BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79180.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477086 jgi|Araly1|477086|fgenesh2_kg.2__2216__AT1G79180.1 1151 0.0
> Ahg477086 jgi|Araly1|477086|fgenesh2_kg.2__2216__AT1G79180.1
Length=997
Score = 1151 bits (623), Expect = 0.0
Identities = 831/922 (90%), Gaps = 52/922 (6%)
Strand=Plus/Plus
Query 3 gagagagagagaATGGGGAAGGGAAGAGCACCTTGTTGTGACAAGACCAAAGTGAAGAGA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAGAATGGGGAAGGGAAGAGCACCTTGTTGTGACAAGACCAAAGTGAAGAGA 60
Query 63 GGTCCATGGAGCCCAGAAGAAGACATTAAACTCATCTCTTTCATTCAAAAGTTTGGTCAT 122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGTCCATGGAGCCCAGAAGAAGACATAAAACTCATCTCTTTCATTCAAAAGTTTGGTCAT 120
Query 123 GAGAACTGGAGATCTCTCCCCAAACAATCTGGGCTATTGAGGTGTGGGAAGAGTTGTCGT 182
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 121 GAGAACTGGAGATCTCTCCCCAAACAATCTGGGCTACTGAGGTGTGGGAAGAGCTGTCGT 180
Query 183 CTAAGGTGGATTAACTATCTTAGGCCAGATCTGAAGCGTGGCAACTTCACTTCAGAGGAG 242
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CTAAGGTGGATTAACTACCTTAGGCCAGATCTGAAGCGTGGCAACTTCACTTTAGAGGAG 240
Query 243 GAAGAAACAATCATTAAGCTTCACCACAACTATGGGAACAAGTGGTCGAAAATCGCTTCT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGAAACAATCATTAAGCTTCACCACAACTATGGGAACAAGTGGTCGAAAATCGCTTCT 300
Query 303 CAACTTCCAGGTA-GAACAGATAACGAGATCAAGAATGTGTGGCACACTCATCTAAAGAA 361
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTTCCAGG-ACGAACAGATAACGAGATCAAGAATGTGTGGCACACTCATCTAAAGAA 359
Query 362 AAGACTGGCTCAGAGCTCAGGAACTGCAGATGAACCGGCCTCGCCTTGTTCGAGTGATTC 421
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 AAGACTGGTTCAGAGCTCAGGAACTGCAGATGAACCGGCCTCGCCTTGTTCGAGTGGTTC 419
Query 422 TGTTTCTCGTGGGAAAGATGATAAGTCATCTCACGTAGAAGATTCTTTGAACAGAGAGAC 481
|||||| ||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct 420 TGTTTCCCGTGGGAAAGACGATAAGTCGTCTCAAGTAGAAGATTATTTGAACAGAGAGAA 479
Query 482 TAATCATAGGAATGAGTTGTCTACATCTATGTCTTCTGGGGGTTCCAACCAA-CAAGATG 540
|||||| ||| | | |||||||| |||||||||| ||||||||||| ||| |
Sbjct 480 TAATCA--GGA--G--T---CTACATCTCTGTCTTCTGGTGGTTCCAACCATTCAA-ACC 529
Query 541 ATCCAAAGATAGA-CGAAC--TCAGGTTTGAGTATATAGAAGAAGCTTATAGCGAGTTTA 597
| | || ||| || | || ||| ||||||||||||||||||||||||||| || ||||
Sbjct 530 AAC-AA-GAT-GATCCAAAGATCACGTTTGAGTATATAGAAGAAGCTTATAGTGAATTTA 586
Query 598 ACGACATTATTATTCAAGAGGTAGACAAACCCGATCTGCTGGAGATACCATTTGATTCAG 657
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 587 ACGACATTATT---CAAGAGGTAGACAAACCCGATCTGCTGGAGATACCTTTTGATTCAG 643
Query 658 ATCCTGACATTTGGAGTTTCTTAGATACTTCAAACTCATTTCAACAATCCACTGCAAATG 717
||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 644 ATCCTGACATTTGGAGTTTCTTAGATACTTCAAACTC----CA-C--T-----GCAAATG 691
Query 718 AGAACAGCTCAGGCTCAAGAGCAACAACAGAAGAAGAGTCTGATGAGGATGAGGTTAAGA 777
||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 692 AGAACAGCTCAGGTTCAAGA--A-CAACAGAAGAAGAGTCTGATGAGGAAGAGGTTAAGA 748
Query 778 AATGGTTCAAGCACCTAGAAAGCGAACTCGGGTTAGAAGAAGACGATAATCAACAACAA- 836
|||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 749 AATGGTTCAAGCACCTGGAAAGCGAACTCGGGTTAGAAGAAGATGATGATCAGCAACAAC 808
Query 837 -TA--CA---AAGA-A-------GAAGAATCATCATCATCATCACTCTTGAAGAACTACG 882
|| || || | | |||||| ||||||||| ||||| ||||||| |||||
Sbjct 809 ATAAACAGGGAACACAACACAAAGAAGAAGAATCATCATCGTCACTGTTGAAGACCTACG 868
Query 883 AGCTCATGATACATTGATAAAA 904
||||||||||||||| || |||
Sbjct 869 AGCTCATGATACATTAATGAAA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5