BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79245.1
Length=4780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477093 jgi|Araly1|477093|fgenesh2_kg.2__2223__AT1G79245.1 1594 0.0
Ahg940077 jgi|Araly1|940077|scaffold_600621.1 226 1e-57
Ahg946644 jgi|Araly1|946644|scaffold_702873.1 63.9 1e-08
Ahg946212 jgi|Araly1|946212|scaffold_702441.1 60.2 1e-07
> Ahg477093 jgi|Araly1|477093|fgenesh2_kg.2__2223__AT1G79245.1
Length=4237
Score = 1594 bits (863), Expect = 0.0
Identities = 1248/1424 (88%), Gaps = 66/1424 (5%)
Strand=Plus/Plus
Query 318 CTTACGCGTCTCTGATTTTTGTTTTCTTCTCTACGTTTCTTATTCGTCTCGTCTCGCAGt 377
|||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 231 CTTACGCGTCTCTGATTTTTGTTTTCTTCTCTACGTTTCTTA----T-TCGTCTCGAAGG 285
Query 378 ttttttGGAAGCTAATTATGATCCGATCATCG---C-----TTTCGATTCTGTTGTTGTA 429
|||||||||||||||||| |||| |||||||| | ||||| |||||||||||||
Sbjct 286 TTTTTTGGAAGCTAATTACGATCGGATCATCGATTCTGAATTTTCGTTTCTGTTGTTGTA 345
Query 430 GAGTGTGGATGAGGCTATGATCGATCGGTGATTGtttttttCTGGATTTTTGTCACGCGT 489
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 346 GATTGTGGATGATGCTATGATCGATCGGTGATTG--TTTTTCTGGATTTTTGTCACGCGT 403
Query 490 TTTCTCTAGGATACGTCTTCAAGCGAATTCTGATCCGATCTTCGTCCTCGCTTCTGAGTT 549
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 404 TTTCTCTACGATACGTCTTCAAGCGAATTTTGATCCGATCTTCGTTCTCGCTTCTGAGTT 463
Query 550 TTCTCTTCTCACTGATTAATTGATT-TTCTAGGTTTTGGTTTATAAACTGCATCAAGTGG 608
||||||| ||||||||| ||| ||| ||||||| ||||||| |||| |||||| |||||
Sbjct 464 TTCTCTTTTCACTGATT-ATTTATTCTTCTAGGGGTTGGTTTCTAAATTGCATCGAGTGG 522
Query 609 TCT-TTCTAATTCATGTTATTTGCTCCTCGTTTTA---TTG--TT-GATTTAGATTGTGG 661
||| ||||||| ||||||||||||| ||||||||| ||| || ||||||||||||||
Sbjct 523 TCTGTTCTAATCCATGTTATTTGCTTCTCGTTTTATTGTTGATTTAGATTTAGATTGTGG 582
Query 662 AGGATGCTATGATTGATCGGTGATGGCTTTGATTGATCCTTGTCACGCGGTTTCTTAGGA 721
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 AGGATGCTATGATTGATCGGTGATGGCTTTGATTGATCCTTGTCATGCGGTTTCTTAGGA 642
Query 722 TCTTTTGTCCCTTCTATTCCAAATTTTTAATTCCTATGCCGtttttttCTTCTATATAAG 781
||||||||| ||||| ||| |||||||||||||||||||| |||||| | || ||||||
Sbjct 643 TCTTTTGTCT-TTCTACTCCCAATTTTTAATTCCTATGCCGATTTTTT-T-CTGTATAAG 699
Query 782 CGGTAAATATCATCTCTATTGGTTGCAGATCGTCGAGGCACCGGAATTGCTCCGATAAAT 841
|| ||||||||||| | || | ||||||||||| ||||||||| ||||||| |||||||
Sbjct 700 CGAAAAATATCATCTTTCTTTGATGCAGATCGTCAAGGCACCGGGATTGCTCTGATAAAT 759
Query 842 CTCTCATTCTTC-TCTGTCATCGATTTAGGTTTCGTCTGATTTCTCTTGTTACATCTGTT 900
|||| |||| | ||| ||||||||||||||||| ||||||||||| || |||| || ||
Sbjct 760 ATCTC-TTCT-CGTCTATCATCGATTTAGGTTTCTTCTGATTTCTCGTGCTACAGCTTTT 817
