BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79160.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845 889 0.0
Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1 150 2e-35
> Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845
Length=717
Score = 889 bits (481), Expect = 0.0
Identities = 661/740 (89%), Gaps = 43/740 (6%)
Strand=Plus/Plus
Query 106 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 60
Query 166 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCCAAATCCTCGGCGGCGCTGATGACT 225
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 61 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCGAAATCCACGGCGGCGCTGATGACT 120
Query 226 CGTGACCTTCTTGGAAACGGCAGAGGAGGAGGAGGCGATCGGTCTTTAGAGCTTGACCTC 285
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 121 CGTGACCTTCTTGGAAGCGGCAGAGGAGGAGG---CGATCGGTCATTAGAGCTTGACCTC 177
Query 286 GACCTTCAAGTCCCCACCGGTTATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTAT 345
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 GACCTTCAAGTCCCCACCGGTTATGAAAAACGTCTCGACTTGAAGTCAGGGAAAGTGTAT 237
Query 346 TTGCAACGATGCAATTCAACGAGCTCGTCGTCAATAACAAACGCAG-A--CCAAACCAAT 402
||||||||||| |||||||||||||| ||||||||||||||||||| | |||| |||||
Sbjct 238 TTGCAACGATGTAATTCAACGAGCTCATCGTCAATAACAAACGCAGCAGACCAATCCAAT 297
Query 403 CAAACAGTACCAACGTTTCAGGATTTGAATTTTCCTCCTCCGACTT-TGAACAATTCTCC 461
||||||||||| || ||||||||||||||||||||||| ||||| | | ||||||||
Sbjct 298 CAAACAGTACCGACCTTTCAGGATTTGAATTTTCCTCC---GACTTCT-AGTAATTCTCC 353
Query 462 TTTGTTGAACCTCTTCGACGATAC-A-A-CGCCGGAACTGAAGCTACTTCCGTCGTCTCG 518
||||||||||||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 354 TTTGTTGAACCTCTTCGACGACACGACAACCCCGGAACTGAAGCTACTTCCGTCGTCTCG 413
Query 519 TTCT--TC-TCG-TC-----CG---AACACTAGTAATTTACAGAGTGTATGCACACTGGA 566
|||| || || || || ||| |||||||||| ||||||||||||||||| ||
Sbjct 414 TTCTCGTCCTCTATCTATATCGCCGAACGCTAGTAATTTCCAGAGTGTATGCACACTCGA 473
Query 567 CAAGGTGAAATCAGCTCTAGAGAGGGCAGAGAGAGATCCTGCTATGTTCAAGAAACGTCA 626
||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 474 CAAGGTGAAGTCAGCTCTTGAGAGAGCGGAGAGAGATCCGGCTATGTTCAAGAAACGTCA 533
Query 627 ATCACCGGATGATACGGTTTACGATCATTATAGGACGGAGGCTGTAG-CGTCACCGGTGG 685
||| |||||| || | | || ||||||||| ||| | | ||||||||||
Sbjct 534 ATCGCCGGATCAT----T--A---TC------GGACGGAGGTTGTTGGC-TCACCGGTGG 577
Query 686 TTGCCGGATGTCCTGGTTGTTTATCGTACGTGTTGGTGATGATGAATAACCCGAAATGTC 745
|| ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 578 CGGCTGGATGTCCTGGATGTTTATCGTATGTTTTGGTGATGATGAACAACCCGAAATGTC 637
Query 746 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATCCTATGAAGAAGAAGCCTAAGATTG 805
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 638 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATTCTATGAAGAAGAAGCCTAAGATTG 697
Query 806 ATCTCAACATATCAATCTGA 825
||||||||||||| ||||||
Sbjct 698 ATCTCAACATATCGATCTGA 717
> Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1
Length=970
Score = 150 bits (81), Expect = 2e-35
Identities = 241/314 (77%), Gaps = 28/314 (9%)
Strand=Plus/Plus
Query 90 CTCTCTCTATCTCTCGATGATTCTT-GATATGGCTGCTGACGTCAGCTCTCTCGTACGGT 148
|||||||| |||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct 2 CTCTCTCTCTCTCTCTCTGCTTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGA 61
Query 149 TACTAAGC-GGTTACAAAGATGATCG-AGCGGTGGTTAAAGATTCTGCCGGAGCCAA-AT 205
|||| | ||| |||| |||||||| | ||||||| |||||||| ||||| |||| ||
Sbjct 62 TACTTGGTAGGT-ACAAGGATGATCGGA-CGGTGGTAAAAGATTCCACCGGA-CCAAGAT 118
Query 206 CCTCGGCGGCGCTGATGACTCGTGACCTTCTTGGAAACGGC-----------AG-AGGAG 253
| ||| | | || ||||| || || || || |||| |||| || |||||
Sbjct 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGGGAGGAGGAG 178
Query 254 GAGGAG--G----CGATCGGTCTTTAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTT 307
|||||| | ||| | ||| | || |||||||| ||||| |||||||| | ||| |
Sbjct 179 GAGGAGAAGGAGACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238
Query 308 ATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTATTTGCAACGAT---GCAATTCAA 364
|||||||| |||||| | |||||||||||||||||| |||||| | |||||||||
Sbjct 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298
Query 365 CGAGCTCGTCGTCA 378
||||||| ||||||
Sbjct 299 CGAGCTCTTCGTCA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5