BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79220.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477089 jgi|Araly1|477089|fgenesh2_kg.2__2219__AT1G79220.1 1831 0.0
> Ahg477089 jgi|Araly1|477089|fgenesh2_kg.2__2219__AT1G79220.1
Length=1374
Score = 1831 bits (991), Expect = 0.0
Identities = 1187/1278 (93%), Gaps = 28/1278 (2%)
Strand=Plus/Plus
Query 238 GAAAATTTGCTCCTTTATTTCTCCAGTTTGTTAAACTCTCGATTACGCCCTTGAAATGCA 297
||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||
Sbjct 102 GAAAATTTGCTCCTTTATTTCTCCAGTTTCTTAGTCTCTTGATTACGACCTTGAAATGCA 161
Query 298 TTCGACCGGGAAGAGAAATTTCTTAGCTGTTATCAGATTATTGTTTACTAGTTCGAGCTT 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 162 TTCGACCGGGAAGAGAAATTTCTTAGCTGTTATCAGATTACTGTTTACTAGTTCGAGTTT 221
Query 358 GGTCAGAAAGGCTGGTTGTAGAAATCTCATT-TCTGCTACCTTTACCACCAGGTGTTCGA 416
| ||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||
Sbjct 222 GATCAGAAAGGCTGGTTTTAGAAAT-TCCTTGTCTGCTACCTTTGCCACCAGGTGTTCGA 280
Query 417 CGTTATGCCTGAATGAATCTGA-AGAATGCATTGAGGATTCT--G--ATC-----TATCG 466
||||||||||||| || |||| | ||||||||| ||||||| | ||| |||||
Sbjct 281 CGTTATGCCTGAACGACGCTGACA-AATGCATTGTGGATTCTGAGCTATCGGTTGTATCG 339
Query 467 TCTAGGAGa---aa-aaaaTTTGATTATGTTGGA-GAAGTTGGTGAAAAAGAGAAAGTGA 521
||||||||| || | | | | | |||| | | ||||||||||||||||||||||
Sbjct 340 TCTAGGAGAGTGAATCACA-TAAAAAAAGTTGAATG-CGTTGGTGAAAAAGAGAAAGTGA 397
Query 522 GAGATATTACTAGTAGTCCTTTACAAGTTTTACGAAGATGGGGTTGTGATGATGATGAAA 581
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 398 GAGAGATTCCTAGTAGTCCTTTACAAGTTCTACGAAGATGGGGTTGTGATGATGATGAAA 457
Query 582 TATCCAAGCTTTTTACTCGTAGGCCTGCTTTGCAGAGAGCCAATGTTGCTCAGTTAGAGT 641
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 458 TATCAAAGCTTTTTACTCGTAGGCCTGCTTTGCAGAGAGCCAATGTTGCTCAGCTAGAGT 517
Query 642 TTAAGTTAAGCCTTCTTAAGCCACTGGGAATCACGTCTTCAGACCTTGTGAAGATTCTTA 701
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 518 TTAAGTTAAGCCTTCTTAAGCCGCTGGGGATCACGTCTTCAGATCTTGTGAAGATTCTTA 577
Query 702 ACTGTCGTCCTAGGTTCTTTAGTTGCCG---T---CTTGTCCTTGATGAAAGGATCAACT 755
| |||||||| || |||||||||||||| | ||||||||||||||||| |||||||
Sbjct 578 ATTGTCGTCCGAGATTCTTTAGTTGCCGTATTCACCTTGTCCTTGATGAAAGAATCAACT 637
Query 756 ACTTCATGGAGATTTTGGGGTCAAAAGAGGTGTTGCGCAGAGTCATTATCCGGAATCCGT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACTTCATGGAGATTTTGGGGTCAAAAGAGGTGTTGCGCAGAGTCATTATCCGGAATCCGT 697
Query 816 CACTCATGTTGTATGACCTCGATGACAAGATCAAACCCGCGATAGAATACTACAAAGGGT 875
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 698 CACTCATGTTGTATGACCTCGATGACAAGATCAAACCCGCGATAGAGTTCTACAAAGGGC 757
Query 876 TGGGCTTTAGCCAACAGGATCTTGTCGCAATGTTGATATCGCGACCCACGTTGATTCCAA 935
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 758 TGGGCTGTAGCCAACAGGATCTTGTCGCAATGTTGATATCCCGACCCACGTTGATTCCAA 817
Query 936 GAACAAACTTTAACAATGAGAAGTTTGAATACATTGAGAAAACTGGAGTCACCAGAGAAT 995
|||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 818 GAACAAACTTTAACAAAGAGAAGTTTGAATACATTCAGAAAACTGGGGTCACAAGAGAAT 877
Query 996 CCAAGATGTTTAAATATGTTGCAGTCATCATCGGGGTCTCGAGGATGGAGACAATCGAAG 1055
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 878 CCAAGATGTTTAAATATGTTGCAGCCATCATCGGGGTCTCGAGGATGGAGACAATCGACG 937
Query 1056 AGAAAGTTAGAAACTTGGAAAAGTTTGGGTTCTCGGAAGAAGAGATTTGGCACCTGTATG 1115
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 938 AGAAAGTTAGAAACTTGGAAAAGTTTGGGTTCTCAGAAGAAGAGATTTGGCATCTGTGTG 997
Query 1116 GAAAATGCCCAATCCTtctctctctctctGTTGAGAAAGTTCAGAGAAACATGACTTTCG 1175
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 998 GAAAATGCCCAATCCTTCTCTCTCTCTCAGTTGAGAAAGTACAGAGAAACATGACTTTCA 1057
Query 1176 TCATAGCCTCGATGAAACTTCCAGCTCATTCCGTGGTTAAGCACCCTTGTTTGCTTCTCC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCATAGCCTCGATGAAACTTCCAGCTCATTCCGTGGTTAAGCACCCTTGTTTGCTTCTCC 1117
Query 1236 TCAACCTCGAGTCTCGTCTAAAACCTCGTGCGGATCTCGTTAAGAGAGTCTTGGAAATGC 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1118 TCAACCTCGAGTCTCGTCTAAAACCTCGTGCGGATCTCGTTAAGAGAGTCTTAGAAATGC 1177
Query 1296 GTCTAAAGCCATTGATAAAAGAAGTGAGCATTTTCAGAGCGGTAAGGATGAGCGAGAAAC 1355
|||| |||||| | ||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1178 GTCTGAAGCCACTAATAAAAGAAGTGAACATTTTCACAGCGCTAAGGATGAGCGAGAAAC 1237
Query 1356 GGTTCTTGAAGGTTTATGTAATGTGTCATCCACAAGATATTGCA-ACCGAGCTGATGGAG 1414
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1238 GGTTCTTGAAGGTTTATGTAATGTGTCATCCAAAAGATATTGCAGAC-GAGCTGATGGAG 1296
Query 1415 TTTTACGAGAAATCCAAAAACATGAAACGTTTAGCTGAGAAATCCAAGAAATACATCCGT 1474
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1297 TTTTACGAGAAATCCAAAAACATGAAACGTTTGGCTGAGAAATACAAGAAATACATCCGT 1356
Query 1475 AAAGGATTCCCCTTTTGA 1492
||||||||||||||||||
Sbjct 1357 AAAGGATTCCCCTTTTGA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5