Query 901 TT-ATCTAACCACAATTACCTCTGTTCTATTTCGTCTCTGCTAAT-T-GAAGGATGTG-G 956
|| || | || | | ||||||||||||| ||||||||| | || | |||||||||| |
Sbjct 818 TTTATTTT-CC-C--T-ACCTCTGTTCTATCTCGTCTCTGTTTATCTTGAAGGATGTGTG 872
Query 957 TTGATCTGTCGTCGCTCCCTTTTAC-T-T--T-CTGGCGGtttcttctttccctttgctt 1011
| ||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||
Sbjct 873 T-GATCTGTCGTCGCTCCCTTTTACCTCTGCTTCTGGCGGTTTCTTCTTTCCCTATGCTT 931
Query 1012 ccttttt-ggagttcttagattacctgatttcttttcttttctGAATTTCTGGAGAAATT 1070
||||||| ||| || |||||| ||| ||||||||||||||||||| ||| ||||||||||
Sbjct 932 CCTTTTTAGGATTT-TTAGATGACCAGATTTCTTTTCTTTTCTGATTTTTTGGAGAAATT 990
Query 1071 TCTACGTGTTAGATTGTGTAGATGTTGAAGGCATTGTTGGAGGGAGGATGGTTTACGTAT 1130
|| | |||||| | || ||||||| ||||||||||||||||||||||||||| || ||
Sbjct 991 TCCA--TGTTAGGTCGT--AGATGTTCAAGGCATTGTTGGAGGGAGGATGGTTTGCGCAT 1046
Query 1131 GAGTTGGTGTTTTTGGTTTCTTCTCTTCTATACAACTTT-TG-GTCTAATTATTGTTTTA 1188
|| ||||||||| |||||||||| | |||||||| |||| | | || |||||| ||||
Sbjct 1047 GATTTGGTGTTTATGGTTTCTTCGCATCTATACACCTTTGTTTGCCTTCTTATTGATTTA 1106
Query 1189 TTTAATATTGGCTAATGTTGGTGAGGTATGATTTCGTTC-TCTGTGTCTTGTTGTGTTTT 1247
|||||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||
Sbjct 1107 TTTAATATTGGCTATTGTTGGTGAGGTATGATTTT-TTCCTTTGTGTCTTGTTGCGTTTT 1165
Query 1248 CCAGATTCTCTTCATCAATCAATTCAGTCTGTTTCTCTTCTGTGTACACATTCA-GATGA 1306
|||||||||||||||||||||||||| | ||||||||| | ||||||||||||| | |||
Sbjct 1166 CCAGATTCTCTTCATCAATCAATTCACTTTGTTTCTCTGCCGTGTACACATTCAAG-TGA 1224
Query 1307 AAGATGAACATATATTCCTTGCAGACGAGTTTTTTCCTATCTCTTGTCCTTTTTATAAGT 1366
|||||| ||||||||||| || |||||||||||| ||| ||||||||||||| |||||
Sbjct 1225 CAGATGATTATATATTCCTTCCAAACGAGTTTTTTCTTATATCTTGTCCTTTTTTTAAGT 1284
Query 1367 AGTTATTCTATTGAA-GTCTTCAAGTTTCTCAGTAATG-CTATGTCTTAGCTCCTCTCAT 1424
||| |||||| ||| | ||||||||||||||||| | | ||||||||||||||| |||
Sbjct 1285 TGTTTTTCTATAGAACGACTTCAAGTTTCTCAGTAGTAAC-ATGTCTTAGCTCCTCCCAT 1343
Query 1425 GTGGTTTATTCAGGTTTTGTTCCTCTTTGCCTCCGGGATCTGTTGCAATCTATTTGTTCT 1484
|||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1344 GTGGTTTATTCAGGTTCCGTTCCTCTTTGCCTCCGGGATCTGTTGCAGTATGTTTGTTCT 1403
Query 1485 AACATACGCCCTGGTTAACTGGTCTATTCCTCTTTCTCTCTATTTATAGTGTTTGATCCT 1544
||||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1404 AACATACTCCCTGGCTAACTGGTCTATCCCTCTTTCTCTCTGGTGATAGTGTTTGATCCT 1463
Query 1545 ACTCTCTTATGCTTGTGACGGTGtttttttttATGTTAAGTGTCCCA-TTCTTTTAGGTT 1603
||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1464 ACTGTCATATGCTTGTGACGATGTTTTTTTTTATGTTAAGTGTCCCCCTTCTTTTAGGTT 1523
