BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79160.1 Length=966 Score E Sequences producing significant alignments: (Bits) Value Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845 889 0.0 Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1 150 2e-35 > Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845 Length=717 Score = 889 bits (481), Expect = 0.0 Identities = 661/740 (89%), Gaps = 43/740 (6%) Strand=Plus/Plus Query 106 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 60 Query 166 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCCAAATCCTCGGCGGCGCTGATGACT 225 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 61 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCGAAATCCACGGCGGCGCTGATGACT 120 Query 226 CGTGACCTTCTTGGAAACGGCAGAGGAGGAGGAGGCGATCGGTCTTTAGAGCTTGACCTC 285 |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| Sbjct 121 CGTGACCTTCTTGGAAGCGGCAGAGGAGGAGG---CGATCGGTCATTAGAGCTTGACCTC 177 Query 286 GACCTTCAAGTCCCCACCGGTTATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTAT 345 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 178 GACCTTCAAGTCCCCACCGGTTATGAAAAACGTCTCGACTTGAAGTCAGGGAAAGTGTAT 237 Query 346 TTGCAACGATGCAATTCAACGAGCTCGTCGTCAATAACAAACGCAG-A--CCAAACCAAT 402 ||||||||||| |||||||||||||| ||||||||||||||||||| | |||| ||||| Sbjct 238 TTGCAACGATGTAATTCAACGAGCTCATCGTCAATAACAAACGCAGCAGACCAATCCAAT 297 Query 403 CAAACAGTACCAACGTTTCAGGATTTGAATTTTCCTCCTCCGACTT-TGAACAATTCTCC 461 ||||||||||| || ||||||||||||||||||||||| ||||| | | |||||||| Sbjct 298 CAAACAGTACCGACCTTTCAGGATTTGAATTTTCCTCC---GACTTCT-AGTAATTCTCC 353 Query 462 TTTGTTGAACCTCTTCGACGATAC-A-A-CGCCGGAACTGAAGCTACTTCCGTCGTCTCG 518 ||||||||||||||||||||| || | | | ||||||||||||||||||||||||||||| Sbjct 354 TTTGTTGAACCTCTTCGACGACACGACAACCCCGGAACTGAAGCTACTTCCGTCGTCTCG 413 Query 519 TTCT--TC-TCG-TC-----CG---AACACTAGTAATTTACAGAGTGTATGCACACTGGA 566 |||| || || || || ||| |||||||||| ||||||||||||||||| || Sbjct 414 TTCTCGTCCTCTATCTATATCGCCGAACGCTAGTAATTTCCAGAGTGTATGCACACTCGA 473 Query 567 CAAGGTGAAATCAGCTCTAGAGAGGGCAGAGAGAGATCCTGCTATGTTCAAGAAACGTCA 626 ||||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct 474 CAAGGTGAAGTCAGCTCTTGAGAGAGCGGAGAGAGATCCGGCTATGTTCAAGAAACGTCA 533 Query 627 ATCACCGGATGATACGGTTTACGATCATTATAGGACGGAGGCTGTAG-CGTCACCGGTGG 685 ||| |||||| || | | || ||||||||| ||| | | |||||||||| Sbjct 534 ATCGCCGGATCAT----T--A---TC------GGACGGAGGTTGTTGGC-TCACCGGTGG 577 Query 686 TTGCCGGATGTCCTGGTTGTTTATCGTACGTGTTGGTGATGATGAATAACCCGAAATGTC 745 || ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||| Sbjct 578 CGGCTGGATGTCCTGGATGTTTATCGTATGTTTTGGTGATGATGAACAACCCGAAATGTC 637 Query 746 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATCCTATGAAGAAGAAGCCTAAGATTG 805 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 638 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATTCTATGAAGAAGAAGCCTAAGATTG 697 Query 806 ATCTCAACATATCAATCTGA 825 ||||||||||||| |||||| Sbjct 698 ATCTCAACATATCGATCTGA 717 > Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1 Length=970 Score = 150 bits (81), Expect = 2e-35 Identities = 241/314 (77%), Gaps = 28/314 (9%) Strand=Plus/Plus Query 90 CTCTCTCTATCTCTCGATGATTCTT-GATATGGCTGCTGACGTCAGCTCTCTCGTACGGT 148 |||||||| |||||| || ||||| | ||||||||||||||||||||||||||||||| Sbjct 2 CTCTCTCTCTCTCTCTCTGCTTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGA 61 Query 149 TACTAAGC-GGTTACAAAGATGATCG-AGCGGTGGTTAAAGATTCTGCCGGAGCCAA-AT 205 |||| | ||| |||| |||||||| | ||||||| |||||||| ||||| |||| || Sbjct 62 TACTTGGTAGGT-ACAAGGATGATCGGA-CGGTGGTAAAAGATTCCACCGGA-CCAAGAT 118 Query 206 CCTCGGCGGCGCTGATGACTCGTGACCTTCTTGGAAACGGC-----------AG-AGGAG 253 | ||| | | || ||||| || || || || |||| |||| || ||||| Sbjct 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGGGAGGAGGAG 178 Query 254 GAGGAG--G----CGATCGGTCTTTAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTT 307 |||||| | ||| | ||| | || |||||||| ||||| |||||||| | ||| | Sbjct 179 GAGGAGAAGGAGACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238 Query 308 ATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTATTTGCAACGAT---GCAATTCAA 364 |||||||| |||||| | |||||||||||||||||| |||||| | ||||||||| Sbjct 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298 Query 365 CGAGCTCGTCGTCA 378 ||||||| |||||| Sbjct 299 CGAGCTCTTCGTCA 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35873664897 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5