BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79370.1
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316828 jgi|Araly1|316828|fgenesh1_pm.C_scaffold_2001861 2682 0.0
> Ahg316828 jgi|Araly1|316828|fgenesh1_pm.C_scaffold_2001861
Length=1641
Score = 2682 bits (1452), Expect = 0.0
Identities = 1578/1641 (96%), Gaps = 0/1641 (0%)
Strand=Plus/Plus
Query 1 ATGGATTATTATCTGAATAATGTTATCTTCTCAGTTGTTGTCACATTTTCGATCACTCTG 60
||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1 ATGGATTATTATCTGTATAATGTTATCTTCTCAGTTTTTGTCACATTTTCTATCATTCTG 60
Query 61 AATATTGTGTTTCTCATAAAAAGCGTTGTCGCCCGTTTTCTTGGTCGTCGTAAGAAACTG 120
||||||||||||||||||||||||||||| | |||||||||| || |||||||| | |||
Sbjct 61 AATATTGTGTTTCTCATAAAAAGCGTTGTAGACCGTTTTCTTAGTGGTCGTAAGCAGCTG 120
Query 121 CCTCCATGCCCACGGGGATTTCCGATCATTGGGAACTTAGTAGGAATGCTCAAGAACCGA 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCCACGCCCACGGGGATTTCCGATCATTGGGAACTTAGTAGGAATGCTCAAGAACCGA 180
Query 181 CCAACCTCTAAATGGATAGTTCGTGTAATGAACGATATGAAGACGGATATAGCTTGCTTC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAACCTCCAAATGGATAGTTCGTGTAATGAACGATATGAAGACGGATATAGCTTGCTTC 240
Query 241 CGGTTTGGTCGTGTCCACGTCATTGTCATAACGTCCGATGTGATTGCCCGAGAAGTCGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGTTTGGTCGTGTCCACGTCATTGTCATAACGTCCGATGTGATTGCCCGAGAAGTCGTT 300
Query 301 CGAGAGAAAGACGCAGTTTTTGCGGACAGGCCAGATTCTTACTCTGCCGAGTACATTAGT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CGAGAGAAAGACGCAGTTTTTGCGGACAGGCCAGACTCTTACTCTGCCGAGTACATTAGT 360
Query 361 GGCGGGTACAATGGGGTAGTGTTCGACGAGTATGGAGAGAGACAAATGAAGATGAAGAAA 420
||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 361 GGCGGATACAATGGGGTAGTGTTCGACGAGTATGGAGAGAGGCAAAAGAAGATGAAGAAA 420
Query 421 GTGATGTCGTCGGAGTTAATGTCTACAAAGGCTTTAAACTTGTTACTCAAAGTTAGAAAC 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGATGTCGTCAGAGTTAATGTCTACAAAGGCTTTAAACTTGTTACTCAAAGTTAGAAAC 480
Query 481 TTAGAATCCGACAACCTCCTCGCGTATGTTCATAACCTATACAACAAAGATGAGTCCAAG 540
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 481 TTAGAATCCGACAACCTCCTCGCCTATGTTCATAACCTATACAAGAAAGATGAGTCCAAG 540
Query 541 ACAAAACACGGCGCCGTAGTGAACGTGAGAGATATTGTGTGCACTCACACACACAATGTG 600
|||||| | |||| | ||||||| ||||| ||||| ||||||| ||||||||||||||||
Sbjct 541 ACAAAAAATGGCGTCTTAGTGAATGTGAGGGATATCGTGTGCAATCACACACACAATGTG 600
Query 601 AAGATGAGACTCTTGTTTGGTCGGAGACATTTCAAGGAGACGACGATGGACGGGAGTCTC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGATGAGACTTTTGTTTGGTCGGAGACATTTCAAGGAGACGACGATGGACGGGAGTCTC 660
Query 661 GGACTTATGGAGAAAGAACATTTTGACGCAATTTTCGCGGCTCTTGATTGTTTCTTTAGC 720
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 661 GGACTTATGGAGAAAGAACATTTTGACGCCATATTCAAGGCTCTTGATTGTTTCTTTAGC 720
Query 721 TTTTACGTAGCCGATTACTACCCTTTCTTAAGAGGATGGAACCTCCAGGGAGAGGAGGCT 780
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 721 TTTTACGTAGCCGATTATTACCCTTTCTTAAGAGGATGGAATCTCCAGGGAGAGGAGATT 780