Query 1604 TTTTGAAGATGCAAAGAAGGCTAGTTCTGTCTCAG-TGTATTCTGAAAGATATCTTTGAT 1662
|||||| ||||||||||||||||||||||||| || | |||| |||||||| ||||||||
Sbjct 1524 TTTTGAGGATGCAAAGAAGGCTAGTTCTGTCTGAGAT-TATTTTGAAAGATGTCTTTGAT 1582
Query 1663 CTGTCGTGGTT-CCTGTTACCT-TTCTGGCGGTGTCTTATCTCC 1704
||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 1583 CTGTCGTGGTTTCCTGTTACCTCTT-TGGCGGTGTCTTATCTCC 1625
Score = 1027 bits (556), Expect = 0.0
Identities = 777/878 (88%), Gaps = 38/878 (4%)
Strand=Plus/Plus
Query 1758 ttttaAATCGTAGAGGTCAAGGCATTGTTGGAGGGAAGGATGGTATGAGTTTAATTTTGT 1817
||||| |||||||||||||||||||||| |||||||| |||||||| || |||||||||
Sbjct 1652 TTTTAGATCGTAGAGGTCAAGGCATTGTGGGAGGGAAAGATGGTATTCGTATAATTTTGT 1711
Query 1818 GTTTCTGGTTACTTCTCATCTACACA-CTTTTTTCCCCCTAATTGTTTTATCTAATATTG 1876
|||||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct 1712 GTTTCTGGTTACTTCTCATCTATACACCTTTTTT-CCCCTAATTGATTTATCTAATATTG 1770
Query 1877 GCTATTATTGTCAGTGAGGTATGATTTGTCCTCTGTGTCTTATGTTTCCCAGAATTTTCT 1936
|||||| || | ||||| |||||||||||||||||||| | |||||||||| |||||||
Sbjct 1771 GCTATT-TT-T-GGTGAGCTATGATTTGTCCTCTGTGTC-TGTGTTTCCCAG-ATTTTCT 1825
Query 1937 TCACCAATCACTTCACTACGTTTCTCTGCTGTGTACACACTTGAAAGATGATCATATATT 1996
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TCACAAATCACTTCACTCCGTTTCTCTGCTGTGTACACACTTGAAAGATGATCATATATT 1885
Query 1997 CCTTCCAAACGAGTTTGTTCTTATACCTTGTCCTTTTAAGT-AGTTTTTGTACTGAGCAT 2055
|||||||||||||| ||||||||| |||||||| |||||| |||||||||||| | | |
Sbjct 1886 CCTTCCAAACGAGTCTGTTCTTATGTCTTGTCCTATTAAGTAAGTTTTTGTACTTAACGT 1945
Query 2056 TTTCAAATATCTTAGGATATCTATCTCTGAGCTCCTCTGATGGAGAAGGCTTGGCCTGAG 2115
|||||||||||||||| | | || |||||||||||||| || ||||||||||| |||||
Sbjct 1946 TTTCAAATATCTTAGG-T-TAAATATCTGAGCTCCTCTGGTGTAGAAGGCTTGGTCTGAG 2003
Query 2116 GTCTGGACTGTACCATCAGGGAGTTCTCAACATGACTTGATTTTTGATTTTTCAGGTTAA 2175
|| ||||||||||| |||||||||| ||||||||||||| | |||||| |||||||||||
Sbjct 2004 GTTTGGACTGTACCGTCAGGGAGTTTTCAACATGACTTGCTATTTGATGTTTCAGGTTAA 2063
Query 2176 AGGTAGATTTTCGTAGCGATGTTGGCATTTCTGTTTTAAGCCTAAGGCCCTGTCTTTTGT 2235
| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 AAGTAGATCTTCCTAGTGATGTTGGCATTTCTGTTTTAAGCCTAAGGCCCTGTCTTTTGT 2123
Query 2236 TATAGATATTCAAGCTTATAAAAGGGAAAAGGTTCAGGTTTACTAAATGGATTCTTTCCC 2295
||||||||||| || || |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 2124 TATAGATATTCGAGGTTCTAAAAGAGAAAAGCTTCAGGTTTACTAAATAGATTCTTTCCC 2183
Query 2296 CTTTATCTCTGTTGGTGTTATCTCTCATGCTACATCTATATTAGTGATGGCTTGTTTTTA 2355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 CTTTATCTCTGTTGGTGTTATCTCTCATGCTACATCTATATTAGTGATGGCTTGTTTTTA 2243
