BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79230.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927340 jgi|Araly1|927340|scaffold_202901.1 1927 0.0
Ahg471843 jgi|Araly1|471843|fgenesh2_kg.1__1797__AT1G16460.1 880 0.0
> Ahg927340 jgi|Araly1|927340|scaffold_202901.1
Length=1180
Score = 1927 bits (1043), Expect = 0.0
Identities = 1122/1161 (97%), Gaps = 2/1161 (0%)
Strand=Plus/Plus
Query 121 TTGAGGTGGATATGGCCTCGACCCTTTTCTCCAGAACTTTCTTGGCTGCTAGTCACCGAC 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 10 TTGAGGTGGATATGGCCTCGACCCTTTTCTCCAGAAGTTTCTTGGCTGCTAGTCACCG-C 68
Query 181 -TGATTACTCCTTCTCTTCCGCAAAAGATCTTTAATCCAGCCACCTTTCTCAGTAGGTCA 239
||||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||
Sbjct 69 ATGATTGCTCCTTCTCTTCCACAAAAGATCTTTAATCCCGCCACCTTTCTCACTAGATCA 128
Query 240 CTCCACTCTCAGTTAGGCTCCGCTTCTACAGCCTATAAATCAACTACTTGGGCTCGTCGA 299
|| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 129 TTCTACTCTCAGCTAGGCACCGCTTCTACAGCCTATAAATCAACTACATGGGCTCGTCGA 188
Query 300 GCTATGGCTTCTACTGGAGTTGAGACAAAAGCCGGTTACTCCACATCATCCGTATCAACC 359
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 189 GCCATGGCTTCTACTGGAGTTGAGACAAAAGCCGGTTACTCGACATCATCCATATCAACC 248
Query 360 AGTGAACCTGTTGTTTCTGTTGATTGGCTTCATGCTAATCTTAGAGAGCCTGATTTGAAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGTGAACCTGTTGTTTCTGTTGATTGGCTTCATGCTAATCTTAGAGAGCCTGATTTGAAG 308
Query 420 ATTTTGGATGCTTCATGGTATATGCCGGATGAGCAGAGAAATCCGATCCAAGAATATCAG 479
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 309 ATTTTGGATGCTTCATGGTACATGCCCGATGAGCAGAGAAATCCAATCCAAGAATATCAG 368
Query 480 GTTGCTCATATTCCCCGCGCTCTCTTCTTTGATTTGGATGGAATATCAGATCGAAAAACT 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 GTCGCTCATATTCCCCGCGCTCTCTTCTTTGATTTGGATGGAATATCAGATCGAAGAACT 428
Query 540 AGTTTGCCACATATGTTGCCCACTGAGGAAGCTTTTGCTGCTGGTTGTTCTGCTCTTGGA 599
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGTTTGCCACATATGTTACCCTCTGAGGAAGCTTTTGCTGCTGGTTGTTCTGCTCTTGGA 488
Query 600 ATTGATAACAAAGATGAAGTGGTTGTCTATGATGGAAAGGGGATCTTTAGTGCAGCCCGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ATTGATAACAAAGATGAAGTGGTTGTCTATGATGGAAAGGGGATCTTTAGTGCAGCCCGT 548
Query 660 GTATGGTGGATGTTCCGAGTTTTTGGACATGAAAAAGTTTGGGTGCTCGATGGAGGTCTA 719
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 549 GTATGGTGGATGTTCCGAGTTTTTGGACATGAAAAAATTTGGGTGCTCGATGGAGGGCTA 608
Query 720 CCAAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCATCAGGTGATGCTATTCTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCAAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCATCAGGTGATGCTATTCTG 668
