BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79200.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927337 jgi|Araly1|927337|scaffold_202898.1 774 0.0
> Ahg927337 jgi|Araly1|927337|scaffold_202898.1
Length=520
Score = 774 bits (419), Expect = 0.0
Identities = 479/508 (94%), Gaps = 3/508 (1%)
Strand=Plus/Plus
Query 1 TAGTCCGTCGGGAAATAATGGTAAGCGAACGGAGCTCCAAGGAGAAGAAGAGAAGCAGAG 60
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 4 TAGTCCGTCGGGAAATAATGGGAAGCGAACGGAGCCCCAAGGAGAAGAAGAGAAGCAGAG 63
Query 61 CTCGGAGCGAAGATTCTTCATCTTCCGATTACGAAGAGAAAGTTAAGAGGCATCGAGGAA 120
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 64 CTCGGAGCGAAGATTCTTCATCTTCCGATTACGAAGGGAAAGTAAAGAGGCATCGAGGAA 123
Query 121 CAGAGAAAGATGATGAAAGGAGAAGTAGGAGAAGTGATAAGAAGGATAAGAAATCTCACA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 124 CAGAGAAAGATGATGAAAGGAGAAGTAGGAGAAGTGAGAAGAAGGATAAGAAATCTCACA 183
Query 181 AGCACCACAAATCCAGTACATCAAAGAAGTCCAAGGATGATAAGCCGAAAAAG-AAACAT 239
||||||||||||||||| |||| |||||||| |||||||||||||| |||||| ||||||
Sbjct 184 AGCACCACAAATCCAGTTCATCGAAGAAGTCAAAGGATGATAAGCC-AAAAAGGAAACAT 242
Query 240 ACGGAAAGCGACCACAAGCTAAAAGAGGGAATTCCAGAGCTATCAATGGAAGACTACTTC 299
| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 243 GCAGAAGGCGACCACAAGCTAAAAGAGGGGATTCCAGAGCTATCAATGGAGGACTACTTC 302
Query 300 TCGAAAAACAACGAGTTTGCTACATGGCTGAAAGAAGAAAAACGTACTTACTTTAATGAT 359
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 TCGAAGAACAACGAATTTGCTACATGGCTGAAAGAAGAAAAGCGTACTTACTTTAATGAT 362
Query 360 CTCACGACCGAAGCTGCACGAGGACTGTTCTCACGATTTGTCAAGAGATGGAACAGAGGA 419
||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 363 CTCACTACCGAAGCTGCACGAGAATTGTTCTCACGTTTTGTCAAGAGATGGAACAGAGGG 422
Query 420 AAACTCGAGTCTCGATACTACGAGGGAATCTCCACTGCCCCACGAACAGCTCACGACTGG 479
|||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 423 AAACTCGAATCTCAATACTATGAGGGAATCTCCACTGCCCCACGAACAGCTCACAACTGG 482
Query 480 ATGATCAAGCGTAGGTGaaaaaaaGCAA 507
|||||||||| |||||||||||| ||||
Sbjct 483 ATGATCAAGCATAGGTGAAAAAA-GCAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5