BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79260.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316819 jgi|Araly1|316819|fgenesh1_pm.C_scaffold_2001852 689 0.0
> Ahg316819 jgi|Araly1|316819|fgenesh1_pm.C_scaffold_2001852
Length=504
Score = 689 bits (373), Expect = 0.0
Identities = 467/510 (92%), Gaps = 15/510 (3%)
Strand=Plus/Plus
Query 39 ATGAATCAGCTGC-AGCAACTCCAAAACCCA-GGGGAATCGCCGCCGGTGCACCCTTTTG 96
||||||||||||| || ||||| |||||||| || ||| ||||||||||| || |
Sbjct 1 ATGAATCAGCTGCAAG-AACTCGAAAACCCACGGCCAAT----TCCGGTGCACCCGTTCG 55
Query 97 TAGCGCCGTTGTCGTATCTATTAGGAACATGGAGAGGACAAGGAGAAGGTGAATATCCTA 156
|||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||| |
Sbjct 56 TAGCGCCGTTGTCGTATCTACTGGGAACTTGGAGAGGACAAGGAGAAGGTGGATATCCAA 115
Query 157 CTATACCGTCTTTCCGCTACGGCGAAGAGATCCGTTTCTCACATTCCGGCAAGCCGGTGA 216
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 116 CTATACCTTCTTTCCGATACGGCGAAGAGCTCCGTTTCTCACATTCCGGCAAGCCGGTGA 175
Query 217 TAGCGTATACGCAAAAGACATGGAAATTGGAATCAGGAGCTCCGATGCACGCCGAGAGTG 276
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTCGTATACGCAAAGGACATGGAAATTGGAATCAGGAGCTCCGATGCACGCCGAGAGTG 235
Query 277 GTTACTTTCGTCCAAGA-CCAGATGGTTCTATTGAAGTCGTCATTGCTCAGAGCACAGGT 335
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 GTTACTTTCGTCCAA-ATCCAGATGGTTCCATTGAAGTCGTCATTGCTCAGAGCACAGGT 294
Query 336 CTCGTCGAAGTCCAGAAAGGAACATACAATGTAGATGAACAATCAATCAAACTCAAAAGT 395
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 295 CTCGTCGAAGTCCAGAAAGGAACATACAATGTTGATGAACAATCCATCAAACTCAAAAGT 354
Query 396 GATCTTGTGGGAAACGCTTCAAAGGTGAAGGAGATAAGTAGAGAATTTGAATTGGTTGAT 455
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 GATCTCGTGGGAAACGCATCAAAGGTGAAGGAGATAAGTAGAGAATTTGAATTGGTTAAT 414
Query 456 GGAAAACTATCGTATGTGGTTCGTATGAGTACAACCACTA-A--CCCTCTTC---AACCA 509
|||||||||||||| ||||||| ||||||||||||||| | | |||||||| |||||
Sbjct 415 GGAAAACTATCGTACGTGGTTCATATGAGTACAACCACCACAAACCCTCTTCTTCAACCA 474
Query 510 CATCTCAAAGCAATACTCGATAAGCTTTGA 539
||||||||||| || |||||||||||||||
Sbjct 475 CATCTCAAAGCTATTCTCGATAAGCTTTGA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5