BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79400.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652 3784 0.0
Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395 1397 0.0
> Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652
Length=2352
Score = 3784 bits (2049), Expect = 0.0
Identities = 2255/2356 (96%), Gaps = 8/2356 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCAAAGTTGTTGCTTTGCTTACCTCAAGGAGATGAACTGTTTAATCCCCTTAAT 60
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGATCCAAAGTTGTTGTTTTGCTTACCTCAAGGAGATGAACTCTTTAATCCCCTTAAT 60
Query 61 ACCATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTGTTTTATCTCCTTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTGTTCTATCTCCTTCTT 120
Query 121 AAACCCTGCGGCCAAGCTGGTCCCGTTGCCCAGATTCTTGCTGGGATTGTGTTGAGTCCT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCCTGTGGCCAAGCTGGTCCCGTTGCCCAGATTCTTGCTGGGATTGTGTTGAGTCCT 180
Query 181 GTTTTGCTCTCAAGAATACCTAAAGTTAAGGAATTCTTCCTCCAGAAAAATGCAGCAGAT 240
||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 GTTCTGCTCTCAAGAATATCTAAAGTTAAGGAATTTTTCCTCCAGAAAAACGCAGCAGAT 240
Query 241 TATTACTCCTTCTTCTCCTTCGCTTTACGGACATCTTTCATGTTCTTGATCGGTCTTGAA 300
|||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 241 TATTACTCTTTCTTCTCGTTCGCTCTACGGACATCTTTCATGTTCTTGATTGGTCTTGAA 300
Query 301 GTGGATCTACATTTCATGAGAAGAAATTTCAAGAAAGCTGCGGTGATAACCTTGAGCTCA 360
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 GTGGATCTACATTTCATGAGAAGGAATTTCAAGAAAGCTGCCGTGATAACCTTGAGCTCA 360
Query 361 TTCGTGGTTTCCGGCCTCCTCAGTTTCGCTTCCTTAATGTTATTCATCCCTTTGTTTGGG 420
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGGTTTGCGCCCTCCTCAGTTTCGCTTCCTTAATGTTATTCATCCCTTTGTTTGGG 420
Query 421 ATCAAAGAAGATTACTTTACGTTTTTCTTGGTTCTTCTCGTTACCTTGTCTAACACGGCA 480
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 ATCAAAGAAGACTACTTTACGTTTTTCTTGGTTCTTCTCGTTACCTTGACTAACACGGCA 480
Query 481 TCTCCTGTCGTAGTCCGTTCAATCGCTGATTGGAAACTCAACACATGTGAGATCGGACGG 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCTCCTGTCGTAGTCCGTTCAATCGCTGATTGGAAACTCAACACATCTGAGATCGGACGA 540
Query 541 CTGACAATCTCATGTGCGTTGTTCATCGAATTAACAAACGTGGTTCTCTACACTATAATC 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 541 CTGACAATCTCATGTGCGTTGTTCATCGAATTATCAAACGTGGTTCTCTACACTGTAATC 600
Query 601 ATGGCGTTCATCTCTGGAACTATCATACTTGA-ACTCTTCTTGTTTCTTTTGGCAACCGT 659
|| ||||||||||||||| |||| ||| | | |||||| | |||||||| |||||||
Sbjct 601 ATCGCGTTCATCTCTGGATCTATGATAGGT-ACTCTCTTCCTCTTTCTTTTCGCAACCGG 659
Query 660 AGCCCTAATATTGATCAACATG-GTCTTAGCTCCATGGCTTCCAAAGAGGAACCCTAAAG 718
| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 660 ATCCCTAATCTTGATCAACA-GTTTCTTAGCTCCATGGCTTCCAAAGAGGAACCCTAAAG 718
Query 719 AGAAGTACCTCTCAAAGGCTGAAACTTTAGTTTTCTTCATCTTCCTTCTCATCATCGGTA 778
