BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79330.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340086 jgi|Araly1|340086|fgenesh1_pg.C_scaffold_2002185 1792 0.0
Ahg471839 jgi|Araly1|471839|fgenesh2_kg.1__1793__AT1G16420.1 108 1e-22
> Ahg340086 jgi|Araly1|340086|fgenesh1_pg.C_scaffold_2002185
Length=1140
Score = 1792 bits (970), Expect = 0.0
Identities = 1084/1140 (95%), Gaps = 4/1140 (0%)
Strand=Plus/Plus
Query 70 ATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGAACCAAGGCGGAGCTACGG 129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGGACCAAGGCGGAGCTACGG 60
Query 130 GGATGCGTCAACGATGTCCGGAGAGTGCACAAATCTCTCGTGGATCGGTTTGGATTCTCC 189
|| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 61 GGCTGCGTCAACGATGTCCGGAGGGTGCACAAATGTCTCGTCGATCGGTTTGGATTCTCC 120
Query 190 GAGAGAAACATCACTGAGCTGATTGATACTGACGAGTCTTCCACCAAACCTACAGGGAAG 249
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 GAGAGAAACATCACTGAGCTGATTGACACTGACGACTCTTCCACCAAACCTACAGGGAAG 180
Query 250 AATATTCGAAGGGCATTGTTGAATCTAGTTGAATCCGCTAAA-CCGGGTGATGTTCTTGT 308
|||||||||||||| ||||||||||||||||| || |||||| || || |||||||||||
Sbjct 181 AATATTCGAAGGGCGTTGTTGAATCTAGTTGAGTCTGCTAAATCC-GGCGATGTTCTTGT 239
Query 309 CGTCCATTACAGTGGACACGGGACGAGGTTGCCGGCGGAGACTGGAGAAGACGATGATAC 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTCCATTACAGTGGACACGGGACGAGGTTGCCGGCGGAGACTGGAGAAGACGATGATAC 299
Query 369 TGGTTATGATGAGTGTATTGTTCCTTGTGATATGAATCTTATCACCGATGATGAGTTTAG 428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TGGATATGATGAGTGTATTGTTCCTTGTGATATGAATCTTATCACCGATGATGAGTTCAG 359
Query 429 AGATCTTGTGGAGAAAGTACCAAAGGAAGCACACATTACAATCATCTCAGACTCTTGTCA 488
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGATCTTGTGGACAAGGTACCAAAGGAAGCACACATTACAATCATCTCAGACTCTTGTCA 419
Query 489 CAGTGGTGGTCTCATCGATGAAGCTAAAGAGCAGATCGGAGAGAGCACGAAGAAGAAGCC 548
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 420 CAGTGGTGGTCTCATCGATGAAGCTAAAGAACAGATAGGAGAGAGCACGAAGAAGAAGCC 479
Query 549 AAAGAAAGAATCTGGAGGCTCTTCAGGACTTGGAATCAAAGGCTTTGTGCGTGAAGCTGT 608
||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 AAAGAAAAAATCTGAAGGCTCTTCAGGACTTGGAATCAAAGGCTTTGCGCGTGAAGCTGT 539
Query 609 GGAAGAAGCACTGGAATCTAAAGGGATCGC-CATTCCTCACCACAAAGATGAGAAAGACG 667
|||||||||| ||||| || || |||| | |||||||||||||||||||||||||||
Sbjct 540 GGAAGAAGCATTGGAAACTCGAGTGATC-CACATTCCTCACCACAAAGATGAGAAAGAAA 598
Query 668 AAAACAAGACTAAAGAGCTTAAACTAGAAGATGGGGCAAAAGTCCATGTCGTGAACAAAT 727
||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||
Sbjct 599 AAAACAAGACTAAAGAGATTGAACTAGAAGATGGTGCAAAAGTCCATGTCGTAAACAAAT 658
Query 728 CTCTGCCTCTACAAACTCTAATCGATATCCTCAAGCAAAATACAGGTAACAATGATATCG 787
|||||||||||||||||||||||||||||||||||||||| ||||||||| || | |||
Sbjct 659 CTCTGCCTCTACAAACTCTAATCGATATCCTCAAGCAAAAAACAGGTAACGATAAAATCA 718
Query 788 AAGTTGGGAAAATCAGACCAACCCTTTTCAATGTGTTTGGAGAAGATGCATCCCCAAAGG 847
|||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 AAGTAGGGGAAATCAGACCAACCCTTTTCAATGTGTTTGGAGACGATGCATCCCCAAAGG 778
Query 848 TTAAGAAGTTCATGAAAGTGATTCTAACAAAGCTGCAAGAAGGTAAAACTGAAGGTGGGA 907
