BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79150.1
Length=2736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927333 jgi|Araly1|927333|scaffold_202894.1 4013 0.0
> Ahg927333 jgi|Araly1|927333|scaffold_202894.1
Length=2521
Score = 4013 bits (2173), Expect = 0.0
Identities = 2408/2521 (96%), Gaps = 18/2521 (1%)
Strand=Plus/Plus
Query 107 GTGGTGATAATGGGCAAAAATAGGCGTAAACAGAAGGTTATACCTCCACCGCTGCTTCCG 166
|||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 12 GTGGTGGTGGTGGGCAAAAGTAGGCGTAAACAGAAGGTTATACCTCCACCGCAGCTTCCG 71
Query 167 CCAGATGTAGCCGAAGAGGATATTGAGTTTTCCGACGAGGATTTGAAGTATGTCAAAGAG 226
|| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 72 CCGGATGTACCCGAAGAGGATATTGAGTTTTCCGACGAGGATTTGAAGTACGTCGAAGAG 131
Query 227 AACACAGATTACGCCCAATTCGTCTCTCAAATTGACACCGCCGCTATCAATAAGCAATGT 286
||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 132 AACACTGAATACGCCCGATTCGTCTCTCGTCTTGACACCGCCGCTATCAATAAGCAATGC 191
Query 287 GGTGGTAGAGT-AATGACAGTGGAGGATAAGTATGAAGAAGAACGATCAAAGAGGAAGAC 345
||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 192 GGTGGTAGAGTGAA-GACAGTGGAGGATAAGTATGAAGAAGAAAGATCAAAGAAGAAGAC 250
Query 346 ACTTCAGGAAGAGAAAGGGAATGGCGAGATCCTTGTGGATCCTGTTGATGTGCTCCCTGT 405
| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 251 AATTCAGGAAGAGAAAGGGAATGGCGAGATTCTAGTGGATCCTGTTGATGTGCTCCCTGT 310
Query 406 CAAGACTTTAGATGGAAAACTTCACTATCGAACAGAGTCAAAGAAGTCAAAACTAGCTGA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CAAGACTTTAGATGGAAAACTTCACTATCGAACAGAGTCAAAGAAGTCAAAACTAGCTGA 370
Query 466 AGCCGAAACAGATGAAGCAGAGAAGGATGTTCTTGAAGATGA-ACATGTATTGAACAAAT 524
|||||| ||| ||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 371 AGCCGACACAAATGAAGCAGAGAAGGATGTTCTTGATGATGATA-ATATATTGAACAAAT 429
Query 525 CTCaaagaagagaaaaagctaaaaagagtaaaagggaggcaaagaaacatgagaaagaTT 584
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 430 CTCAAAGGAGAGAAAAAGCTAAAAAGAGTAAAAGGGAGGCAAAGAAACATGAGAAGGATT 489
Query 585 TGCCTGATGAGATATTACAAGAGGAAGAAGAAACTCCCCAAGCCGCTGTTCTGGCAGAAG 644
||||| ||||||| |||||||| | |||||||| ||||||||||| ||||||||||||
Sbjct 490 TGCCTAATGAGATTTTACAAGA-G--GAAGAAACGCCCCAAGCCGCACTTCTGGCAGAAG 546
Query 645 TGAAAGAAGAACTATCTGCTGAAGAGTCATTTGAAAATAAGAAAAATAAAATCGCGGAAT 704
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 547 TGAAAGAAGAACTATCTGCTGAAGAGACATTTGAAAATAAGAAAAATAAACTCGCTGAAT 606
Query 705 TGGGAATGCTACTACTTTCTGATCCAGAGGCAAACATAAAAACTTTGAAGGATATGTTAG 764
||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||
Sbjct 607 TGGGAATGCTACTACTTTCTGATCCTGAGGCAAACATAAAATCTTTAAAGGAAATGTTAG 666
Query 765 ATATCTGCAAGGATCAGAATACGAAGATTGTGAAACTTGCCTTGTTATCTCTGTTGGCCG 824
|||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct 667 ATATCTGCAAGGATGAGAATACAAAGATAGTGAAACTTGGCTTGTTATCTCTGTTGGCCG 726
Query 825 TATTTAAAGATATTATTCCTGGCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGA 884
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 727 TATTCAAAGATATTATTCCTGGCTATCGGATTAGACTTCCTACAGAAAAGGAGCTTGAGA 786
