BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79380.1
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477103 jgi|Araly1|477103|fgenesh2_kg.2__2233__AT1G79380.1 2422 0.0
> Ahg477103 jgi|Araly1|477103|fgenesh2_kg.2__2233__AT1G79380.1
Length=1728
Score = 2422 bits (1311), Expect = 0.0
Identities = 1636/1779 (92%), Gaps = 78/1779 (4%)
Strand=Plus/Plus
Query 1 ATATATAGTTTAAtttttttCTAGGTTTTCGTTCGAACTCATGTGGGTTCAGTAAAT--A 58
||||||||||| |||||||||| || ||||| | ||||||||||||||||||||| |
Sbjct 1 ATATATAGTTTCATTTTTTTCT-GGGTTTCG---GTACTCATGTGGGTTCAGTAAATAAA 56
Query 59 AATG-TT-TAAGTCCCCATCTGGCCGCGTCAAAAATACTTAGATAACAACAATTAGTGGT 116
|||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 57 AATGTTTATAAGTCCCCATCTGGCCGCGTCAAAAATAC-TAGAT---AACAATTAGTGGT 112
Query 117 TGACATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAATTAATAAAATT-ATAAAGAA 175
|| ||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||
Sbjct 113 TGGCATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAAATAAT-AAATTAATTAAGAA 171
Query 176 CAGTGAAGCAATAAATGTTTCCTTGGCGTCTTGAAGAGTAGTCTTCTTAAATATTCCAGC 235
||||||||||||||| | || || ||||||||||||||||| |||
Sbjct 172 CAGTGAAGCAATAAA--------T---GT-TT------TAGTCTTCTTAAATATTTCAG- 212
Query 236 CCaaaaaaaaaaaGATTCTATCCATTATCAAGAGAAGaaaaaaaaTCTGAATTCCAATTC 295
| |||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 213 CAAAAAAAAAAAAGATTCTATCCATTATCAAG-G-A-AAAAAAAATCTGAATTCGAATTC 269
Query 296 gaagaagaagaagaagaagaaagGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 355
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 ------G-AG--GAAGAAGAAAGGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 320
Query 356 GTGG---AA--A-AAGCAGAAGCAGTAGAAATATGACTCTGGGAACGACGTCGTCTCAAT 409
|||| || | ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 321 GTGGAAAAAGCAGAAGCAGAAGCAGTAGAAGTATGACTCTGGGAACAACGTCGTCTCAAT 380
Query 410 CTCATGAACCATCACCGT---CGGATCCTTCACTCTCCCTTGCCGATAATACCAACGCCA 466
||||||||||||| |||| |||||||| || |||||||||||||||||| |||||||
Sbjct 381 CTCATGAACCATCTCCGTCGGCGGATCCTCCAGTCTCCCTTGCCGATAATATCAACGCCG 440
Query 467 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCTTCCCTCGACCAGGTATCAAAAG 526
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 441 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCCTCCCTCGACCAGGTATCAAAAG 500
Query 527 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 560
Query 587 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCGCTCGGCGAAA 646
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 561 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCCCTCGGCGAAA 620
Query 647 CTTCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTTGATG 706
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 621 CTCCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTCGACG 680
Query 707 AAGACAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCATGACGAGGAAGTGT 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 681 AAGATAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCACGACGAGGAAGTGT 740
Query 767 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 800
Query 827 AGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 860
Query 887 CTGCTG-TCGACATTGTGGAGAAGAACAACGGACAATTCCATGTTCTGGTGATTGTTGCA 945
|||| | | |||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 861 CTGC-GATTGACATTGTCGAGAAGAACAACGGACAATTCCATGTTCTGGTGATCGTCGCA 919
Query 946 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 979
Query 1006 ACAACCATCGACGCGATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1065
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCAACCATCGACGCCATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1039
Query 1066 GTTGGAGACGGACCATGGGAAGACATGAGGAAGTTCGATGATAAGATCCCTAAGCGTGAA 1125
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1040 GTTGGAGACGGGCCATGGGAAGACATGAGGAAGTTTGATGACAAGATCCCTAAGCGTGAA 1099
Query 1126 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACGAGAAACTCACCAGAGTCT 1185
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1100 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACCAGAAACTCACCAGAGTCT 1159
Query 1186 GCCAAAGAAACTGCTTTTGCTCTAGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1245
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1160 GCCAAAGAAACTGCCTTTGCTCTTGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1219
Query 1246 GCCATCGAACTCCGCTTACTCGGGAAGCAGACGGGCTTAGCGAAGACAATAGTTCCGAGG 1305
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 1220 GCCATCGAACTCCGCTTACTCGGGAAACAGACGGGCACAGCTAAGACAATAGTTCCGAGG 1279
Query 1306 CCACCACCAATTCCGTACACACCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1365
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCACCACCAACTCCATACACGCCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1339
Query 1366 GCATCACCTGAACAAACCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1425
| | || || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 G-A--AC---AA-A--CCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1390
Query 1426 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1450
Query 1486 TGTCGAGTAAGGATCACGAACCGGCTAAAGCTTTACACATGATCAATGGCCACGAA-Ctt 1544
|| |||||| ||||||||| ||| |||| ||||||||| ||||||||| |||| || |||
Sbjct 1451 TGCCGAGTACGGATCACGAGCCGCCTAAGGCTTTACACGTGATCAATGCCCACAAAACTT 1510
Query 1545 tttttCTGACCACGGCTTTACACGTGATCAATGCC-A-A--C--A-AA-CTTTATCTCTG 1596
||| |||||||||||||||||||||||||||||| | | | | || |||||| ||||
Sbjct 1511 TTTC-CTGACCACGGCTTTACACGTGATCAATGCCGACATGCCGAGAAACTTTATTTCTG 1569
Query 1597 CACATAACAAATCGCTTGCACATAG---CCATCTCCTTTGTAGAATCTACAATTTGGTTT 1653
||||||||||| ||||||| ||| || |||||||||||||||||||| ||||||||
Sbjct 1570 CACATAACAAAAGGCTTGCATATACTATCCTTCTCCTTTGTAGAATCTACAGTTTGGTTT 1629
Query 1654 GCCAAGTGTTTCTGACAATGTTCCACAATCAGCGTGTACCATGTAATTCTGTATGTACTG 1713
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1630 GCCAAGTGTTTCTGAGAATGTTCCACAATCAGCATGTACCATGTAATTCCGTATCTACTA 1689
Query 1714 TAAAACATTAACTTTGCAAACAAGAATGAAGAAGCAATG 1752
||||||| |||||||||||||||||||||||||||||||
Sbjct 1690 TAAAACAGTAACTTTGCAAACAAGAATGAAGAAGCAATG 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68333899530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5