Query 2356 TGTATGTGAAGTGCTCCGCTCCCCTA-TATA-GG-TATGTTGAGGATGCAAAGGTGGCAA 2412
||| | ||||||||| ||||||| | || || ||||||||||||||||||| |||||
Sbjct 2244 TGT--G--AAGTGCTCCTCTCCCCTTGTTTATGGGTATGTTGAGGATGCAAAGGAGGCAA 2299
Query 2413 GTTCTACTTTGATCTATTTTTCTCGAAATTTTCATCTACAGTCCT---CTTTTCATTGGA 2469
||||| |||||| |||||| |||||||||||||||||||||| | |||||| ||| |
Sbjct 2300 GTTCTGTTTTGATTTATTTTCCTCGAAATTTTCATCTACAGTCTTTGTCTTTTCCTTGAA 2359
Query 2470 GATGTCTCTATTTCTGGTTCTATGCTCTGCATTTTCCTATGGTTTAAATGCTAATCACTT 2529
|||||||||||||||| || |||||||| | | | ||||||||||||
Sbjct 2360 GATGTCTCTATTTCTGATTTTATGCTCT--A-------A------A--TGCTAATCACTT 2402
Query 2530 CGGCTCGAGATCTACTCTTTCTACATGAATTCATTATCTTCATATAGGAATTTGGATGAT 2589
||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2403 CGGCTTGAGATCTTCTCTTTCTGTATGAATTCATTATCTTCATATAGGAATTTGGAAGAT 2462
Query 2590 GCTAGGACGA-TTCTGTTTCGACCTGTTCGCCTAGATT 2626
|| ||||| | ||||| |||||||||||||||||||||
Sbjct 2463 GCAAGGACAAGTTCTGCTTCGACCTGTTCGCCTAGATT 2500
Score = 833 bits (451), Expect = 0.0
Identities = 648/735 (88%), Gaps = 45/735 (6%)
Strand=Plus/Plus
Query 2952 GAGGTTCCATCTCTGGTTGGATTCAGGTG--TTTTGAGCTAATCTTCTTCTG--GGTTTA 3007
|||||||||||| ||||| |||||||||| ||||| | ||| | | |||| ||||||
Sbjct 2501 GAGGTTCCATCTTTGGTT-GATTCAGGTGTCTTTTGTG--AAT-TAC-TCTGTAGGTTTA 2555
Query 3008 CTTCTCTACCATAC-T-TTCTACCGATTTGAAGATTTGTCTTCTGTACCTTTGATGATGA 3065
|||||||||||||| | ||||||||||||||||||||||||| |||||| || ||||||
Sbjct 2556 CTTCTCTACCATACTTGTTCTACCGATTTGAAGATTTGTCTTTTGTACC-TT--TGATGA 2612
Query 3066 TTCTCAGTTTTGCAGCAATGACTCAGTTTTTCGCCTTCTAGTCATTAAACTACTTTCCCA 3125
|||||||||||| ||||||| ||||||||| ||||||||||||| | || || | |||
Sbjct 2613 TTCTCAGTTTTGTAGCAATGTCTCAGTTTTGCGCCTTCTAGTCA-TGAA--AC--TGCCA 2667
Query 3126 CAATGAGATAC-TTAGTGTTTTTGTAGGTTCTTTCACACTTGTTAGCAAGGGTATATG-- 3182
||||||||| | ||||||||||||||||| |||||||||||||||| || || ||||
Sbjct 2668 CAATGAGAT-CTTTAGTGTTTTTGTAGGTACTTTCACACTTGTTAG-AAATGT-TATGAA 2724
Query 3183 TATGTTGCCGTTCTCAGAATTTGGTAGGTATGAATCACAGATGTCATTGTTTATTATTGA 3242
| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 2725 TTTGTTGTCGTTCTCAGAAGTTGGTAGGAATGAATCACAGATGTCATTGTTTATTTTTGA 2784
Query 3243 TAACATAAGTGATTCTTGCTGGTAGTGTGACCTCTTGAGGGCAGGCTCATAGAAGATGAA 3302
|||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 2785 TAACAT--GTGATTCTTGCTGGTAGTGTGAAATCTTGAGGGCAGGCCCATAGAAGGTGAA 2842
Query 3303 GAGCCTCTTGGTTTTGATGATAATG-CTCCCTACTTCTGAGTTCTGAGGTTTCTTTATTC 3361
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 2843 GAGCCTCTTGGTTTTGATGATAATGCCTCCCTACTTCTGACTTCTGAGGTTTCTTTCTTC 2902