Query 885 TGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTT 944
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 787 TGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCTACTCTATTAAAAGCGT 846
Query 945 ACAAGTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAATTG 1004
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 847 ACAAGTCATATCTGCAGAAGTTGATTATATTTGAAACGAAGTCAGTATATAACCAAATTG 906
Query 1005 CCAATCGGTGCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CCAATCGGTGCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACC 966
Query 1065 TGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGGAGACTCTGTT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGGAGACTCTGTT 1026
Query 1125 GCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACATGGTGGTGAGCTGACCGTGC 1184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GCTCTACTATCAGGTCTCTTTTCTCAAATGAAGGGAAACATGGTGGTGAGCTGACCGTGC 1086
Query 1185 AAGCTGTACGCCTGATTGCTGATCATGTCAAAGCTCACAACTGCCAACTTCATCCTAATG 1244
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1087 AAGCTGTACGCTTGATTGCTGATCATGTCAAAGCTCAGAACTGCCAACTTCATCCTAATG 1146
Query 1245 CTATCGAGGTGTTCATGTCCATTCGCTTTGATGAGGATATTGGAAAGCCTAACAAAGAGG 1304
|||| |||||||||||||||||||||||||| |||||||| ||||||| | |||||||||
Sbjct 1147 CTATAGAGGTGTTCATGTCCATTCGCTTTGACGAGGATATCGGAAAGCGTGACAAAGAGG 1206
Query 1305 ATGAACATAACAAGaaatataagaaaaataataaaagaaaaacccaggaggagcaaaatc 1364
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1207 ATGAACATAACAAGAAATATAAGAAAATTAATAAAAGAAAAGCCCAGGAGGAGCAAAATC 1266
Query 1365 aagtgcaggaaaatgagaggaagaaatCAAAGAAAGATATGATGTCTAAGATCAGAGACG 1424
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1267 AAGTGCAGGAAAATGAGAGGAAGAAATCAAAGCAAGAAATGATGTCTAAGATCAGAGACG 1326
Query 1425 AGGTTTCTGCTGATCACAGAGGAGTTACCTATGAACCGGATGCTAAGGAGCGGCGAAAGA 1484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AGGTTTCTGCTGATTACAGAGGAGTTACCTATGAACCGGATGCTAAGGAGCGGCGAAAGA 1386
Query 1485 TGCAGACAGAGACACTTTCTGCTGTTTTTGAGACCTATTTCCGTATCCTGAGAAACACAA 1544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TGCAGACAGAGACACTCTCTGCTGTTTTTGAGACCTATTTCCGTATCCTGAGAAACACAA 1446
Query 1545 TGTATACAATTGGCGAAAGAACAGAAGAAATTCCAACTTCAAATCCGGGTGCCTTTGGAT 1604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1447 TGTATACAATTGGCGAAAGAACAGAAGAAAATCCAACTTCAAATCCGGGTGCCTTTGGAT 1506
Query 1605 CGCACCCTTTGCTAGCTCCATGCTTGGATGGGTTGGCAAAATTCACCCAACAACTGGACT 1664
| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1507 CACACCCTTTGCTTGCTCCATGCTTGGATGGGTTGGCAAAATTCACCCAACAATTGGACT 1566
Query 1665 TGGACTACATGGGAGATCTAATGAACTATCTCAAGAAGCTTGCTTCTAGCAGTAGCAGCG 1724
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 1567 TGGACTACATCGGAGATCTCATGAACTATCTAAAGAAGCTTGCTTCTAGCAGTAGC-G-- 1623
Query 1725 TCTCCAACAACACAAAGCAGAAAAACTCAAAACTGTTGACAGTATCTGAACGCCTTAGGT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TCTCCAACAACACAAAGCAGAAAAACTCAAAACTGTTGACAGTATCTGAACGCCTTAGGT 1683
