BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79130.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477084 jgi|Araly1|477084|fgenesh2_kg.2__2214__AT1G79130.1 713 0.0
> Ahg477084 jgi|Araly1|477084|fgenesh2_kg.2__2214__AT1G79130.1
Length=550
Score = 713 bits (386), Expect = 0.0
Identities = 515/573 (90%), Gaps = 26/573 (5%)
Strand=Plus/Plus
Query 37 CAAAGATGAAGCCTCTGATTCGACGTCTGTCACGAATCGCAGACTCATCCTCCTGCAACC 96
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 CAAAGATGAAGCCTCTGATTCGACGTCTCTCACGAATCGCAGACTCATCTTCCTGCAACC 60
Query 97 GAAATCGCAGCGGCGA-TATCCATCACCCGACGTCAACGTACTCCTCTTCAGTTTTCTTG 155
||||||||||| || | ||||||||| |||||||| || |||||||| |||||||||
Sbjct 61 GAAATCGCAGCAGC-AGTATCCATCATCCGACGTCGGCG---TCCTCTTCCGTTTTCTTG 116
Query 156 GTCAAGCGAGCAACCGTCGCGTCGAGTGTTCCTTCCGGTCACGTTCCCGTCAACGTAGGC 215
|||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 117 GTCAAGAGAGCAACCGTGGCGTCGAGTGTTCCCTCCGGCCACGTCCCCGTCAACGTCGGC 176
Query 216 GAAGATAAGGAGAGGTTCGTGGTGAGTGCAGAGCTGCTGAATCATCCTGTTTTCGTTGGA 275
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAAGAGATGGAGAGGTTCGTGGTGAGTGCAGAGCTGCTGAATCATCCTGTTTTCGTTGGA 236
Query 276 TTGCTGAATCGATCAGCTCAAGAATACGGATACACTCAGAAAGGAGTTCTTCATATTCCT 335
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 237 TTGCTGAATCGATCAGCTCAAGAATACGGATATGCTCAGAGAGGAGTTCTTCATATTCCT 296
Query 336 TGTAACGTATTCGTGTTCGAGCAGGTTGTAGAGTCTCTCCGATCTGGCATCGCTGATGAT 395
||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||| |
Sbjct 297 TGTAACGTATTCGTGTTCGAGCAAATTGTGGAGTCTCTCCGTTCTGGAATCGCTGAT-A- 354
Query 396 ACATCGGAGCTCATTGCATCGTTATCTGGTGAAGATGTATCTACAGAGTAGATGATG-AT 454
|||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 355 -CATCGGAGCTCATTGCGTCGTTATCTGGTGAAGATGTATCCACAGAGTAGAAGATGCAT 413
Query 455 GATTCTGttttttttttGTTCTTCGATCTTCTCCTTTTTTATTTGAGTGATCGGAGAAAT 514
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 414 GATTCTGTTTTTTTTTTGTTCTTCGGTCTTCTCCTTTTTTATTTGACTGATCGGAGAAAT 473
Query 515 TCGTCTTGATGATTTGGATATGAAAATTGTTTTTT-CGATTTTATCTCAAAATTATCAAT 573
| || || | | | || ||||||||| |||||||||||| |||||||||||
Sbjct 474 T-------AT-AT--G-A-A--AA--TTGTTTTTTTCGATTTTATCTCCAAATTATCAAT 517
Query 574 TTAATTTGTACTGTGAAATAAAATTGAAGTGAC 606
|||||| || ||||||||||||||||||||||
Sbjct 518 TTAATTAATAATGTGAAATAAAATTGAAGTGAC 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5