BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79250.1
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316818 jgi|Araly1|316818|fgenesh1_pm.C_scaffold_2001851 2584 0.0
Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1 819 0.0
> Ahg316818 jgi|Araly1|316818|fgenesh1_pm.C_scaffold_2001851
Length=1677
Score = 2584 bits (1399), Expect = 0.0
Identities = 1586/1677 (95%), Gaps = 9/1677 (1%)
Strand=Plus/Plus
Query 33 ATGTTAACGAAGCCCGGAAAGAAGCTTGACTCTTCAGAG------TCAACTCATCATACT 86
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTTAACGAAGCCCGGAAAGAAGCTTGACTCTTCAGAGCCAAAATCAACTCATCATACA 60
Query 87 ACGAGTTCAAACTATCCACCATTAGATATTGTTCATCAAACTCCACAACCACGCAAAGAG 146
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACGAGTTCCAATTATCCACCGTTAGATATTGTTCATCAAACTCCACAACCACGTAAAGAG 120
Query 147 ATGCAACAAAAGCCATTGTTCGATCCCAAGAAGATGGATAATCTTATAAAACCGGAGCCA 206
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATGCAACAAAGGCCATTGTTCGATCCCAAGAAGATGGATAATCTTATAAAACCAGAGCCA 180
Query 207 GCTGGGTTCACCAATCACCACCGTCCAAACCCTAGTCCAAAAATCCCATCCTCACCTGGT 266
|||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GCTGGGTTCAGTAATCATCACCGTCCAATCCCTAGTCCAAAAATCCCATCCTCACCTGGT 240
Query 267 TCCAACATGACCGAGTCacaatcaaacttaaacaccaaaccaaacaacaacaacagtaac 326
|||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 241 TCCAGCATGGCCGAGTCACAATCAAACCTAAACACCAAACCAAGCAACAACAACAGTAAC 300
Query 327 aacaaTAGCAATATGAGCTCAAGAAGCAACAGCATTGAGAGCACGTCCTCTAATCCCTCT 386
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AACAATAGCAATATGAGTTCAAGAAGCAACAGCATTGAGAGCACTTCCTCTAATCCCTCT 360
Query 387 AAGCCACACACAGGTGGTGACATTAGGTGGGATGCTGTGAACACGTTGACCTCCAAAGGA 446
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 361 AAGCCACACACAGGTGGTGACATTAGGTGGGATGCTGTCAATATGTTGACCTCCAAAGGA 420
Query 447 GTCCAGCTCGGTATCAGCGATTTCCGGCTTCTTAAACGGCTCGGTTATGGAGACATTGGG 506
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCCAGCTCGGGATCAGCGATTTTCGGCTTCTTAAACGGCTCGGTTATGGAGACATTGGG 480
Query 507 AGTGTTTACCTAGTCGAGCTCAGAGGAACCATCACCTATTTCGCCATGAAAGTGATGGAC 566
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 AGTGTTTACCTAGTCGAGCTCAGAGGAACCAACACCTATTTCGCCATGAAAGTGATGGAC 540
Query 567 AAGGCTTCCTTAGCTAGCAGGAACAAGCTTTTGCGAGCTCAAACAGAGAGAGAGATCTTG 626
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AAAGCTTCCTTAGCTAGCAGGAACAAGCTGTTGCGAGCTCAAACAGAGAGAGAGATCTTG 600
Query 627 TCTCAGCTTGATCACCCGTTCTTGCCCACTCTATACTCACACTTTGAAACAGATAAGTTT 686
||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||
Sbjct 601 TCTCAGCTTGATCACCCCTTCCTGCCCACTCTATACTCGCATTTTGAAACAGATAAGTTC 660
Query 687 TATTGCTTGGTCATGGAGTTTTGTGGCGGTGGTAATCTCTATTCCTTGCGACAGAAGCAA 746
|||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 661 TATTGCTTAGTCATGGAGTTTTGTGGTGGTGGTAATCTCTATTCCTTGAGACAGAAGCAA 720
Query 747 CCAAACAAGTGTTTCACAGAAGACGCGGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCA 806
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CCAAACAAATGTTTCACAGAGGACGCCGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCA 780
Query 807 TTGGAGTACTTGCACATGCTAGGAATTGTATACCGTGACTTGAAGCCAGAAAATGTTCTA 866
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 781 TTGGAGTACTTGCACATGCTCGGAATTGTTTACCGTGACTTGAAGCCAGAAAATGTTCTA 840
Query 867 GTCAGAGATGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGCTCCGTC 926
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 841 GTCAGAGACGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTC 900
Query 927 AGTCCAACTCTCGTCAAATCATCCTCTGTTCATGCGGCCGGCGGCGGAAGCGGAAGTAGT 986
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 901 AGTCCAACCCTCGTCAAATCATCCTCTGTTCACGCCGCCGGCGGCGGAAGCGGAAGCAGT 960
Query 987 CGACCTGTAGGTCTCATCGACGAGGACGCGGCGGTGCAAGGTTGTATCCAACCGTCCACA 1046
