BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79280.2 Length=6589 Score E Sequences producing significant alignments: (Bits) Value Ahg916244 jgi|Araly1|916244|Al_scaffold_0008_995 350 1e-94 Ahg949173 jgi|Araly1|949173|scaffold_801060.1 89.8 2e-16 > Ahg916244 jgi|Araly1|916244|Al_scaffold_0008_995 Length=1512 Score = 350 bits (189), Expect = 1e-94 Identities = 224/241 (93%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 2324 GGAGTGAAGTAATTGCAATAAGGTCTGAACGGGATAAGTTGGCGATGGAGGCAAATTTTG 2383 |||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |||||| Sbjct 134 GGAGTGAAATAATTGCAATAAGGTCTGAGCGGGATAAGTTGGCGATGGGGGCATATTTTG 193 Query 2384 CTAGGGAAAAATTAGAGGGCATCATGAAAGAATCTGAACGCAAGAGAGAAGAAATGAATA 2443 ||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 194 CTACGGAAAAACTAGAGGGCGTCATGAAAGAATCTGAATGCAAGAGAGAAGAAATGAACG 253 Query 2444 GCGTTTTGGCAAGAAACATAGAGTTC-TCACAGCTAATCATTGACCACCAGAGGAAATTG 2502 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 254 GCGTTTTGGCAAGAAACATAGAG-TCTTCACAGCTAATCATTGACCACCAGAGGAAATTA 312 Query 2503 CGCGAGAGCTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG 2562 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 AGTGAGAATTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG 372 Query 2563 G 2563 | Sbjct 373 G 373 Score = 303 bits (164), Expect = 8e-81 Identities = 188/199 (94%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 2660 AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAACAAGAGCTGCCG 2719 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 371 AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAGCAAGAGCTGCCG 430 Query 2720 AGAGAAGGAAACAAGAGGAGCATATTAAGCAACTTCAGAGAGAATGGGCTGAAGCCAAAA 2779 ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||| Sbjct 431 AGAGAAGGAAACAAGAGGAGCATATCAAGCAACTTGAGAGAGAA-GGGCTGAAGCTAAAA 489 Query 2780 AAGAATTGCAAGAAGAAAGGAGCAATGCACGGGATT-TTACTTCGGACCGGAATCAAACT 2838 | |||||||||||||||||||||||||||||| | | |||||| |||||| ||||||||| Sbjct 490 A-GAATTGCAAGAAGAAAGGAGCAATGCACGG-ACTATTACTTTGGACCGCAATCAAACT 547 Query 2839 TTGAACAATGCTGTAATGC 2857 ||||||||||||||||||| Sbjct 548 TTGAACAATGCTGTAATGC 566 Score = 183 bits (99), Expect = 1e-44 Identities = 106/109 (97%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1216 AAGGAGAACGGAGACCTT-AAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC 1274 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1281 AAGGAGAACGAAGACCTTAAAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC 1340 Query 1275 TAGGAAAACAGATGAGCTAAATCT-GATACCTTTCAGCAATTTCACAAG 1322 |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1341 TAGGAAAACAGATGAGCTAAATCTTGATACCTTTCAGCAATTTCACAAG 1389 Score = 167 bits (90), Expect = 1e-39 Identities = 99/103 (96%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1444 CTGGCCAAAATTTATGAGAAGTATCAGGAGGCTGTTGATGCCATGAGGCATGAGCAATTA 1503 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1390 CTGGCCAAAATTTATGAGAAGTATCATGAGGCTGTTGATGCCTTGAGGCATGAGCAATTA 1449 Query 1504 GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGT-GTTATCC 1545 ||||||||||||||||||||||||||||||||||| || |||| Sbjct 1450 GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGTTGT-ATCC 1491 Score = 106 bits (57), Expect = 2e-21 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 2247 AGAGGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAACGCATCCGGATTCTCGAAGA 2306 ||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct 12 AGACGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAATGCATTTTGAGTCTCGAAGA 71 Query 2307 AGATTTTGCGAAGGCTAG 2324 ||||||||| |||||||| Sbjct 72 AGATTTTGCAAAGGCTAG 89 Score = 102 bits (55), Expect = 3e-20 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 3126 GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGTAAAAGCCACATGCTCCAG 3183 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 747 GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGCAAAAGCCACATGCTCCAG 804 > Ahg949173 jgi|Araly1|949173|scaffold_801060.1 Length=586 Score = 89.8 bits (48), Expect = 2e-16 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 1536 GGTGTTATCCGAATTAGAAGAGAAAGCCGGATTTATCCAAGAAGAAAGAGG 1586 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 542 GGTGTTATCCGAATTAGAAGAGAAAGCCGAATTTATCCAAGAAGAAAGAGG 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 249733794026 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5