BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79320.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909563 jgi|Araly1|909563|Al_scaffold_0002_2644 1186 0.0
> Ahg909563 jgi|Araly1|909563|Al_scaffold_0002_2644
Length=1074
Score = 1186 bits (642), Expect = 0.0
Identities = 693/718 (97%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGAAAGCTTTACTGATTGGGATCAACTACGTGGGAACCAAGGCAGAGCTACGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCAAGAAAGCTTTACTGATTGGGATCAACTACGTGGGAACCAAGGCAGAGCTACGA 60
Query 61 GGCTGCGTCAACGATGTCCGTCGGATGCGGATAAGCCTCGTCGAACGGTACGGATTCTCC 120
||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct 61 GGCTGCGTCAACGATGTCCGTCGGATGCGTATAACCCTCGTTGAACGGTACGGATTCTCC 120
Query 121 GAGGA-GAACATCAAAATGTTGATTGATACTGATAGTTCTTCGATCAAACCGACCGGTAA 179
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GAG-ACGAACATCAAAATGTTGATTGATACTGATAGTACTTCGATCAAACCGACCGGTAA 179
Query 180 GAACATCAGACAGGCGTTGTTAGATCTCGTTGAACCGGCTAAATCGGGTGATGTTCTCTT 239
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 180 GAACATCAGACAGGCGTTGTTGGATCTCGTTGAACCGGCTAAACCGGGTGACGTTCTCTT 239
Query 240 CGTCCATTACAGTGGACATGGGACTAGGTTACCCGCGGAAACTGGAGAAGATGATGATAC 299
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 240 CGTCCATTACAGTGGACACGGGACTAGGTTACCCGCTGAAACTGGAGAAGACGATGATAC 299
Query 300 TGGTTACGATGAGTGTATTGTTCCTTCCGATATGAATCTCATCACCGATGATGATTTCAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTACGATGAGTGTATTGTTCCTTCCGATATGAATCTCATCACCGATGATGATTTCAG 359
Query 360 GGATCTTGTGGATATGGTGCCAAAGGATTGTCCCATCACAATCATATCTGACTCTTGTCA 419
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 360 GGATCTTGTAGATATGGTGCCAAAGGATTGTCCCATTACAATCATCTCTGACTCTTGTCA 419
Query 420 CAGTGGCGGTCTCATAGATGAAGCCAAAGAGCAGATAGGAGAGAGCACGAAGAAGAAGAA 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGTGGTGGTCTCATAGATGAAGCCAAAGAGCAGATAGGAGAGAGCACGAAGAAGAAGAA 479
Query 480 AGACTCTGGAGACTCTTCAACGATCAACAAGGAGACAGAAGCAGAGATAATTGAAGTGGG 539
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACTATGGAGACTCTTCAGCGATCAACAAGGAGACAGAAGCAGAGATAATTGAAGTGGG 539
Query 540 AAACAGATCTCTGCCATTGGAGACTTTGATTGATATGCTGAAGCAAGAAACAGGCAACGA 599
||| || |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 540 AAAAAGGTCTCTGCCATTGGATACTTTGATTGATATGCTGAAGCAAGAGACGGGCAACGA 599
Query 600 TGATATCGAAGTGGGGAAAATCAGGACAACCCTTTTCGATATGTTTGGAGATGATTCAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TGATATCGAAGTGGGGAAAATCAGGACAACCCTTTTCGATATGTTTGGAGAAGATTCAAG 659
Query 660 TCCAAAGGTGAAGAAGTTTATGAATGTGATTCTAAGCAACCTACAAGAGACTACTACT 717
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCAAAGGTGAAGAAGTTCATGAATGTGATTCTAAGCAACCTACAAGAGACTACTACT 717
Score = 575 bits (311), Expect = 2e-163
Identities = 333/344 (97%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 764 TAGCTCAAGAGTTTCTGGAGCAGAAGCTTAGCGACGATGTGAAACCCGCGATCCAAGATG 823
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 731 TAGCTCAAGAGTTTCTTGAGCAGAAGCTTAACGACGATGTGAAACCCACGATCCAAGAGG 790
Query 824 TGTATGCAGGTGCTATAAATGGTGCACTTCCTGATAATGGTATACTGATCAGTGGTTGCC 883
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 791 TGTATGCAGGTGCTATCAATGGTGCACTTCCTGATAACGGTATACTGATCAGTGGTTGCC 850
Query 884 AAACTGATCAAACTTCTTCAGACGCAAGCCCACCGGGTCACCCGGAATTGGCTTATGGAG 943
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AAACTGATCAAACTTCTGCAGACGCAAGCCCACCGGGTCACCCGGAATTGGCTTATGGAG 910
Query 944 CACTAACCAATGCTATACAGATTATAATTGGGGAGACTAAAGGTAAGATTAGTAACAAAG 1003
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 911 CACTAACCAATGCTATACAGATTATAATTGGGGAAACTAAAGGTAAGATTAGTAACAAAG 970
Query 1004 ATCTTGTTTTGAAGGCTAGGAAGCTTCTTAGGAAACAGGGCTTTGATCAACGACCGGGAC 1063
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 971 ATCTTGTTTTGAAGGCTAGGAAGCTTCTTAAGAAACAGGGCTTTGATCAACGACCGGGAC 1030
Query 1064 TGTATTGCAATGATGCTTATGTCAATGCTCGGTTTATATGTTGA 1107
|||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1031 TGTATTGCAATGATACTTATGTCAATGCTCAGTTTATATGTTGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5