Query 1785 GTTGCCTTGTCGCCTTCAAAGTCATGAGGAGCAACTTAAATGCCTTGAATGTTGACTTGC 1844
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GTTGTCTTGTCGCCTTCAAAGTCATGAGGAGCAACTTAAATGCCTTGAATGTTGACTTGC 1743
Query 1845 AAGACTTCTTTGTCCAACTTTACAACCTCATTCTCGAGTACCGCCCTGGAAGAGATTCAG 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 AAGACTTCTTTGTCCAACTTTACAACCTCATTCTCGAGTACCGCCCTGGAAGAGATTCAG 1803
Query 1905 GTGTAATCTTGGCTGAGTCTCTGAAGATAATGTTGTGCGACGACAGACATCAAGACATGC 1964
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTGTAGTCTTGGCTGAGTCTCTGAAGATAATGTTGTGCGACGACAGACATCAAGACATGC 1863
Query 1965 AAAAAGCAGCTGCATTTGTAAAACGTTTAGCCACATTCGCGCTATGCTTTGGATGTGCCG 2024
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 AAAAAGCAGCCGCATTTGTAAAACGTTTAGCCACATTCGCGCTATGCTTTGGATGTGCCG 1923
Query 2025 AATCTATGTCTGCGCTAGTCACTTTGAAAACTCTGCTTCAGAAGAACGTGAAATGCAGAA 2084
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1924 AATCTATGTCTGCACTAGTCACTTTGAAAACGCTGCTTCAGAAGAACGTGAAATGCAGAA 1983
Query 2085 ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCCGGTTCAATTGCAAAATATCAGC 2144
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1984 ACCTTCTAGAGAACGATGCTGGAGGCGGCTCTGTTTCTGGTTCAATCGCAAAATATCAGC 2043
Query 2145 CGTATGCAACAGATCCTAACCTAAGCGGGGCTTTAGCAACAGTGCTTTGGGAACTCAGTC 2204
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2044 CGTATGCAACAGATCCTAACCTAAGCGGGGCCTTAGCAACAGTGCTTTGGGAACTCAGTC 2103
Query 2205 TCTTGAGTAAACATTATCATCCTGCGATCTCAACAATGGCCACAACAGTCTCCAACATGA 2264
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2104 TCTTGAGCAAACATTATCATCCTGCGATCTCAACAATGGCCACAACAGTCTCCAACATGA 2163
Query 2265 ACACTTCTCAGAGCCAAACATTTCTTTCTGCAGTGACTCCACAACAGGCTTTTGCAGATT 2324
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2164 ACACTTCTCAAAGCCAAACATTTCTGTCTGCAGTGACTCCACAACAGGCATTTGCAGATT 2223
Query 2325 TCTCTCTTGTAAAGGAATCGTTTGAGCCGAAGAACGAGTCTCGGAAATTGAACAACAAAC 2384
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 2224 TCTCTCTTGTAAAGGAATCGTTTGAGCTTAAGAACGAGTCTCGGAAACTGAACAA-A--C 2280
Query 2385 GGAAACGGGAGAGTTTGCCTGAAGAAGCTAAGAATGTTCCGGAAATAGACATGGTTAAGC 2444
||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 2281 GGAAACGAGAGAGTTTGCCTGAAGAAGCAAAGAATGCTCCGGAAATCGACATGGTTAAGC 2340
Query 2445 TCAGCAAGAAATTGAAAGAGAACTTTACTATTCTTCGGGATATAAAAGAGGACGAGAGAG 2504
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2341 TCAGCAAGAAATTGAAAGAGAACTTTACTATTCTTCGAGATATAAAAGAGGACAAGAGAG 2400
Query 2505 TGAGAATGGAGTTGTTGCAGTCTGAAGA-GAAAAAACCATTGAAGAAACAGAACAACGTG 2563
|||||||||||||| |||||||| || |||||||||||||||||||||||| ||||||
Sbjct 2401 TGAGAATGGAGTTG---CAGTCTGA-GAAGAAAAAACCATTGAAGAAACAGAATAACGTG 2456
Query 2564 GTGAAGAAGAAACTTAAGAACCCTAAATCCAAAAAGCAAATTTGAAAGGCTTTTTGTTTT 2623
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2457 GTGAAGAAGAAACTTAAGAACCCTAAATCCAAAAAGAAAATTTGAAAGGCTTTTTGTCTT 2516
Query 2624 C 2624
|
Sbjct 2517 C 2517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103224563950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5