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 AGAAGTACCTCTCAAAGGCTGAAACTCTAGTTTTCTTCATCTTCCTTCTCATCATCGGTA 778
Query 779 TAACTATCGAATCCTACGATGTAAATTCCTCGGTTTCTGTTTTCGCCATTGGCATAATGT 838
|||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||
Sbjct 779 TAACTATCGAATCCTACGATGTCAATTCCTCGGTTTCGGTTTTCACCATTGGAATAATGT 838
Query 839 TTCCACGACAAGGAAAGACTCACAGAACGTTGATACAACGGCTTAGTTACCCGATTCACG 898
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 839 TTCCACGACAAGGAAAGACTCACAGAACGTTGATTCAACGGCTTAGTTATCCGATCCACG 898
Query 899 AGTTTGTTCTTCCGGTTTACTTTGGTTACATTGGATTCAGATTCAGCATCATCGCGTTAA 958
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGTTTGTTCTTCCCGTTTACTTTGGTTACATTGGATTCAGATTCAGCATCATCGCGTTAA 958
Query 959 CCAAACGCTTTTACCTCGGTATAGTTATTATCGTGATTGTAACCATAGCTGGGAAATTTA 1018
||||||| |||||||||||| |||||||||| || ||||||||||||| |||||||||||
Sbjct 959 CCAAACGATTTTACCTCGGTCTAGTTATTATAGTAATTGTAACCATAGTTGGGAAATTTA 1018
Query 1019 TTGGTGTAATAAGCGCTTGTATGTACCTGAAGATCCCTAAGAAATATTGGCTTTTCTTAC 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 TTGGTGTAATAAGCGCTTGTATGTACCTGAAGATCCCTAAGAAGTATTGGCTTTTCTTAC 1078
Query 1079 CCACCATTCTCTCTGTTAAAGGCCATGTCGGTCTTCTTCTTCTAGACTCCAACTATTCCG 1138
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 1079 CCACCATTCTCTCTGTTAAAGGCCATGTGGGTCTTCTTCTTCTAGACTCAAACTACTCCG 1138
Query 1139 AAAAGAAATGGTGGACCACAACTATTCATGATATGATGGTGGCTGCTTTGGTGATAACGA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 AAAAGAAATGGTGGACCACAACTATTCATGATATGATGGTGGCTGCTTTGGTGATCACGA 1198
Query 1199 CGCTAGTAAGTGGTGTTCTGGCATCTTTCTTGCTTAAAACAAGAGAGAAGGACTTTGCTT 1258
|||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 1199 CGCTAGTAAGCGGTGTTCTGGCGTCGTTCTTGCTTAAAGCAAGAGAGAAGGACTTTGCTT 1258
Query 1259 ACGAGAAGACTTCGCTTGAGTCTCATAACACGAACGAGGAATTACGCATTTTATCGTGCG 1318
||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 1259 ACGAGAAGACTTCGCTTGAATCTCACAACACGAACGAGGAATTACGCGTTTTATCATGCG 1318
Query 1319 CCTATGGAGTCCGTCATGCTCGCGGTGCGATCTCTCTTGTCTCGGCCTTGAGCGGTTCTC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCTATGGAGTCCGTCATGCTCGCGGTGCGATCTCTCTTGTCTCGGCCTTGAGCGGTTCTC 1378
Query 1379 GTGGAGCCTCTGATCCGTTTACACCTCTGCTTATGCACCTTGTACCCCTCCCCAAGAAAC 1438
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGGAGCCTCTGATCCGTTCACACCTCTGCTTATGCACCTTGTACCCCTCCCCAAGAAAC 1438
Query 1439 GAAAATCGGAACTGATGTATCATGAGCACGACGAAGATGGAGGCAATGCGAATGGAGATG 1498
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 GAAAATCGGAATTGATGTATCATGAACACGACGAAGATGGAGGCAATGCGAATGGAGATG 1498
Query 1499 ACGAATTCGGGACCAACGAAGGTTTAGAGATCAACGATTCGATTGATTCGTTTGCTAAAG 1558
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 ACGAATTTGGGACCAACGAAGGTTTAGAGATCAACGATTCGATTGATTCGTTTGCCAAAG 1558