Query 3362 CTGGGTTGTAGCTGGTTTAATGGTTCTGTAGACATTTGATAATGAAGTCTCTCACTTCAT 3421
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2903 CTGGGTTGTAGCTGGTTTAATGGTTCTGTAGACATTTGATAATGAAGTC-CTCACTTCAT 2961
Query 3422 TTTGTTTGGGTGATGTAAAATGTTGTCAGTGGATTTTAGGTGAGGCTTAATCTCATGGAT 3481
||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2962 TTTGTCTGGGTGATGTAATATGTTATCAGTGGATTTCAGGTGAGGCTTAATCTCATGGAT 3021
Query 3482 TATTCTTTTGAAATCCCCTCAGGTGAATCAGTGAAAATTGAGAAAGTGA--TG--TTC-- 3535
||||||| || ||| | ||||||| |||||||||||||||||||| ||| | |||
Sbjct 3022 TATTCTTGTGGAATGCTCTCAGGTTAATCAGTGAAAATTGAGAAAATGACCTTACTTCTG 3081
Query 3536 ---AACTTCTTATCTCTT-AATCCTTCATTTGCTCTGTCACACATTGAAGCCTATTTTC- 3590
|||| || ||||||| || |||| |||||| ||||||||||||||||||||||||
Sbjct 3082 CTCAACTCCTCATCTCTTGAA-CCTTAATTTGCCCTGTCACACATTGAAGCCTATTTTTT 3140
Query 3591 GGTTGCAGTTTGTTAAGTTTTCATGGGAAGCGTTGTCTTTGGAGT-GTTC--TGAAGTTG 3647
||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 3141 GGTTGCAGTTTGTGAAGTTTTCATGGGAAGCATTGTCTTTGGAGTTGTTCACTGAAGTTG 3200
Query 3648 ACTTT-AATCCTGAA 3661
| ||| |||||||||
Sbjct 3201 ATTTTTAATCCTGAA 3215
Score = 555 bits (300), Expect = 1e-156
Identities = 355/382 (93%), Gaps = 1/382 (0%)
Strand=Plus/Plus
Query 4393 TTTTATTGTATGTATATATATACATACAAAGATTATATCTCCGAGTTTGGAATCGTCTCT 4452
|||| || ||| ||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 3857 TTTT-TTTTATATATGTATATATATGCAAAGATTATATCTCCGAGTTTGGAATCGTCTCT 3915
Query 4453 CATCTTGTTTTTGTTGTTGACGACTGGGCTTTAGAAGAATTAAGGAGTCAGAGCAATGAG 4512
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
Sbjct 3916 CATCTTGTTTTTGTTGTTGTTGACAGGGCTTTAGAAGAATTAAGGGGTCAGAGCAATGGG 3975
Query 4513 AATGTGGACATGAGTATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGATGATGTTCA 4572
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3976 AATTTGGACATGAGTATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGATGATGTTCA 4035
Query 4573 AAACTGGGATGAAGAGGTTTGAGGAACTTGCAGTCAAACGCCGAGCAAAGAAAAAGAAAG 4632
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4036 AAACTGGGATGAAGAGGATTGAGGAACTTGCAGCCAAACGCCGAGCAAAGAAAAAGAAAG 4095
Query 4633 CTAAAGCTGAAGCGGAAGTAAAGGATCGCTTGCAACACTTGAGAATCTGATCAATAAATC 4692
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 4096 CCAAAGCTGAAGCGGAAGTAGAGGATCGCTTGCAACACTTGAGAATCTGATCAAAAAATC 4155
Query 4693 TTTTCGATTTAATGAATTAAATAAGCTCTTGTATTGTTTGTATCAATAACAATTTAGTGT 4752
| ||| ||| |||| | ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 4156 TCTTCCTTTTTATGACTGAAATAAGCTCTTGTATTGTTTCTATCAATAACAATTTAGTCT 4215
Query 4753 GGCAATAAAATTGATGGGTTTT 4774