Query 780 AAAGCCAGTGCCGCAAGTGAGGCTATAGAGAAAATTTATCAAGGACAAACCGTCAGTCCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AAAGCCAGTGCCGCAAGTGAGGCTATAGAGAAAATTTATCAAGGACAAACCGTCAGTCCG 728
Query 840 ATAACCTTTCAGACTAAGTTCCAGCCACATCTAGTGTGGACACTTGATCAGGTCAAGAAC 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ATAACCTTTCAGACAAAGTTCCAGCCACATCTAGTGTGGACACTTGATCAGGTCAAGAAC 788
Query 900 AATATGGAGGATCCGACTTATCAACACATAGACGCTCGTTCCAAAGCCAGGTTTGATGGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AATATGGAGGATCCGACTTATCAACACATAGACGCTCGTTCCAAAGCCAGGTTTGATGGT 848
Query 960 ACTGCTCCAGAACCCCGTAAGGGAATAAGAAGCGGTCATATACCTGGAAGCAAATGTATC 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 849 ACTGCTCCAGAACCCCGTAAGGGAATAAGAAGCGGCCATATACCTGGAAGCAAATGTGTC 908
Query 1020 CCTTTTCCTCAGATGTTTGATTCTTGTAACACATTGTTACCAGCAGAGGAGCTGAAGAAA 1079
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 909 CCTTTTCCTCAGATGTTTGATTCTTGTAACACACTGTTACCAGCAGACGAGCTGAAGAAA 968
Query 1080 CGATTTGACCAAGAAGATATCTCACTGGACAAGCCTATTATGGCCTCGTGTGGGACTGGT 1139
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CGATTTGAACAAGAAGACATCTCACTGGACAAGCCTATTATGGCCTCGTGTGGGACTGGC 1028
Query 1140 GTAACAGCTTGCATCTTGGCAATGGGGCTTCACCGGCTGGGGAAAACCGACGTGCCGATC 1199
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1029 GTAACAGCTTGCATCCTGGCAATGGGGCTTCACCGGCTGGGGAAAACCGACGTGCCGGTC 1088
Query 1200 TATGATGGGTCGTGGACTGAATGGGCGACACAACCAGACTTGCCCATAGAGAGTGTTGAA 1259
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 1089 TATGATGGGTCGTGGACTGAATGGGCGACGCAACCAGACTTGCCCATAGAGGGTGAAGAA 1148
Query 1260 TCTTCTTCATGAAAGTCTCCA 1280
|||||||||||||||||||||
Sbjct 1149 TCTTCTTCATGAAAGTCTCCA 1169
> Ahg471843 jgi|Araly1|471843|fgenesh2_kg.1__1797__AT1G16460.1
Length=1416
Score = 880 bits (476), Expect = 0.0
Identities = 808/967 (84%), Gaps = 28/967 (3%)
Strand=Plus/Plus
Query 295 GTCGAGCT-ATGGCTTCTACTGGAGT-TGAGACAAAAGCCGGTTACTCCACATCATCCGT 352
|||||| | ||||||||| ||||| | || | |||||| |||| | ||||| || |
Sbjct 235 GTCGAG-TCATGGCTTCTTCTGGA-TCTGGGGCAAAAGTTAATTACGCAACATCCTCTAT 292
Query 353 ATCAACCAGTGAACCTGTTGTTTCTGTTGATTGGCTTCA-TGCTAATCTTAGAGA-GCCT 410
||| |||| ||||||||| || ||||||||||||||||| | ||||||||||||| | ||
Sbjct 293 ATCTACCAATGAACCTGTCGTGTCTGTTGATTGGCTTCACT-CTAATCTTAGAGATG-CT 350
Query 411 GATTTGAAGATTTTGGATGCTTCATGGTATATGCCGGATGAGCAGAGAAATCCGATCCAA 470
||| | ||| |||||||||| |||||||| ||||| ||||||| |||||||| ||||||
Sbjct 351 GATATAAAGGTTTTGGATGCCTCATGGTACATGCCACATGAGCAAAGAAATCCAATCCAA 410
Query 471 GAATATCAGGTTGCTCATATTCCCCGCGCTCTCTTCTTTGATTTGGATGGAATATCAGAT 530
|| ||||| |||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 411 GAGTATCATGTTGCTCATATTCCAGGTGCTCTCTTCTTTGATGTGGATGGAATATCAGAT 470
