BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79210.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927338 jgi|Araly1|927338|scaffold_202899.1 1279 0.0
Ahg471845 jgi|Araly1|471845|fgenesh2_kg.1__1799__AT1G16470.2 881 0.0
> Ahg927338 jgi|Araly1|927338|scaffold_202899.1
Length=752
Score = 1279 bits (692), Expect = 0.0
Identities = 724/739 (98%), Gaps = 3/739 (0%)
Strand=Plus/Plus
Query 141 GGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGA 75
Query 201 AGCTGGTTCAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCACTTGGAA 260
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 76 AGCTGGTTCAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCTCTGGGAA 135
Query 261 TTAAAGCTTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTG 320
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 136 TTAAAGCTTCAAATGGAGTTGTCATTGCAACGGAAAAGAAACTTCCTTCAATATTGGTTG 195
Query 321 ATGAAGCGTCTGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGTG 380
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 196 ATGAAGCTTCTGTTCAAAAGATTCAGCATTTGACTCCCAACATTGGAACTGTTTACAGTG 255
Query 381 GTATGGGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GTATGGGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATC 315
Query 441 TCCG-TCTGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTG 499
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCCGAT-TGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTG 374
Query 500 ATGCAAGAGTTCACTCAATCGGGTGGTGTTAGGCCGTTTGGAGTTTCTCTACTGGTGGCT 559
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 375 ATGCAAGAGTTCACTCAATCGGGTGGTGTTAGGCCTTTTGGAGTTTCTCTACTGGTGGCT 434
Query 560 GGGTATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GGGTATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCA 494
Query 620 TGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGG 554
Query 680 TACACAGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAA 739
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TACACTGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAA 614
Query 740 GGTTTCGAGGGAGAAATCTCAAGCAAAAACATCGAGATTGGCAAAATCGGTACTGACAAA 799
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 615 GGTTTCGAGGGAGAAATCTCGAGCAAAAACATCGAGATTGGCAAAATCGGTGCTGACAAA 674
Query 800 GTTTTCAGGGTGCTAACACCAGCAGAAATCGATGATTACTTGGCTGAAGTCGAGTAAAAC 859
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 675 GTTTTCAGGGTGCTAACACCAGCAGAAATCGATGATTACTTGGCTGAAGTAGAGTAAA-C 733
Query 860 TTTCACTTAACCGTGCAAC 878
||| |||||||||||||||
Sbjct 734 TTTGACTTAACCGTGCAAC 752
> Ahg471845 jgi|Araly1|471845|fgenesh2_kg.1__1799__AT1G16470.2
Length=1177
Score = 881 bits (477), Expect = 0.0
Identities = 637/714 (89%), Gaps = 12/714 (2%)
Strand=Plus/Plus
Query 149 ATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGAAGCTGGTT 208
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 253 ATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGCCCATCTGGGAAGCTGGTT 312
Query 209 CAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCACTT-GGAATTAAAGC 267
|||||||||||||| || |||||||||||||| ||||||||||| || || ||||||||
Sbjct 313 CAGATAGAACATGCTCTTACAGCTGTTGGATCTGGCCAAACATC-TTTGGGGATTAAAGC 371
Query 268 TTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTT-CCTTCTATAT-TGGTTGATGAA 325
||| |||||||||||||||||||||||||||||| || |||||||| | |||||||||||
Sbjct 372 TTCTAATGGAGTTGTCATTGCAACTGAAAAGAAA-TTGCCTTCTAT-TCTGGTTGATGAA 429
Query 326 GCGTCTGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGTGGTATG 385
|| ||||||||||| ||||| ||||||||||| || |||||| ||| |||||||| |||
Sbjct 430 GCATCTGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTATACAGTGGCATG 489
Query 386 GGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATCTCCGT 445
||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 490 GGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGGAAACAGGCTGAGCAATATCTCCGA 549
Query 446 CTGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTGATGCAA 505
|||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||||||
Sbjct 550 CTGTACAAAGAACCCATCCCTGTTACCCAACTTGTAAGGGAAACCGCTACTGTTATGCAA 609
Query 506 GAGTTCACTCAATCGGGTGGTGTTAGGCCGTTT-GGAGTTTCTCTACTGGTGGCTGGGTA 564
||||| ||||||||||||||||||||||| ||| || ||||| || ||||||||||| ||
Sbjct 610 GAGTTTACTCAATCGGGTGGTGTTAGGCC-TTTCGGGGTTTCCCTGCTGGTGGCTGGATA 668
Query 565 TGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCATGGAA 624
||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 669 TGACGACAAGGGTCCCCAATTGTATCAGGTGGATCCATCTGGCTCTTATTTCTCCTGGAA 728
Query 625 AGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACAC 684
|||||| || ||||| ||||| ||||| |||||||| || || |||||||| ||||||||
Sbjct 729 AGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGGTACAC 788
Query 685 AGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGG-TT 743
|||||| ||||||||||| |||||||||||||| || ||| |||||||||| ||||| ||
Sbjct 789 AGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGCTT 848
Query 744 TCGAGGGAGAAATCTCAAGCAAAAACATCGAGATTGGCAAAATCGGTACTGACAAAGTTT 803
| |||||||| |||||||||||||| || || ||||||||||||||| ||||||||||||
Sbjct 849 T-GAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTT 907
Query 804 TCAGGGTGCTAACACCAGCAGAAATCGATGATTAC-TTGGCTGAAGTCGAGTAA 856
||||||| ||||||||||| || |||||||||||| ||| ||||||||||||||
Sbjct 908 TCAGGGTACTAACACCAGCGGAGATCGATGATTACCTTG-CTGAAGTCGAGTAA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5