| ||||||||||||||| ||||
Sbjct 4216 GTCAATAAAATTGATGGTTTTT 4237
Score = 283 bits (153), Expect = 7e-75
Identities = 212/238 (89%), Gaps = 14/238 (6%)
Strand=Plus/Plus
Query 37 AGTTTTCTCTACGCGTTCGCTGGTGATATTCTTCTAAACGCGTCTCTGA-TTTGTTTGAA 95
|||||||||||| || ||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 1 AGTTTTCTCTACACGGTCGCTGGGGATATTCTTCTAAACGCGTCTCTGATTTTTTTTGAA 60
Query 96 TCGATCATCGTTCCTTCTTCTGGA---T---TTTCCATCGAT-ATTTGATTTTTCTAGGG 148
||||||||||||||| |||||||| | ||||||| ||| |||| ||||||||||||
Sbjct 61 TCGATCATCGTTCCTACTTCTGGATTTTCACTTTCCATGGATAATTT-ATTTTTCTAGGG 119
Query 149 TTTGTTTCTAAATTGCATCGATGGCTTTTTATGTTCATGCGATTTACTTTT-CCCTCTGT 207
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 120 TTTGTTTCTAAA--GCATCGATGGCTTTTTATGTTCATGCGATTTACTTTTTCCCTGTGT 177
Query 208 TATTCTAGATTGTTGTTCGATGATTTGATCGTTCAGG-GATGGATTTGATGGATCTTA 264
||||||||||||| ||| |||||||||||||||| || |||| ||| ||||||||||
Sbjct 178 TATTCTAGATTGTGGTTTGATGATTTGATCGTTC-GGTGATGTCTTTTATGGATCTTA 234
Score = 241 bits (130), Expect = 5e-62
Identities = 157/170 (92%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 4230 GTCGTGGATGATCCATAATTGGATCCAATTATCTCGTGGAGCAAAAGCCACAATAGCTTC 4289
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 3592 GTCGTGGATGATCCATCATTGGATCCAATTATCTCGTGGAGCAAGAGCAACAATAGCTTC 3651
Query 4290 ATCGTT-GGAATCTGGAAGCGCTTCACCGAGAAGTTCTGCCGAAATCGATAGAATTTGGC 4348
|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 3652 ATCGTTTGGAATCTGGAAGGGCTTCACCGAGAGGTTCTGCCGAAATCGATAGAATTTGGC 3711
Query 4349 AGACATTACTTGGAGTTTATGACCGAACTCAACTTACATGTAAGTTTTAT 4398
| |||||||||| |||| |||||||||||||| || |||| ||||||||
Sbjct 3712 AAACATTACTTGAAGTTCATGACCGAACTCAAGTTTTATGTGAGTTTTAT 3761
Score = 191 bits (103), Expect = 5e-47
Identities = 149/170 (88%), Gaps = 7/170 (4%)
Strand=Plus/Plus
Query 3716 TTACAGGAGTGTCTATGCCGTTGCAGTATTCGAGGATCGCTTTGATCTGCCAGTCGTTCC 3775
|||||| ||||||| ||| ||| |||||||||||| | ||||| ||||||||||||||||
Sbjct 3237 TTACAGAAGTGTCTGTGCTGTTTCAGTATTCGAGGTTTGCTTTTATCTGCCAGTCGTTCC 3296
Query 3776 TTGTTACCTTTTTCGCTTTTGCAGTTCTTTCTTACTTGCCTTGCTTTTCTCTCGTTCATG 3835
||||||| ||||| ||||||| ||||| ||| ||||||||||||||| |||||||
Sbjct 3297 TTGTTACTTTTTTTGCTTTTG---TTCTT----ACTGGCCTTGCTTTTCTCTGGTTCATG 3349
Query 3836 TATTACTTGATGCAAGTCTTGAAACTTTCCCGATATTGGACCAAACTCTT 3885
|||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 3350 TATTACTTGATGCAAGTCTTGACACTTTCCCGAGATTTGACCAAACTCTT 3399
Score = 143 bits (77), Expect = 1e-32
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 4438 TTTGGAATCGTCTCTCATCTTGTTTTTGTTGTTGACGACTGGGCTTTAGAAGAATTAAGG 4497