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 CGGCCTGTAGGTCTAATCGACGAGGACGCGGCGGTGCAAGGTTGTATCCAACCGTCAACA 1020
Query 1047 TTCTTCCCACGCATCTTGCAGTCATCCAAGAAGAATCGAAAGGCGAAATCAGATTTCGGA 1106
|||||||| || || || ||||| || |||| ||||||||| |||||||| |||||||||
Sbjct 1021 TTCTTCCCGCGGATTTTACAGTCGTCGAAGAGGAATCGAAAAGCGAAATCGGATTTCGGA 1080
Query 1107 CTCTTCGTCAACGGATCCATGCCGGAACTCATGGCAGAGCCAACGAACGTTAAGTCAATG 1166
|||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct 1081 CTCTTCGTTAACGGATCCATGCCAGAACTCATGGCGGAGCCAACGAACGTCAAATCAATG 1140
Query 1167 TCATTCGTTGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGAGAAGGACATGGA 1226
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1141 TCATTCGTCGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGTGAAGGACACGGA 1200
Query 1227 AGCGCCGTAGATTGGTGGACATTCGGAATTTTCATTTACGAGCTTCTCTATGGAGCGACG 1286
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 AGCGCCGTAGATTGGTGGACCTTCGGAATTTTCATCTACGAGCTTCTCTATGGAGCGACG 1260
Query 1287 CCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATAGGACAAGCTTTAAGA 1346
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 CCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATCGGACAAGCTTTAAGA 1320
Query 1347 TTCCCTGAGGTTCCTCATGTGAGCTCGGCGGCGAGAGATCTCATCAAAGGATTATTAGTT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCCCTGAGGTTCCTCATGTGAGCTCGGCGGCGAGAGATCTCATCAAAGGATTATTAGTT 1380
Query 1407 AAAGAGCCGCAAAAACGAATCGCTTACAAACGTGGAGCGACGGAGATTAAGCAGCATCCG 1466
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1381 AAAGAACCACAAAAACGAATCGCTTACAAACGTGGCGCGACGGAGATCAAGCAGCATCCG 1440
Query 1467 TTTTTCGAAGGTGTGAATTGGGCGCTAATTCGGAGTGCAACGCCGCCGCATGTACCGGAA 1526
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1441 TTTTTCGAAGGTGTGAATTGGGCGCTGATTCGGAGTGCAACGCCGCCGCATGTACCAGAA 1500
Query 1527 CCGGTGGATTTTTCGTGTTACGCAAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGT 1586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CCGGTGGATTTTTCGTGTTACGCAAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGC 1560
Query 1587 GGCGGAAAGAAGAACAATAACGGTGCTGGAGGTGGTTGCAGTAC---CGGCGGTGGTGAT 1643
||||||||||||||||||| |||||| |||||||||||||| | |||||||||||||
Sbjct 1561 GGCGGAAAGAAGAACAATATCGGTGCCGGAGGTGGTTGCAGCAGTGTCGGCGGTGGTGAT 1620
Query 1644 AACAAACCTAACGGCGATTGCAATGATCCTGATTACATTGACTTTGAATACTTTTAG 1700
|||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1621 AACAAATCTAACGGCGATTGCCATGATCCTGATTACATTGACTTTGAATATTTTTAG 1677
> Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1
Length=1298
Score = 819 bits (443), Expect = 0.0
Identities = 1004/1264 (79%), Gaps = 82/1264 (6%)
Strand=Plus/Plus
Query 339 ATGAGCTCA-AGAAGCAACAGCATTGAGAGCACGTCCTC---TAATCCCTCTAAGCCACA 394
||||||||| | |||||||| || || ||||| ||||| |||| |||||||||| ||
Sbjct 1 ATGAGCTCACA-AAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCA 59
Query 395 CACAGGTGGTGACATTAGGTGGGATGCTGTGAACACGTTGACCTCCAAAGGAGTCCAGCT 454
|||||| || || ||||||||||| || ||||| | |||| || | |||| || ||||
Sbjct 60 CACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCT 119
Query 455 CGGTATCAGCGATTTCCG-GCTTCTT-AAACGGCTCGGTTATGGAGACATTGGGAGTGTT 512
|| ||||||||||| || | || || |||||||| || || ||||| || || ||||||
Sbjct 120 TGGAATCAGCGATTTTCGTG-TT-TTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTT 177
Query 513 TACCTAGTCGAGCTCAGA-G-G--AA-CC-ATC-ACCTATTTCGCCATGAAAGTGATGGA 565
|| || || || |||| | | | || || | | || |||||||| |||||||| |||||
Sbjct 178 TATCTTGTTGAACTCAAAGGCGCAAATCCGA-CTACATATTTCGCGATGAAAGTAATGGA 236
Query 566 CAAGGCTTC-CTTAGCT-AGCAGGAACAAGCTTTTGCGAGCTCAAACAGAGAGAGAGATC 623
|||||||| ||| | | |||||||||||||| ||| ||||||| || ||||||||||||
