BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79270.1
Length=2531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477094 jgi|Araly1|477094|fgenesh2_kg.2__2224__AT1G79270.1 3661 0.0
> Ahg477094 jgi|Araly1|477094|fgenesh2_kg.2__2224__AT1G79270.1
Length=2477
Score = 3661 bits (1982), Expect = 0.0
Identities = 2357/2525 (93%), Gaps = 77/2525 (3%)
Strand=Plus/Plus
Query 36 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCTTTTTTAAAATCACTTTT 95
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCTTTTTT-TAATAACTTTT 59
Query 96 TGAAGAAGCACTTACAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 155
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGAAGAAGCACTTTGAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 119
Query 156 GAAAAGATGTTTTAAG-TTTTTGCCTTGTCGTCTAATCCAACGGTCGATCTTCGTTCATA 214
|||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TAAAAGATGTTTT-AGTTTTTTGCCTTGTCGTCTAATCCAACGGTCAATCTTCGTTCATA 178
Query 215 TCAAGAATCCTTATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCCCAACCTC 274
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCAAGAATCC--ATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCTCAACCTC 236
Query 275 TATTTT--TTAATTTACATCGAAAATAAATAAGAAGGATTGCaaaagaaaaaatag-aaa 331
| |||| || |||| |||| |||||||||||||||||||||||||||||||| | |||
Sbjct 237 TTTTTTAATTTATTTGCATCTAAAATAAATAAGAAGGATTGCAAAAGAAAAAA-GGAAAA 295
Query 332 aaaaaCTCTCTGttcttctttcttcttcttcttcgtcgtaagcca-ttaccatttc-t-t 388
||||| |||||||||||||||||||||||| | |||||||||| |||||||||| | |
Sbjct 296 AAAAAAACTCTGTTCTTCTTTCTTCTTCTTC-T--TCGTAAGCCATTTACCATTTCTTCT 352
Query 389 ctc-c-c-tctctctgtttttctttGTTGCGTATCTGTACTTAGTTTTCAAACATAAAAA 445
||| | | |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 353 CTCTCTCGTCTCTCTGTTTTTCTTTGTTACGTATCTGTACTTTGTTTTCAAACATAAAAA 412
Query 446 TAAAACATATCTTTAGCTGATGTTGTCTTCTTCTTGATAAACAGATTTTCTACAGCtttt 505
||||| |||||||| | ||||| | | ||||||||| | ||||||||||||||| ||
Sbjct 413 TAAAAGATATCTTTTGTTGATG-T-T-TTCTTCTTG----A-AGATTTTCTACAGCTATT 464
Query 506 tttC-TTT-CTAATTTAATAATTCTTGAGACTTTTTAAAACCCTCTGCGAAACAGATGAT 563
|||| ||| |||||| |||||||||||||| ||| |||||||||||| |||||||| ||
Sbjct 465 TTTCTTTTCCTAATTAAATAATTCTTGAGA-ATTTCAAAACCCTCTGCAAAACAGATAAT 523
Query 564 TCGAGTTTTGGTTTCTTCATCTGTGTTTTGATTTTTTCGTCTTTTAT-TCTTAGTCAAAC 622
||||||||||||||||||||||||||||||||||||||||||||| | || | | |||
Sbjct 524 TCGAGTTTTGGTTTCTTCATCTGTGTTTTGATTTTTTCGTCTTTT-TGTC-T--T--AAC 577
Query 623 ACATAAATTTCTTTTACTAC-TCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 681
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 578 ACATAAATTTCTTTTACTACTTCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 637
Query 682 AAATCCTTTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 741
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 AAATCCATTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 697
Query 742 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGTCAGAGGCAGAGCCATCA 801
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 698 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGT------CAGAGCCATCA 751
Query 802 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGTGGCTACTATGGA 861
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 752 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGAGGCTACTATGGA 811
Query 862 TACTACTATCCAGGTCTTGATGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 921
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 812 TTCTACTATCCAGGTCTTGACGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 871
Query 922 TATGGAACAGAAGTTCAGTACCCGGTAATGCAAGGGGAAAATGGGTCTGTGATCTACTTG 981
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 872 TATGGAACAGAAGTTCAGTACCCGGTTATGCAAGGGGAAAATGGATCTTTGATCTACTTG 931
Query 982 ATGCCAGGGTTTCAGTCTTATGATGCAAGCCAAACTTATATGCCTATAAACCCGGTTGGT 1041
|||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||
Sbjct 932 ATGCCAGGGTTTCAATCTTATGATGCTAGTCAAACTTATATGCCTATAAGCCCGGTTGGT 991
Query 1042 GTATCGAGTCAAGCACTTCATTCGCCGATGTATGCTGCTCAGGGTTATTATCAGAACCAA 1101
|| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 992 GTTTCTAGTCAAGCACTTCATTCGCCAATGTATGCAGCTCAGGGTTATTACCAGAACCAA 1051
Query 1102 TTTGGTTATGCAGATGTTTCATCGCCCACATATTTATGGGACCCTGTTGGAGACAGGTAT 1161
|||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1052 TTTGGTTATGGAGACGTTGCATCGCCGACCTATTTATGGGACCCTGTTGGAGACAAGTAT 1111
Query 1162 GTGTATGGTGTTGCTTCATATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1221
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GTGTATGGTGTTGCTTCAAATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1171
Query 1222 AACCACAACAATTATTATTCAAAGAGCAAGAACTCCTTCACGGGTCACGGCATGGGAGAT 1281
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1172 AATCACAACAATTATTACTCAAAGAGCAAGAACTCCTTCACGGGCCACGGCATGGGAGAT 1231