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 3766 TTTGGAATCGTCTCTCATCTTGTTTTTGTTGTTGTTGACAGGGCTTTAGAAGAATTAAGG 3825
Query 4498 AGTCAGAGCAATGAGAATGTGGACATGAGTATTTT 4532
|||||||||||| |||| ||||||||||||||||
Sbjct 3826 GGTCAGAGCAATGGGAATTTGGACATGAGTATTTT 3860
> Ahg940077 jgi|Araly1|940077|scaffold_600621.1
Length=456
Score = 226 bits (122), Expect = 1e-57
Identities = 170/193 (88%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 4188 TGTTTGAAGTTATGTTGAGTACATTCTACAAG-A-AGATACAATGTCGTGGATGATCCAT 4245
||||| ||| |||||| | ||||||||||| | | ||||||||||||||||||||| |
Sbjct 16 TGTTTTAAG-GATGTTGTCTTCATTCTACAAGAACATATACAATGTCGTGGATGATCCTT 74
Query 4246 AATTGGATCCAATTATCTCGTGGAGCAAAAGCCACAATAGCTTCATCGTT-GGAATCTGG 4304
|| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 75 CATCGGATCCAATAATCTCGTGGAGCAAAAGCAACAATAGCTTCATCGTTTGGAATCTTG 134
Query 4305 AAGCGCTTCACCGAGAAGTTCTGCCGAAATCGATAGAATTTGGCAGACATTACTTGGAGT 4364
||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 135 AAGGGCTTCAGAGAGAGGTTCTGCCGAAATCGATAGAATTTGGCAAACATTACTTAAAGT 194
Query 4365 TTATGACCGAACT 4377
|||||||||||||
Sbjct 195 TTATGACCGAACT 207
Score = 198 bits (107), Expect = 3e-49
Identities = 145/163 (89%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 4479 GGCTTTAGAAGAATTAAGGAGTCAG-AGCAATGAGAATGTGGACATGAGTATTTTGTGAG 4537
||||||| ||||||||||| ||| | | || || |||| ||||||||||||||| |||||
Sbjct 218 GGCTTTAAAAGAATTAAGGGGTCTGCA-CAGTGGGAATTTGGACATGAGTATTTCGTGAG 276
Query 4538 AGGCCAACCTGAGCTTTTGGTGAAGATGATGTTCAAAACTGGGATGAAGAGGTTTGAGGA 4597
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 277 AGGTCAACCTGAGCTTTTGGTGAAGATGATGTTCAAAACTGGGATGAAGAGGATTGAGCA 336
Query 4598 ACTTGCAGTCAA-ACGCCGAGCAAAGAAAAAGAAAGCTAAAGC 4639
|||||||| | | ||| ||||||||||||||||||| |||||
Sbjct 337 ACTTGCAG-CTATACGTAGAGCAAAGAAAAAGAAAGCCAAAGC 378
> Ahg946644 jgi|Araly1|946644|scaffold_702873.1
Length=403
Score = 63.9 bits (34), Expect = 1e-08
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 4528 ATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGAT 4564
|||||||||||||||||||||||||||||| ||||||
Sbjct 286 ATTTTGTGAGAGGCCAACCTGAGCTTTTGGAGAAGAT 322
> Ahg946212 jgi|Araly1|946212|scaffold_702441.1
Length=436
Score = 60.2 bits (32), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 4528 ATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGATG 4565
||||||||||||||||||||||||||||| |||||||
Sbjct 285 ATTTTGTGAGAGGCCAACCTGAGCTTTTGAAGAAGATG 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 180887644469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5