Query 781 GAGTTAAGAGAAGCCGTTGATGTGATTGCTAGGTACAATAAGATGATTATCGATGAGAAG 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGTTAAGAGAAGCCGTTGATGTTATTGCTAGGTACAATAAGATGATTATCGATGAGAAG 840
Query 841 ATAGAGTTGTGGAGGGGGCAGAATAAAGACTACAATCGTGCGGAGACGAAGAATGATGTT 900
|||||||||||||||||| |||||||| ||| | ||||| |||||| |||||||||||||
Sbjct 841 ATAGAGTTGTGGAGGGGGAAGAATAAAAACTGCTATCGTACGGAGAAGAAGAATGATGTT 900
Query 901 CCTATGATCAAGGATTGGCTCGACATTCTCTTCACTCTTAAAGATGAGAATGGGAAGCCG 960
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGTGATCAAGGATTGGCTCGACATTCTCTTCACTCTTAAAGATGAGAATGGGAAGCCG 960
Query 961 TTGCTTACCCCGCAAGAAATCACACATCTCTCTGTGGATCTTGATGTAGTAGGGATTGAT 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCTTACCCCACAAGAAATCACACATCTCTCTGTGGATCTTGATGTAGTAGGGATTGAT 1020
Query 1021 AATGCAGTGAATGTAATAGAGTGGACACTTGCGGAAATGTTGAACCAGAGAGAGATTCTA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATGCAGTGAATGTAATAGAGTGGACACTTGCGGAAATGTTGAACCAGAGAGAGATTCTA 1080
Query 1081 GAAAAAGCGGTGGAAGAGATCGATATGGTTGTCGGAAAAGAAAGACTTGTTCAAGAATCC 1140
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GAAAAAGCGGTGGAAGAGATCGATATGGTTGTCGGAAAAGATAGACTTGTTCAAGAATCC 1140
Query 1141 GACGTACCAAATCTAAACTACGTCAAAGCTTGTTGCAGAGAGACCCTGAGACTTCACCCT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GACGTACCAAATCTAAACTACGTCAAAGCTTGTTGCAGAGAGACCCTGAGACTTCACCCA 1200
Query 1201 ACCAATCCTTTCCTTGTCCCTCACATGGCACGTCATGACACAACTCTCGCTGGCTATTTC 1260
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1201 ACCAATCCTTTCCTCGTCCCTCACATGGCACGTCATGACACAACTCTAGCTGGTTATTTC 1260
Query 1261 ATCCCAAAAGGCAGTCATATTCTAGTGAGTCGTCCGGGTGTTGGTCGAAACCCTAAGACA 1320
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1261 ATCCCAAAAGGCAGTCATATTCTAGTGAGTCGTCCTGGTGTTGGTCGAAACCCCAAGACA 1320
Query 1321 TGGGATGAGCCACTCATCTACAGGCCTGAGCGCCATATAACCGGCAACGAAGTGGTGTTG 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1321 TGGGATGAGCCACTCATCTACAGGCCTGAGCGCCATATAACCGGCAACGAAGTGATGTTG 1380
Query 1381 ACTGAACCAGACTTACGACTTGTTTCATTTGGAACTGGTAGACGCGGCTGCGTTGGAGCT 1440
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1381 ACTGAACCAGACTTACGACTTGTTTCATTTGGAACTGGTAGGCGTGGCTGCGTTGGAGCG 1440
Query 1441 AAGCTTGGAACGTCCATGATTGTTACGTTGTTGGGTAGGCTTCTCCAAGGGTTCGACTGG 1500
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AAGCTTGGAACCTCCATGATTGTTACGTTGTTGGGTAGGCTTCTCCAAGGGTTCGACTGG 1500
Query 1501 ACCATTCCTCCTGGTACGACGGACAGAGTCGAGCTAGTCGAGTCAAAAGAAAATCTGTTC 1560
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1501 ACCATTCCTCCTGGTACGACGGACAAAGTCGAGCTAGTCGAGTCAAAAGAAAATTTGTTC 1560
Query 1561 ATGGCTAATCCTTTGATGGCTTGTGTGAAGCCCAGATTAGATCCAAACATGTACCCGAAA 1620
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1561 ATGGCTAATCCTTTGATGGCTTGTGTGAAGCCCAGATTAGATCCCAACATGTACCCAAAA 1620
Query 1621 CTCTGGACCGGTCCAGCTTGA 1641
||||||||||| |||||||||
Sbjct 1621 CTCTGGACCGGACCAGCTTGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5