Query 1282 CGTCCTAAAACACCGCGAAAAGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAAC 1341
||||||||||||||||| | | | | |||||||||||||||| |||||||| ||||
Sbjct 1232 CGTCCTAAAACACCGCG---A--A--A-A-AACAGCTATGCCCCACTCCCACTGCATAAC 1282
Query 1342 CAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTA 1401
||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1283 CAAGAAAGAGGAAGAATTGCTTACCCGATGGACCCGGTAAAGAAAAAGTCTGGAGCTTTG 1342
Query 1402 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGG-ACAAAAGAAAATGGTACA-AGTATGA 1459
||||||||||||||||||||||||||||||||| || ||||||||||||| | || | |
Sbjct 1343 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGGAAC-AAAGAAAATGGTA-ATAGCGTAA 1400
Query 1460 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCATGTTCGTTGG 1519
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1401 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCCTGCTCGTTGG 1460
Query 1520 ATGCTGAAGGGAATGAAAGAAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1579
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 ATGCTGAAGGGAATGAAAGGAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1520
Query 1580 ACCTC-CCTAGCTTTCAGACCAAATACGAGGAAGCAATCTTTTTTGTGATAAAATCGTAT 1638
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1521 ACCTCACC-AGCTTTCAGACCAAATACGACGAAGCAATCTTTTTTGTGATAAAATCGTAT 1579
Query 1639 AGCGAAGACGACATACACAAGAGCATCAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1698
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1580 AGCGAAGATGACATACACAAGAGCATTAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1639
Query 1699 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGAAGGCT-GCAGACAAAAGTGG 1757
|||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||
Sbjct 1640 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGA-GGATTGCAGAGAAAAGTGG 1698
Query 1758 AAAGTGCCCGGTTTTCCTGTTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1817
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 AAAGTGCCCAGTTTTCCTATTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1758
Query 1818 TGAGATGATTGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1877
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TGAGATGATGGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1818
Query 1878 GACTGGCTATTTTCCGGTGAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACG 1937
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1819 GACTGGCTATTTTCCGGTCAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAATTACG 1878
Query 1938 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGA 1997
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1879 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTTACCAATAGCAGAGACACACAAGA 1938
Query 1998 GGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGAC 2057
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1939 GGTGAGGTTGCCACAAGGGAATGAAGTGTTGAACATCTTCAAGAACTATGCAGCAAAGAC 1998
Query 2058 ATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ATCTATATTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2058
Query 2118 GCTAAGGTTCCCTCCGGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGATTTTAAAAC 2177
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2059 GCTAAGGTTCCCTCCTGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGGTTTCAAAAC 2118
Query 2178 AATGGAGATGTCTAATACAGTCGAAGAGGGAAACACAGAGTTAACCGGG-ACAGTGAGCT 2236
||||||||| |||||||||||||| | || ||||||||||||| ||||| ||||||| ||
Sbjct 2119 AATGGAGATATCTAATACAGTCGA-G-GG-AAACACAGAGTTA-CCGGGGACAGTGAACT 2174
Query 2237 AACTAGAAGAACATGTAGTGtttttggtttggtttttt----AAGGATCAATATAAACCG 2292
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2175 AACTAGAAGAACATGTAGTGTTTTGGGTTTGGTTTTTTTGTTAAGGATCAATATAAACCG 2234
Query 2293 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGATGGCTTCTTCTTCTATTGT 2352
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 2235 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGTTGGCTTCTTGTTTTATTGT 2294
Query 2353 TTCGTTGTATGGTGTAATGTTGGGTTTTTTCTTCAC-tttttttttttGGTTTTGTG--T 2409
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct 2295 TTCGTTGTATGGTGTAATGTTGGGTTTTT-CTTCACCTTTTTTTTTTTGGTTTTGTGAAT 2353
Query 2410 T-GTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGG-TTTGATTT 2467
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2354 TTGTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGGGTTTGATTT 2413
Query 2468 TATAGTGATATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACATA-AAATGAGT 2526
|||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2414 TATAGTGAAATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACA-AGAAATGAGT 2472
Query 2527 TTCTC 2531
|||||
Sbjct 2473 TTCTC 2477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95416063725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5