BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79310.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909562 jgi|Araly1|909562|Al_scaffold_0002_2643 1779 0.0
> Ahg909562 jgi|Araly1|909562|Al_scaffold_0002_2643
Length=1200
Score = 1779 bits (963), Expect = 0.0
Identities = 1132/1213 (93%), Gaps = 14/1213 (1%)
Strand=Plus/Plus
Query 66 ATGGCAAAGAGAGCGTTGTTGATAGGAATCAACTATCCAGGAACCACGGAGGAGCTACAA 125
||||| |||||||||||| |||||||||||||||| ||||| ||||||| |||||||||
Sbjct 1 ATGGCGAAGAGAGCGTTGCTGATAGGAATCAACTACCCAGGCTCCACGGATGAGCTACAA 60
Query 126 GGCTGCGTCAATGACGTCCATAGAATGCATAAGTGTCTCGTTGACCGGTTCGGATTCGCG 185
|| |||||||| ||||||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 61 GGTTGCGTCAACGACGTCCGTCGGATGCATAAGTGCCTCGTTGACCGGTTCGGATTCGCC 120
Query 186 GAGGAAGATATCACTGTGCTGATTGACACCGACGAATCTTACACTCAACCCACAGGAAAG 245
||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 121 GAGAAAGATATCACGGTGCTGATTGACACCGACAAATCTTACACTCAACCCACCGGAAAG 180
Query 246 AACATCCGTCAGGCTTTGTCGGAGCTCATAAAGCCAGCAAAATCCGGTGACGTTTTATTC 305
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AACATCCGTCAGGCTTTGTCGGAGCTCATAAAGCCAGCAAAGTCCGGTGACGTTTTATTC 240
Query 306 GTGCATTACAGCGGACACGGCACGAGAGTCCCACCGGAAACAGGGGAAGAGGATGATACA 365
||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||
Sbjct 241 GTGCATTACAGTGGACACGGTACGAGGGTCCCGCCGGAAACAGAGGAAGAGGATGATACA 300
Query 366 GGTTTTGATGAGTGTATTGTTCCTTCCGACTTGAATCCAATTCCTGATGATGATTTCAGG 425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GGTTTTGATGAGTGTATTGTTCCTTCCGACTTGAATCCAATCCCTGATGATGATTTCAGG 360
Query 426 GATTTAGTGGAACAAGTTCCAGAGGGATGTCAGATAACTATCGTATCAGACTCTTGTCAC 485
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GATTTGGTGGAACAAGTTCCAGAGGGATGTCAGATAACGATCGTATCAGACTCTTGTCAC 420
Query 486 AGCGGCGGGCTCATTGATGAAGCTAAGGAACAGATCGGAGAGAGTACCACGACGAAGCCA 545
|||||||| ||||| |||||||||||||||||||||||||||||| | ||
Sbjct 421 AGCGGCGGACTCATCGATGAAGCTAAGGAACAGATCGGAGAGAGT----------A-CC- 468
Query 546 AATCGAGAATCCAAAGTTTCTTCTTTTGAATTCGAGTTTAAAAACTGTTTGCATAGCATT 605
||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 469 AATCGAGAAACCAAAGTTTCTTCTTTTGAATTCGAGATTGGGAACTGTTTGCATAGCGTT 528
Query 606 TTTGTGAAACTGCTTGCTTTTTGTGGAATCGGAAGTTCTCATGTAGAGACGCGCGAGATC 665
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 TTTGTGAAACTGCTTGCATTTTGTGGAATCGGAAGTTCTCATGTAGAAACGCGCGAGATC 588
Query 666 GTAGAAGTAGGCGAGGGAGATGAAGTTGTCAGATCAAGGTATCTGCCGTTGGAGAGGTTT 725
||||||||||| ||| ||||||||||||||| | |||||| ||| ||||||||||||||
Sbjct 589 GTAGAAGTAGGGGAGAGAGATGAAGTTGTCAAAGCAAGGTTTCTTCCGTTGGAGAGGTTC 648
Query 726 ATTGA-ACTTCTCAAACAACAAACTGGGCAAGACAATATCGAGATTGGGAAAATCAGACC 784
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 A-TCACACTTCTCAAACAACAAACTGGGCAAGACAATATCGAGATTGGGAAAATCAGACC 707
Query 785 CACCCTTTTTGATGTCTTTGGTGAAGATTCGAGCCCGAAGATAAAGAAGTTCATGAAAGT 844
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 708 GACCCTTTTCGATGTCTTTGGCGAAGATTCGAGCCCGAAGATAAAGAAGTTCATGAAAGT 767
Query 845 GATTCTTACCAAGCTAAGGAAAACAAATGACCAAAGTACGCTACTTGGTAAGATCGAAGA 904
|||||| |||||||||||||||| |||||| ||||||||| |||||||||||| ||||||
Sbjct 768 GATTCTCACCAAGCTAAGGAAAAGAAATGATCAAAGTACGTTACTTGGTAAGACCGAAGA 827
Query 905 AAGTGCTCGAGGGTATATAGAAGAGACGCTGAACGATGAACACTACATGAAACCCGCAAT 964
|||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 828 AAGTGCTCGAGGGTATATAGAAGAGAAGATAAACGATGAACACTACATAAAACCCGCAAT 887
Query 965 GCAGGCACAAGTGAAGAGCGATCGTGAGATTTATGGAGGAAGATCAAGCAACGGATTGTT 1024
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 GCAGGCACAAGTGAAGAGCGATCGTGAGATTTATGGAGGAGGATCAAGCAACGGATTGTT 947
Query 1025 TCCTGACCGAGGGATTCTGTTGAGTGGATGTCAAACAGATGAGACATCAGCAGATGTTAA 1084
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 948 TCCCGACCGAGGGATTCTGTTGAGTGGATGTCAAACAGATGAGACATCGGCAGATGTTAA 1007
Query 1085 GAAGAAAGGAGAAGCGTTTGGAGCGTTTAGTAATGCCATCCAAATGGTTTTGTCAGAGAC 1144
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1008 GAAGAGTGGAGAAGCGTTTGGAGCGTTTAGTAACGCTATCCAAATGGTTTTGTCAGAGAC 1067
Query 1145 TGATCATAAAGATAAGATTACAAACAAGGAAATGGTATTGAGGGCAAGAGAGATTCTGAA 1204
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1068 TGATCATAAAGATAAGATTACAAACAAAGAAATGGTATTGAGGGCAAGAGAGATTCTGAA 1127
Query 1205 GAAACAGATGTTTATTCAGAGACCAGGATTGTATTGCAATGACCGCTTTGTGAATGCTCC 1264
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1128 GAAACAGAGGTTTATTCAGAGACCAGGATTGTATTGTAATGACCGCTTTGTGAATGCTCC 1187
Query 1265 GTTTATATGCTAA 1277
||||||||||||
Sbjct 1188 ATTTATATGCTAA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5