Query 1559 ACAGCAAAATCTTGATCCAACAAGTGAAGCTCGTGACTCAGATGCTTAATATGCACGAAG 1618
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1559 ACAGCAAAATCTTGATCCAACAAGTGAAACTCGTGACGCAGATGCTTAATATGCACGAAG 1618
Query 1619 AGATCTGTAACGCAACAGAGGATCTTCGAGTTTCCATTGTATTTCTTCCGTTTCATAAAC 1678
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1619 AGATATGTAACGCAACAGAGGATCTTCGAGTTTCGATTGTGTTTCTTCCGTTTCATAAAC 1678
Query 1679 ACCAGAGAATCGATGGGAAGACTACAAACGATGGGGAACTGTTCAGACAGATGAACCGTA 1738
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1679 ACCAGAGAATCGATGGGAAGACTACAAACGATGGGGAACTTTTCAGACAGATGAACCGTA 1738
Query 1739 ATGTTCTAAGGCACGGTCCGTGTTCCATTGGCATTTTTGTGGACCGTAACATAACCGGAT 1798
||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1739 ATGTTCTAAGGCACGCTCCGTGTTCGATTGGTATTTTTGTGGACCGAAACATAACCGGAT 1798
Query 1799 TTCAGCAGCCGCACGGGTTTGATTCTGTACAACACGTCGCGA-CATTGTTCTTTGGTGGT 1857
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1799 TTCAGCAGCCGCACGGGTTTGATTCTGTACAACACGTCGC-AGCATTGTTCTTTGGTGGT 1857
Query 1858 CCGGATGATCGTGAGGCTCTTGCTCTGTGC-AGATGGCTCGCGAATAATACTCTGATTCA 1916
|||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1858 CCGGATGATCGTGAGGCTCTTGCTCTGTGCAAG-TGGCTCGCGAACAACACTCTGATTCA 1916
Query 1917 TCTCACAGTTATACAGTTTGTCTCCGAGGAATCAAAGGCAGAGACTCCTGTTGGAAATGC 1976
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TCTCACAGTTATACAGTTCGTATCCGAGGAATCAAAGGCAGAGACTCCTGTTGGAAATGC 1976
Query 1977 TATGACACGAGATAATAATGAGGTTTTCATGGAAGTTCTGGGAAGGAATCAAACTGAACA 2036
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 GATGACACGAGATAATAAAGAGGTTTTCATGGAAGTTCTGGGAAGGAATCAAACTGAACA 2036
Query 2037 AGAAACAGATCGGAGCTTCTTAGAAGAATTCTATAACAGATTTGTAACAACGGGACAAGT 2096
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2037 AGAAACAGATCGGAGCTTCTTAGAAGAATTCTATAACAGATTTGTAACGACGGGACAAGT 2096
Query 2097 GGGGTTCATAGAGAAGCTAGTGAGCAATGGACCGCATACGCTGACTATTCTAAGAGAGAT 2156
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2097 GGGGTTCATAGAGAAGCTTGTGAGCAATGGACCGCACACGCTGACGATTCTAAGAGAGAT 2156
Query 2157 TGGAGAGATGTATTCACTGTTTGTGGTCGGAAAGAGCACAGGAGATTGCCCTATGACGGT 2216
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2157 TGGAGAGATGTATTCACTGTTTGTGGTCGGAAAGAGCAGAGGAGATTGCCCTATGACGGT 2216
Query 2217 GAGAATGAAAGATTGGGAAGAGTGTCCGGAGCTTGGAACTGTCGGTGATTTCTTGGCTTC 2276
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2217 GAGAATGAAAGATTGGGAAGAGTGTCCGGAGCTCGGAACTGTCGGTGATTTCTTGGCTTC 2276
Query 2277 GTCTTTAGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACAGAGACATTCACATGATAG 2336
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 2277 GTCTTTAGATGTAAATGCGTCAGTATTAGTAGTTCAAAGACAAAGACATTCACATGATAG 2336
Query 2337 CTTTATAGATGATTAG 2352
||||||||||||||||
Sbjct 2337 CTTTATAGATGATTAG 2352
> Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395
