BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79340.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927353 jgi|Araly1|927353|scaffold_202914.1 2206 0.0
> Ahg927353 jgi|Araly1|927353|scaffold_202914.1
Length=1301
Score = 2206 bits (1194), Expect = 0.0
Identities = 1263/1297 (97%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 60 ATCAGATCATTTTTTCTCAATGACGAAAAAGGCGGTGCTTATTGGGATCAATTACCCAGG 119
|||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4 ATCAGATC--TTTTTGTCAATGGCGAAAAAGGCGGTGCTTATTGGGATCAATTACCCAGG 61
Query 120 AACCAAGGCGGAGTTACGGGGATGCGTCAACGATGTTCGTCGTATGTACAAATGTCTCGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AACCAAGGCGGAGTTACGGGGATGCGTCAACGATGTTCGTCGTATGTACAAATGTCTCGT 121
Query 180 TGAACGGTACGGCTTCTCCGAGGAGAACATCACCGTTCTCATCGACACCGATGAATCCTC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CGAACGGTACGGCTTCTCCGAGGAGAACATCACCGTTCTCATCGACACCGATGAATCCTC 181
Query 240 TACTCAGCCTACTGGCAAGAACATCCGCCGCGCGCTTGCTGATCTCGTCGAATCTGCCGA 299
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 182 TACTCAGCCCACTGGCAAGAACATCCGCCGCGCGCTGGCTGATCTCGTCGGATCTGCGGA 241
Query 300 TTCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACGGTACGAGGTTGCCGGCTGAGAC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACGGTACGAGGTTGCCGGCTGAGAC 301
Query 360 TGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGAT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGGGGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGAT 361
Query 420 TACTGATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGACAAT 479
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 362 TACTGATGATGATTTCAGAGATCTTGTGGACAAAGTTCCTCAAGGTTGCAGAATGACAAT 421
Query 480 CATTTCAGACTCTTGTCACAGTGGTGGCCTAATCGACGAAGCCAAGGAGCAGATTGGAGA 539
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 422 CATTTCAGACTCTTGTCACAGTGGTGGCCTTATCGATGAAGCCAAGGAGCAGATTGGAGA 481
Query 540 GAGCACTAAGAAAGAAGCCGAGGACGAAGATGAATCTGAAGAATCTTCTTCAAGATTCGG 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAGCACTAAGAAAGAGGCCGAGGACGAAGATGAATCTGAAGAATCTTCTTCAAGATTCGG 541
Query 600 GTTTAGGAAGTTCTTGCGCAGCAAAGTGGAAGGCGCCATCGAGTCTCGAGGGTTTCACAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTTTAGGAAGTTCTTGCGCAGCAAAGTGGAAGGCGCCATCGAGTCTCGAGGGTTTCACAT 601
Query 660 TGGAGGGAACAAGAAGGATGAAGATGAGGCGGAAGAAATCGAGACTAAGGAGATTGAGCT 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 602 TGGAGGGAACAAGAAGGATGAAGATGAGGCCGAAGAAATCGAGACTAAGGAGATTGAGCT 661
Query 720 TGAAGACGGAGAAACGATCCATGCCAAAGACAAATCTCTTCCTCTGCAGACCTTGATTGA 779
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGAAGACGGTGAAAGGATCCATGCCAAAGACAAATCTCTTCCTCTGCAGACCTTGATTGA 721
Query 780 TATTCTCAAGCAGCAAACAGGGAATGATAATATCGAAGTTGGGAAAATCAGGCCAAGCCT 839
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 722 TATCCTCAAGCAGCAAACAGGGAACGATAATATCGAAGTTGGGAAAATCAGGCCAAGCCT 781
Query 840 TTTTGATGCGTTTGGTGATGATTCGAGCCCGAAAGTGAAGAAGTTTATGAAAGTGATCTT 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 782 TTTTGATGCGTTTGGTGATGATTCGAGCCCCAAAGTGAAGAAGTTTATGAAAGTGATCTT 841
Query 900 AGGTAAGCTTCAGGCTGGAAATGGAGAAGAAGGTGGATTAATGGGAATGCTTGGCAAATT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 842 AGGTAAGCTTCAGGCTGGAAATGGAGAAGAAGGTGGATTAATGGGAATGCTTGGGAAATT 901
Query 960 GGCTTCAGGGTTTCTTGAGGGTAAACTAAACGATGAAGACTATGTGAAACCCGCTATGCA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 902 GGCTTCAGGGTTTCTTGAGGGTAAACTAAACGATGAAGACTATGTGAAACCCGCGATGCA 961
Query 1020 GACACACGTTGGGAGTAAAGAAGAGGTTTATGCTGGTGGATCAAGAGGTTCGGTTCCGCT 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 962 GACACACGTTGGGAGTAAAGAAGAGGTTTATGCTGGTGGATCCAGAGGTTCGGTTCCGCT 1021
Query 1080 TCCAGACAGCGGGATACTGATCAGCGGTTGCCAAACCGATCAGACCTCTGCTGATGCGAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1022 TCCAGACAGCGGGATACTGATCAGCGGTTGCCAAACCGATCAGACCTCTGCGGATGCGAC 1081
Query 1140 TCCAGCGGGGAAACCAACTGAGGCTTATGGAGCGATGAGCAATTCGATACAGACGATATT 1199
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1082 TCCAGCGGGGAATCCAACTGAGGCTTATGGAGCGATGAGCAATTCGATACAGAAGATATT 1141
Query 1200 GGAGGAGACAGACGGTGAGATATCAAACAGAGAAATGGTTACAAGGGCTAGGAAGGCATT 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1142 GGAGGAGACAGACGGTGAGATATCAAACAGAGAAATGGTTACAAGGGCAAGGAAGGCATT 1201
Query 1260 GAAGAAGCAAGGGTTTACTCAGCAGCCAGGTTTGTATTGCCATGATGGTTATGCCAACGC 1319
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1202 GAAGAAGCAAGGGTTTACTCAGCAGCCAGGTTTGTATTGCCATGATGGGTATGCAAATGC 1261
Query 1320 TCCTTTCATCTGTTGAAAACAGAGGTTTTATTGAATG 1356
|||||||||||||||||||||||||||||||||||||
Sbjct 1262 TCCTTTCATCTGTTGAAAACAGAGGTTTTATTGAATG 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5