Query 531 CGAAAAACTAGTTTGCCACATATGTTGCCCA-CTGAGGAAGCTTTTGCTGCTGGTTGTTC 589
|||||||| | ||| | ||| ||| | ||| | ||||||||||||||||||||||||||
Sbjct 471 CGAAAAACAAATTTACTACACATGCT-ACCATCCGAGGAAGCTTTTGCTGCTGGTTGTTC 529
Query 590 TGCTCTTGGAATTGATAACAAAGATGAAGTGGTTGTCTATGATGGAAAGGGGATCTTTAG 649
|||||||||||| || |||||||||| ||||||||| |||||||||| |||| |||||||
Sbjct 530 TGCTCTTGGAATCGAGAACAAAGATGGAGTGGTTGTGTATGATGGAATGGGGCTCTTTAG 589
Query 650 TGCAGCCCGTGTATGGTGGATGTTCCGAGTTTTTGGACATGAAAAAGTTTGGGTGCTCGA 709
|||||| ||||||||||||||||| || | ||||||||||| ||||| ||||| || ||
Sbjct 590 TGCAGCTCGTGTATGGTGGATGTTTAGAATCTTTGGACATGACAAAGTATGGGTACTTGA 649
Query 710 TGGAGGTCTA-CC-AAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCATCAGGT 767
|||||| || || || ||||||||| || || |||||||||||||| ||||| ||| ||
Sbjct 650 TGGAGG-CTTGCCGAA-ATGGCGTGCTTCCGGCTATGATGTTGAATCCAGTGCTTCAAGT 707
Query 768 GATGCTATTCTGAAAGCCAGTGCCGCAAGTGAGGCTATAGAGAAAATTTATCAAGGACAA 827
||||| ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct 708 GATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAGAAAATTAATCAAGGACAA 767
Query 828 ACCGTCAGTCCGATAACCTTTCAGACTAAGTTCCAGCCACATCTAGTGT-GGACACTTGA 886
|| | ||||| ||||| |||||||| ||||||| ||||||||| || | || |||||||
Sbjct 768 ACAATTAGTCCAATAACTTTTCAGACGAAGTTCCGGCCACATCTTGTATTGG-CACTTGA 826
Query 887 TCAGGTCAAG-AACAATATGGAGGATCCGACTTATCAACACATAGACGCTCGTTCCAAAG 945
|||||| ||| || || || |||||| ||||||||| ||||| || | || || ||||
Sbjct 827 TCAGGTGAAGCAA-AACATCGAGGATAAGACTTATCAGCACATCGATGGGCGATCAAAAG 885
Query 946 CCAGGTTTGATGGTACTGCTCCAGAACCCCGTAAGGGAATAA-GAAGCGGTCATATACCT 1004
| || ||||| |||| |||||||||||| || ||||||||| || | |||||||||||
Sbjct 886 CTAGATTTGACGGTATTGCTCCAGAACCTCGGAAGGGAATACCGA-GTGGTCATATACCC 944
Query 1005 GGAAGCAAATGTATCCCTTTTCCTCAGATGTTTGATTCTTGT-AACACATTGTTACCAGC 1063
|| ||||| ||| | |||||||| || ||||||||||| | | || ||| || | |||||
Sbjct 945 GGTAGCAAGTGTGTACCTTTTCCCCAAATGTTTGATTCCTCTCAA-ACAATGCTGCCAGC 1003
Query 1064 AGAGGAGCTGAAGAAACGATTTGACCAAGAAGATATCTCACTGGACAAG-CCTATTATGG 1122
||||||||||||||| || ||||| |||||||| || |||||||||| | || || |||
Sbjct 1004 AGAGGAGCTGAAGAAGCGGTTTGAACAAGAAGACATTTCACTGGACA-GTCCGATCGTGG 1062
Query 1123 CCTCGTGTGGGACTGGTGTAACAGCTTGCATCT-TGGCAATGGGGCTTCACCGGCTGGGG 1181
|||| ||||| || |||||||||||||| || | ||||| |||| ||| | || |||||
Sbjct 1063 CCTCATGTGGAACCGGTGTAACAGCTTGTAT-TGTGGCATTGGGACTTTATCGTCTGGGA 1121
Query 1182 AAAACCGACGTGCCGATCTATGATGGGTCGTGGACTGAATGGGCGACAC-AACCAGACTT 1240
|||||||| ||| | |||||||||||||| |||||||||||||| || | ||||| ||||
Sbjct 1122 AAAACCGATGTGGCAATCTATGATGGGTCTTGGACTGAATGGGCAAC-CGAACCAAACTT 1180
Query 1241 GCCCATA 1247
|||||||
Sbjct 1181 GCCCATA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5