Sbjct 237 TAAGGCTTCTCTT-G-TGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATC 294
Query 624 TTGTCTCAGCTTGATCACCCGTTCTTGCCCACTCTATACTCACACTTTGAAACAGATAAG 683
||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct 295 TTGTCTCAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAA 354
Query 684 TTTTATTGCTTGGTCATGGAGTTTTGTGGCGGTGGTAATCTCTATTCCTTGCGACAGAAG 743
|| |||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||
Sbjct 355 TTCTATTGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAG 414
Query 744 CAACCAAACAAGTGTTTCACAGAAGACGCGGCAAGATTCTTTGCTTCTGAAGTGCTATTG 803
||||| ||||||||||||||||||||||| ||||| |||||||| || |||||| | ||
Sbjct 415 CAACCTAACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTA 474
Query 804 GCATTGGAGTACTTGCACATGCTAGGAATTGTATACCGTGACTTGAAGCCAGAAAATGTT 863
|| || ||||| || |||||||| ||||| |||||||| || || |||||||| || ||
Sbjct 475 GCGTTAGAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTA 534
Query 864 CTAG-TCAGAGATGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGCTC 922
|| | || |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 535 CTGGTTC-GAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTC 593
Query 923 CGTCAGTCCAACTCTCGTCAAATCATCCTCTGTTCATGCGGCCGGCGGCGGAAGCGGAAG 982
|||| |||||| || |||||||| | | | || |||| ||||| | ||| |
Sbjct 594 AGTCAATCCAACACTTGTCAAATC-T--T-T---CAA-CGGC-GGCGGAACCA-CGGGA- 642
Query 983 TAGTCGACCTGTAGGTCTCATCGACGAGGACGCGGCGGTGCAAGGTTGT-ATCCAACCGT 1041
| ||| || | | ||| | | |||||||| ||||| ||| | |||||| |
Sbjct 643 -A-TCGT--TG-A------A--GAC-A--ATGCGGCGGTCCAAGGATGTTA-CCAACCAT 685
Query 1042 CCACATTCTTCCCACGCAT-CTTGCAGTCATCCAAGAAGAATCG-AAAGGCGAAATCAGA 1099
|||||||||||||||| || || || ||||| ||||| || || ||| | ||||| ||
Sbjct 686 CCACATTCTTCCCACGAATGCTC-CAATCATCGAAGAAAAACCGTAAATCC-AAATCCGA 743
Query 1100 TTTCGGACTCTTCGTCAACGGATCCATGCCGGAACTCATGGCAGAGCCAACGAACGTTAA 1159
||||| | | | | | || | || ||||||||||||||||| |||||||| ||
Sbjct 744 TTTCG-A-TG---G--ATC--ATT-A--CCAGAACTCATGGCAGAGCCGACGAACGTGAA 791
Query 1160 GTCAATGTCATTCGTTGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGA-GAAG 1218
|||||||| || || |||||||||||||||||||| |||||||||||| | ||||
Sbjct 792 ATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAA-ACGAAG 850
Query 1219 GACATGGAAGCGCCGTAGATTGGTGGACATTCGGAATTTTCATTTACGAGCTTCT-CTAT 1277
| || ||||||||||||||||||||||| || || |||||||| ||||||||||| | ||
Sbjct 851 GTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAGCTTCTTC-AT 909
Query 1278 GGAGCGACGCCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATAGGACAA 1337
||||| ||||| |||||||||||||||||| || |||||| | || || || ||||||
Sbjct 910 GGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTAATCGGACAA 969
Query 1338 GCTTTAAGATTCCCTGAGG-TTCCTCATGTGAGCTCGGCGGCGAGAG-ATCTCATCAAAG 1395
|| | |||||||| || ||| ||| || ||||| ||| | || || | |||||||
Sbjct 970 CCTCTGAGATTCCCGGAATATTC-TCAGGTTAGCTCAAAGGCAA-AGGATTTAATCAAAG 1027
Query 1396 GATTATTAGTTAAAGAGCCGCAAAA-ACGAATCGCTTACAAACGTGGAGCGACGGAGATT 1454
| || || || |||||||||||||| | |||| || || || || || |||||||||||
Sbjct 1028 GTTTGTTGGTAAAAGAGCCGCAAAACA-GAATTGCGTATAAGCGAGGCGCGACGGAGATC 1086
Query 1455 AAGCAGCATCCGTTTTTCGAAGGTGTGAATTGGGCGCTAATTCG-GAGTGCAACGCCGCC 1513
||||| ||||| ||||| |||||||||||||||||| | ||||| | | | |||||||||
Sbjct 1087 AAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTG-GAGAAACGCCGCC 1145
Query 1514 GCATGTACCGGAACCGGTGGATTTTTCGTGTTACGC-AAGCAAGGATAAAGAGTCTATGG 1572
|||| | ||||| ||||||||||| |||||||| | ||| ||| | || |||||| ||
Sbjct 1146 GCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAG-AGAAGGAGTCTTTGC 1204
Query 1573 CGGC 1576
||||
Sbjct 1205 CGGC 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71457299620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5