BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79280.2

Length=6589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916244 jgi|Araly1|916244|Al_scaffold_0008_995                     350    1e-94
  Ahg949173 jgi|Araly1|949173|scaffold_801060.1                       89.8    2e-16


> Ahg916244 jgi|Araly1|916244|Al_scaffold_0008_995
Length=1512

 Score =  350 bits (189),  Expect = 1e-94
 Identities = 224/241 (93%), Gaps = 2/241 (1%)
 Strand=Plus/Plus

Query  2324  GGAGTGAAGTAATTGCAATAAGGTCTGAACGGGATAAGTTGGCGATGGAGGCAAATTTTG  2383
             |||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct  134   GGAGTGAAATAATTGCAATAAGGTCTGAGCGGGATAAGTTGGCGATGGGGGCATATTTTG  193

Query  2384  CTAGGGAAAAATTAGAGGGCATCATGAAAGAATCTGAACGCAAGAGAGAAGAAATGAATA  2443
             ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||  
Sbjct  194   CTACGGAAAAACTAGAGGGCGTCATGAAAGAATCTGAATGCAAGAGAGAAGAAATGAACG  253

Query  2444  GCGTTTTGGCAAGAAACATAGAGTTC-TCACAGCTAATCATTGACCACCAGAGGAAATTG  2502
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| 
Sbjct  254   GCGTTTTGGCAAGAAACATAGAG-TCTTCACAGCTAATCATTGACCACCAGAGGAAATTA  312

Query  2503  CGCGAGAGCTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG  2562
              | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313   AGTGAGAATTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG  372

Query  2563  G  2563
             |
Sbjct  373   G  373


 Score =  303 bits (164),  Expect = 8e-81
 Identities = 188/199 (94%), Gaps = 4/199 (2%)
 Strand=Plus/Plus

Query  2660  AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAACAAGAGCTGCCG  2719
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  371   AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAGCAAGAGCTGCCG  430

Query  2720  AGAGAAGGAAACAAGAGGAGCATATTAAGCAACTTCAGAGAGAATGGGCTGAAGCCAAAA  2779
             ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||
Sbjct  431   AGAGAAGGAAACAAGAGGAGCATATCAAGCAACTTGAGAGAGAA-GGGCTGAAGCTAAAA  489

Query  2780  AAGAATTGCAAGAAGAAAGGAGCAATGCACGGGATT-TTACTTCGGACCGGAATCAAACT  2838
             | |||||||||||||||||||||||||||||| | | |||||| |||||| |||||||||
Sbjct  490   A-GAATTGCAAGAAGAAAGGAGCAATGCACGG-ACTATTACTTTGGACCGCAATCAAACT  547

Query  2839  TTGAACAATGCTGTAATGC  2857
             |||||||||||||||||||
Sbjct  548   TTGAACAATGCTGTAATGC  566


 Score =  183 bits (99),  Expect = 1e-44
 Identities = 106/109 (97%), Gaps = 2/109 (2%)
 Strand=Plus/Plus

Query  1216  AAGGAGAACGGAGACCTT-AAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC  1274
             |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1281  AAGGAGAACGAAGACCTTAAAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC  1340

Query  1275  TAGGAAAACAGATGAGCTAAATCT-GATACCTTTCAGCAATTTCACAAG  1322
             |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1341  TAGGAAAACAGATGAGCTAAATCTTGATACCTTTCAGCAATTTCACAAG  1389


 Score =  167 bits (90),  Expect = 1e-39
 Identities = 99/103 (96%), Gaps = 2/103 (2%)
 Strand=Plus/Plus

Query  1444  CTGGCCAAAATTTATGAGAAGTATCAGGAGGCTGTTGATGCCATGAGGCATGAGCAATTA  1503
             |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  1390  CTGGCCAAAATTTATGAGAAGTATCATGAGGCTGTTGATGCCTTGAGGCATGAGCAATTA  1449

Query  1504  GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGT-GTTATCC  1545
             ||||||||||||||||||||||||||||||||||| || ||||
Sbjct  1450  GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGTTGT-ATCC  1491


 Score =  106 bits (57),  Expect = 2e-21
 Identities = 71/78 (91%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  2247  AGAGGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAACGCATCCGGATTCTCGAAGA  2306
             ||| |||||||||||||||||||||||||||||||||||| ||||   || |||||||||
Sbjct  12    AGACGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAATGCATTTTGAGTCTCGAAGA  71

Query  2307  AGATTTTGCGAAGGCTAG  2324
             ||||||||| ||||||||
Sbjct  72    AGATTTTGCAAAGGCTAG  89


 Score =  102 bits (55),  Expect = 3e-20
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  3126  GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGTAAAAGCCACATGCTCCAG  3183
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  747   GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGCAAAAGCCACATGCTCCAG  804


> Ahg949173 jgi|Araly1|949173|scaffold_801060.1
Length=586

 Score = 89.8 bits (48),  Expect = 2e-16
 Identities = 50/51 (98%), Gaps = 0/51 (0%)
 Strand=Plus/Minus

Query  1536  GGTGTTATCCGAATTAGAAGAGAAAGCCGGATTTATCCAAGAAGAAAGAGG  1586
             ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  542   GGTGTTATCCGAATTAGAAGAGAAAGCCGAATTTATCCAAGAAGAAAGAGG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 249733794026


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5