BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79390.1

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477104 jgi|Araly1|477104|fgenesh2_kg.2__2234__AT1G79390.1         887    0.0  


> Ahg477104 jgi|Araly1|477104|fgenesh2_kg.2__2234__AT1G79390.1
Length=603

 Score =  887 bits (480),  Expect = 0.0
 Identities = 548/581 (94%), Gaps = 4/581 (1%)
 Strand=Plus/Plus

Query  37   gagagagagaTGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGAGAGAGATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG  60

Query  97   ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTTTATGTGGTGTCATTCCTGGC  156
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  61   ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTCTATGTGGTGTGATTCCTGGC  120

Query  157  GTTATTGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC  216
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTATCGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC  180

Query  217  CTCCGTAAATCTGCTCGCCCAGATACTCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA  276
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  181  CTCCGTAAATCTGCTCGCCCCGATACCCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA  240

Query  277  GCTGAATATCTTGGTGAGTTGAAACAGAAGCAGGATACAAACGACAGATACGTTGCTGCT  336
            ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct  241  GCTGAGTATCTCGGTGAGTTGAAACAGAAGCAGGACACAAATGACAGATACGTGGCTGCT  300

Query  337  CTTAGGGGAGAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAATGCCAAAGCCA  396
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  301  CTTAGGGGACAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAGTGCCAAAGCCA  360

Query  397  GATGACACGGTGACAACCAAAACTCAGTAA-GGATGAATTATTTTAAGAGTCAATGTTAG  455
            ||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||
Sbjct  361  GATGACACGGTGACAACCAAAGCTCAGTAAAGGATGAATTCTTTTAAGAGTCAGTGTTAG  420

Query  456  TGAATGCCTCTCACTCGAATCTTTTGTCGATACAAAAATGGCGTGTTTCCTGGCCGTAAT  515
            || |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct  421  TGGATGCCTCTCACTCGAATCTTTTGTCGATGCAAAAATGGCATGTTTACTGGCCGTAAT  480

Query  516  ATCTTTTGTTTTTGAAACCGGCATCTAGCGACACAACTTTTGTGCTATGCAAACGGCTAC  575
            || |||| |||||| |||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct  481  ATTTTTT-TTTTTGGAACCGGCATCTAGCGACACAGCTTTTGTGCTATGCAAACTGCTGC  539

Query  576  AA-TGTCAATCACTTCAAACCTTTTGTTATGATGAATAAAA  615
            || | ||| |||| |||||| ||||| |||||| |||||||
Sbjct  540  AACT-TCAGTCACCTCAAACATTTTGCTATGATAAATAAAA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24436789797


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5