BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79360.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927355 jgi|Araly1|927355|scaffold_202916.1 2621 0.0
> Ahg927355 jgi|Araly1|927355|scaffold_202916.1
Length=1621
Score = 2621 bits (1419), Expect = 0.0
Identities = 1553/1619 (96%), Gaps = 3/1619 (0%)
Strand=Plus/Plus
Query 84 gaaaaCTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCCAACTCGTCA 143
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6 GAAAACTCGTGCAACATGGCAGAACCAACTCAGCCGCTTCTGACCGATTCGAACTCGTCA 65
Query 144 TCACCGAGATCTCTCGACGACACAATCGAGAGTTACATTGGAAGCTTTGGGTGGGCTCAG 203
||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 66 TCACCAAGATCTTTCGACGACACAATCGAGAGTTACATAGGAAGCTTTGGGTGGGCTCAG 125
Query 204 TTTCTTCAAGCGGCTTTAGTCTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 263
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 TTTCTTCAAGCGGCTTTAGTTTCATTCTCCGGTGTTTTCGACGCTCAACAAACTTTCATC 185
Query 264 TCTGTGTTTACAGACTCCGAACCCACGTGGCACTGCACCGACTCGAACTCGATCTGCCAT 323
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 186 TCTGTGTTCACAGACTCCGAACCCACGTGGCACTGCACCGACTCAAACTCGATCTGCCAT 245
Query 324 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAATCCATCTCCAACATCTGTATCCTCCCCAAAACCGCATGGTCTTGGGATTACTCTCCT 305
Query 384 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CACGTCTCTGTTATATCCGAATGGGGTCTCCAATGCGCCGGCTCTTTCGTCAAGGGCTTA 365
Query 444 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CCGGAGAGTTCTTTCTTCGTCGGATGTTTAATCGGAGGTTTGGTTCTCTCAACACTTGCT 425
Query 504 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTGTCCTGTCTCGTTATGGCGATATCA 563
||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 426 GATTCTTCCTTGGGTCGTAAAAACATGTTGTTTCTCTCGTGTCTCGTGATGGCGATTTCA 485
Query 564 ACGATGCTAACGGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 623
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ACGATGCTAACCGTTTTCTCACCAAACATTTGGGTTTACGCTGTTCTTCGATTCGTTAAT 545
Query 624 GGATTTGGTCGAGCGACGATAGGGACATGTGCGCTCGTTCTTTCGACGGAATTAGTTGGG 683
||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 546 GGATTCGGTCGAGCGACGATAGGGACATGTGCCCTCGTGCTTTCGACGGAATTGGTTGGG 605
Query 684 AAGAAATGGCGAGGACGAGTAGGGATAATGAGTTTCTTCGGATTCATGCTTGGCTTTTTG 743
|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 606 AAGAAATGGCGAGGACGAGTTGGAATCATGAGTTTCTTCGGATTCATGCTTGGATTTTTG 665
Query 744 TCTCTTCCTTTGATGGCTTACATGAACAGAGGAAGTTCTTGGAGGATTCTCTACGCATGG 803
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct 666 TCTCTTCCATTGATGGCTTACATGAACAGAGGAAGTTCGTGGAGGATTCTCTATGTATGG 725
Query 804 ACTTCGATTCCAACGATAATATACTGCGTTCTTGTTCGGTTTTTCGTTTGTGAGTCTCCA 863
|| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 726 ACGTCGATTCCGACAATAATCTACTGCGTTCTTGTTCGATTTTTCGTTTGTGAGTCTCCG 785
Query 864 AGGTGGCTTTTCGTTAGAGGCCGTAGAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 923
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 786 AGGTGGCTTTTCGTTAGAGGTCGTAAAGAAGAAGCTATTTCGATTCTCAAAAGGGTTGCT 845
Query 924 TCGATTCCGTCTACTGATGTAAGCAGTGGTGGTGCAATATCTATGAGTTTTTCGAGCTTA 983
||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 846 TCGATTCCGTCGACTGATGTAAACATTGGTGGTGCAATATCTATGAGCTTTTCGAGCTTA 905
Query 984 CCTTTTGAAGAAGATGAAGAGAAGCCTAGTACTAATGTTAACATCTTCACGACCATGAAG 1043
|| |||||||| || ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 906 CCATTTGAAGATGAGGAAGAGAAGCCTA--A-TAATGTTAACATCTTCACGACCATGAAG 962
Query 1044 GTGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGTTGGTAGAGAAAAGATGGGCGCTTAAGAGATTATCCGCGGTAATGGCCATTGCGTTC 1022
Query 1104 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGGATTGGTTTGGTCTATTACGGGATGCCTTTAGCGTTATCGAATCTTGATTTCAACATC 1082
Query 1164 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACGCTTTTC 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1083 TATTTAAGTGCAGCGTTTAATGCGTTGATGGATTTACCAGCGAACCTCATCACTCTTTTC 1142
Query 1224 CTAGTCGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CTAGTTGATAAACTCAGTAGGAGAAACGCGCTTATCGGATTTACGGCTTTAGGTGGAGTC 1202
Query 1284 TCTAGCGTTCTCATATTTGCGTTACATAATATGAGAATTGGAAACCACGGGGCGTTACAG 1343
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||
Sbjct 1203 TCTAGCGTTCTCATATTTGCGTTACAGAATATGAGAATCGGAAACCATGGGGCGCTACAG 1262
Query 1344 TTGGCGTTAGAGCTAATCTCTTACTTTAGCGCGTGTTCGGCTTTTAACATGGAGATGATA 1403
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1263 CTGGCGTTAGAGCTAATCTCTTACTTTAGTGCGTGTTCCGCTTTTAACATGGAGATGATA 1322
Query 1404 TACACGATCGAGCTGTTTCCGACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1463
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TACACAATCGAGTTGTTTCCTACATGTGTGAGAAACTCGGCTATCGCAATGGCTAGACAG 1382
Query 1464 GCTTTGGTGCTTGGTGGAGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACGCG 1523
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1383 GCTTTGGTGCTTGGTGGGGTTTTCAGCCCTATTATGGTAGCAGCTGGTCGGAAAAACTCG 1442
Query 1524 TTCTGGTCGTTCGGATTGTTTGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1583
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TTCTGGTCGTTCGGGTTGTTCGGTCTTGCTATAGGTTTGTTGGGATTGTTTGCAGTTGGA 1502
Query 1584 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAC 1643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TTGCCAGAGACTAGAGGGAGTGATCTATGTGACACTATGGACGAGGAAGAGTGCAAAGAT 1562
Query 1644 CGGCGGAGTAAAGTCGCCGTTAATAATGTCATTGCATGAAATGGTGAAGAATTTGAAAA 1702
|| ||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||
Sbjct 1563 CGACGGAGTAAAGTCGCCATTAATAGTGTGATTGCATGATATGATGAAGAATTTGAAAA 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5