCTTTCGTT 642
|||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 241 ATTGAGAAATACCCTTCGATATTTTATGTTGGAGGTGGAAACAAGGAACCTCCTTTTGTT 300
Query 643 ATGCTGACTGAGAAAGCTAAAAAGATTGCAGCTGAGGAAAGTGAAGCTACAGAGTCAATG 702
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 301 ATGCTGACTGAGAAAGCTAATAAGATTGCAGCTGAGGAAGGTGAAGCTACAGAGTCAATG 360
Query 703 GAACCTATTCTGGTTAATAATCTTAGGAAGTTATTGATGATGTCTGTTGATTGTCGAGTT 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAACCTATTCTGGTTAATAATCTTAGGAAGTTATTGATGATGTCTGTTGATTGTCGAGTG 420
Query 763 CCTTTGGAGAAGGTTGAGTTTATTCAATCTGCAATGGGTTTGCCTCAAGATTTTAAGAGT 822
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTTGGAGAAGGTTGAGTTCATCCAATCTGCAATGGGTTTGCCTCAAGATTTTAAGAGT 480
Query 823 ACATTGATCCCTAAGTACACTGAATTTTTCTCTTTGAAGGTTATCAATGGAAAAGTTAAT 882
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 ACATTGATCCCTAAGTACCCTGAATTTTTCTCTTTAAAGGTTATCAATGGAAAAGTTAAT 540
Query 883 CTTGTTTTAGAGAATTGGGATTCTTCACTGGCAATCACTGCACGAGAGGATAGGTTATCC 942
||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 541 CTTGTCTTAGAGAATTGGGATTCTTCTCTGGCAACCACGGCACGAGAGGATAGGTTATCC 600
Query 943 CGTGAAGGATTCTCCGAGTCAGTTGGGGACAGAAAGAGGGTCAGGATCACAAAGGATGGC 1002
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 CGTGAAGGAGTCCCCGAGTCAGTTGGGGACAGAAAGAGGGTCAGGATAACAAAGGATGGC 660
Query 1003 AATTTCTTGGGACGAAATGCGTTTAAGATTTCTTTTCCTCCTGGTTTTAGGCCTAACGCT 1062
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 AATTTCTTGGGACGAAATGCGTTTAAGGTTTCTTTTCCTCCTGGTTTTAGGCCTAACGCA 720
Query 1063 AGTTATTTAGAGGAATTTGAGAAGTGGCAGAAAATGGAATTCCCATCTCCTTATCTTAAT 1122
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 AGTTATTTAGAGGAATTTGAGAAGTGGCAGAAAATGGAATTTCCATCTCCTTATCTTAAT 780
Query 1123 GCGAGAAGATTTGATGCTGCAGATCCTAAAGCTAGGAAACGAGTTGTAGCTGTGCTTCAT 1182
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GCAAGAAGATTTGATGCTGCAGATCCTAAAGCTAGGAAACGAGTTGTAGCTGTGCTGCAT 840
Query 1183 GAACTGCTCAGTTTAACAATGGAGAAAAGAGTGACATGCGCTCAATTGGATGCATTCCAC 1242
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 841 GAACTGCTCAGTTTAACAATGGAGAAGAGAGTGACATGCGCTCAGTTGGATGCATTCCAC 900
Query 1243 TCTGAGTATCTGCTTCCATCAAGACTAATACTTTGCTTGATAAAGCATCAAGGGATCTTC 1302
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGAGTATCTGCTTCCGTCAAGGCTAATACTTTGCTTGATAAAGCATCAAGGGATCTTC 960
Query 1303 TACATTACTAACAAAGGAGCAAGGGGTACGGTATTTCTCAAAGATGCTTATGCTGGTTCT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TACATTACTAACAAAGGAGCAAGGGGTACGGTATTTCTCAAAGATGCTTATGCTGGTTCT 1020
Query 1363 AATTTGATTGAGAAATGCCCATTGCTATTGTTCCATGATAGATTTGTTGCACTCTGTGGT 1422
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 AATTTGATCGAGAAATGCCCATTGTTATTGTTCCATGATAGATTTGTTGCACTCTGTGGT 1080
Query 1423 CGGAAAGAAGTCAATTTATCTAATGAAATGCAGTCTTCAAGTGTTTTCTCCTAATCTTAC 1482
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGGAAAGAAGTCAATCTATCTAATGAAATGCAGTCTTCAAGTGTTTTCTCCTAATCTTAT 1140
Query 1483 ATCAA 1487
|||||
Sbjct 1141 ATCAA 1145
Score = 424 bits (229), Expect = 2e-117
Identities = 282/306 (92%), Gaps = 10/306 (3%)
Strand=Plus/Plus
Query 1535 AGCAAATAAGATTCAGTTTATAGGACTCTGAACCTTATAAACATTTAACTGTATCATTTC 1594
||||||||||||| ||||| |||||| |||||||| |||| ||||| |||||||||| ||
Sbjct 1145 AGCAAATAAGATTAAGTTTTTAGGACCCTGAACCTGATAAGCATTTCACTGTATCATATC 1204
Query 1595 TTCTTACCGTCAGTGTCTTCTCGTGTGAAGAAATGAAACGTACTTGTTAAGATATTAAAG 1654
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1205 TTCTTACCGTCAGTGTCTTCTCATGTGAAGAAAAGAAACGTACTTGTTAAGATATTAAAG 1264
Query 1655 TTTTCACCAACAAACAGAAGCGTAAATACTATCTGGTGATTGAGGATGCT--------GA 1706
||| |||||||||||||||| ||||||| ||| ||||||||||||||||| ||
Sbjct 1265 TTTCCACCAACAAACAGAAGTGTAAATAGTATGTGGTGATTGAGGATGCTAACTTTCTGA 1324
Query 1707 AAGCCAGAACGTGTCATAGCGTCTGGA-ATGGTACCCAAGGGAGATGTGACTGGCTTATT 1765
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1325 AAGCCAGAACGTGTCACAGCGTCTG-ATATGGTACCCAAGGGAGATGTGACTGGCTTATT 1383
Query 1766 GACTAGGGAAAGGGGGTCCAGAACTCATGTGGCTTGTGAAGGCATCATGGGAAAAGAGCC 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 GACTAGGGAAAGGGGGTCCAGAACTCATGTGGCTTGTGAAGGCATCATGGGAAAAGAGCC 1443
Query 1826 AAAGGG 1831
||||||
Sbjct 1444 AAAGGG 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82770102385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5