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 TTAAGAAGTTCATGAAAGTGATTCTAACAAAGATGCAAGAAGGTAAAACTGAAGGTGGGG 838
Query 908 TATTGGGAATGATTGGGAAACTAGCTCAAGAGTTTCTTAAGCATAAACTAAACGATGACG 967
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 839 TATTGGGAATGTTTGGGAAACTAGCTCAAGAGTTTCTTGAGCATAAACTAAACGATGATG 898
Query 968 AAGAGTATGTGAAACCCGCGATGAAGACACATGTTGGGAACAAGCAAGAGGTCTATGCAG 1027
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAGTATGTGAAACCCGCGATGCAGACACATGTTGGGAACAAGCAAGAGGTCTATGCAG 958
Query 1028 GCGCGAGCAATGGTTCTCTTGCGGATAACGGTATTTTGATTAGTGGTTGCCAAACAGATC 1087
| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 959 GTGCGAGCAATGGTTCTCTTGCGGATAATGGTGTTTTGATTAGTGGTTGCCAAACAGATC 1018
Query 1088 AAACTTCTGCAGACGCGAGTCCTCAAGGTCATCCTGAAATGGCTTATGGAGCATTCACCA 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 AAACTTCTGCAGACGCGAGTCCTCAAGGTCATCCTGAAATGGCTTATGGAGCCTTCACCA 1078
Query 1148 ATGCTGTGCAGATCATACTTGAGGAGACAAAGGGTATGATTACATACAAAGAACTTGTTT 1207
||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 ATGTTGTGCAGATCATACTCGAGGAGACAAAGGGTAAGATTACATACAAAGAACTTGTTT 1138
> Ahg471839 jgi|Araly1|471839|fgenesh2_kg.1__1793__AT1G16420.1
Length=1302
Score = 108 bits (58), Expect = 1e-22
Identities = 358/495 (72%), Gaps = 51/495 (10%)
Strand=Plus/Plus
Query 67 TCAATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGAACCAAGGCGGAGCTA 126
||||||||||||||||| || ||||| |||||||| ||||| || ||| || |||| ||
Sbjct 36 TCAATGGCGAAGAAAGCAGTTTTGATAGGAATCAACTACCCAGGGACCGCGGTGGAGTTA 95
Query 127 CGGGGATGCGTCAACGATGTCCG--GAGAGTGCACAAAT-CTCTCGTGGATCGGTTT--G 181
|| || || |||||||| ||||| | || |||| |||| | || | || | ||| |
Sbjct 96 CGCGGCTGTGTCAACGACGTCCGCCG-GA-TGCAGAAATGC-CTAATCGAAC--TTTACG 150
Query 182 GATTCTCCGAGAGAA--ACATCA-C-TGAGCTGATTGATACTGACGAGTC-T-TCCACCA 235
||||| | | | || |||||| | | | ||||| || || || | || | | | |
Sbjct 151 GATTC-GCTA-ACAAGGACATCACCAT-A-CTGATCGACACAGATAAATCATGTATA-C- 204
Query 236 AACCTACAGGGAAGAATATTCGAAG-GGCATTG--TTGAATCTAGTTGAATCCGCTAAAC 292
|||||||||| ||||| | || | | | |||| | || || | | | ||| | ||
Sbjct 205 AACCTACAGGCAAGAACA-TCCACGACGAATTGACTAGACTC-A-TCGCATCAGGGCAAT 261
Query 293 CGGGTGATGTTCTTGTCGTCCATTACAGTGGACACGGGACGAGGTTGCCGGC-GGAGACT 351
| || ||| |||| ||| | |||||||||||||| || ||||| | ||| | || || |
Sbjct 262 CTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGGCACGAGAATCCCGCCTGG-GA-T 319
Query 352 -GGAG-A--AGACGA-TGATAC-TGGTTATGATGAGTGTATTGTTCCTTGTGATATGAAT 405
|||| | || ||| | ||| |||| ||| |||||||| |||||| |||||||||
Sbjct 320 AGGAGAATTAGGCGACT-CTACAGGGTT-TGACGAGTGTATCACTCCTTGCGATATGAAT 377
Query 406 CTTATCACCGATGATGAGTTTAGAGATCTTGTGGAGA-AAGTACCAAAGGAA-GC--ACA 461
|| || | || |||| |||||||| | || | | | ||| ||| ||| || ||
Sbjct 378 CTAATTAAGGACCATGATTTTAGAGAAATGGT-GTCACATGTA--AAA-GAAGGCTGTCA 433
Query 462 CATT-ACAATCATCTCAGACTCTTGTCACAGTGGTGGTCTCATCGATGAAGCTAAAG-AG 519
||| || || ||||| ||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 434 -ATTGACGATAATCTCGGACTCTTGTCACAGTGGTGGTCTCATCGAGGAAG-TAAAGGAG 491
Query 520 CAGATCGGAGAGAGC 534
||||| || || |||
Sbjct 492 CAGATTGGGGAAAGC 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5