Length=2358
Score = 1397 bits (756), Expect = 0.0
Identities = 1899/2432 (78%), Gaps = 154/2432 (6%)
Strand=Plus/Plus
Query 1 ATGGATCCAAAGTTGTTGCTTTGCTTACCTCAAGGAGATGAACTGTTTAATCCCCTTAAT 60
|||||||||||| ||||| |||| ||||| ||||||||| | |||||||||| || |||
Sbjct 1 ATGGATCCAAAGATGTTGTTTTGTTTACCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60
Query 61 ACCATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTGTTTTATCTCCTT-CT 119
|| ||||||||||||||||||||||||||||||||||||||||| || || || ||| ||
Sbjct 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCT-CTTCCT 119
Query 120 TAAACCCTGCGGCCAAGCTGGTCCCGTTGCCCAGATTCTTGCTGGGATTGTGTTGAGTCC 179
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 120 TAAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGA---- 175
Query 180 TGTTTTGCTCTCAAGAATACC-TAAAGTTAAGGAATTCTTCCTCCAGAAAAATGCAGCAG 238
| ||||||| ||| ||| || ||||| | || ||||||||||||||| || |||| |
Sbjct 176 -G-TTTGCTCACAATAAT-CCGCAAAGTCCACGAGTTCTTCCTCCAGAAAGATTCAGC-G 231
Query 239 A-TTATTAC-TCCTTCTTCTCCTTCGCTTTACGGACATCTTTCATGTTCTTGATCGGTCT 296
| |||||| | ||| ||||| |||| |||||| ||||||||||||||||||||||||||
Sbjct 232 AGCTATTACAT-CTTTTTCTCATTCGTTTTACGAACATCTTTCATGTTCTTGATCGGTCT 290
Query 297 TGAAG-TGGATCTACATTTCATGAGAA-GAAATTTCAAGAAAGCTGC--GGTGATAACCT 352
| || | ||||| | ||||| | || |||| || ||| || || | || ||||| |
Sbjct 291 CG-AGATCGATCTTGACTTCAT-AAAACGAAACTTAAAG-AA-CTCCATTGTCATAACTT 346
Query 353 TGAGCTCATT-CGTGGTTTCCGGCCTCCTCAGTTTCGC-TTCCT-TAATGTTATTCATCC 409
|| |||| || | | || ||| || || | || | ||||| | | ||| ||||||
Sbjct 347 TGGGCTCCTTAC-TCACCTCTGGCATCATCTGGCTCCCTTTCCTCTGGT-TTA-TCATCC 403
Query 410 CTTTGTTTG-GGATCAAAGAAGATTACTTTACGTTTTTCTTGGTTCTT-CTCGTTACCTT 467
||| || |||||||| |||| ||| || |||| ||| | ||| ||| |||||||
Sbjct 404 ATTT-CATGCAGATCAAAGGCGATTTCTTAACATTTTACTTAG-CCTTCCTCATTACCTT 461
Query 468 GTCTAACACGGCATCTCCTGTCGT-AGTCCGTTCAATCGCT-GATTGGAAACTCAACACA 525
||| ||||||||| |||||||||| | ||||||| ||| | |||||||||||| |||||
Sbjct 462 GTCCAACACGGCAGCTCCTGTCGTCA-TCCGTTCGATC-ATCGATTGGAAACTCCACACA 519
Query 526 TGTGAGATCGGACGGCTGA-CAATCTCATGTGCG-TTGTTCATCGA-ATTAACAAACGTG 582
| ||||||||||||||| | |||||||||||| | ||||||||||| | |||| ||| |
Sbjct 520 TCTGAGATCGGACGGCT-AGCAATCTCATGTG-GATTGTTCATCGAGA-TAACCAACATA 576
Query 583 GTTCTCTACACTATAATCATGGCGTTCATCTCTGGAACTATCATAC-TTGAACTCTTCTT 641
||||||||||||| || | | |||||||| || ||||| | | | | | || ||
Sbjct 577 TTTCTCTACACTATCGTCCTTTCTTTCATCTCAGGGACTATGA-CCGCCG-A-TATTTTT 633
Query 642 GT-T--TCTTTTGGCAACCGTAGCCCTAATATTGATCAACATG-GTCTTAGCTCCATGGC 697
| | | ||| || |||| || |||| ||||| || | | |||||||| ||||||
Sbjct 634 ATCTACACATTT-GCCACCGGAGTTATAATCTTGATTAATA-GATTCTTAGCTTCATGGC 691
Query 698 TTCCAAAGAGGAACCCTAAAGAGAAGTACCTCT-CAAAGGCTGAAAC-TTTAGTTTTCTT 755
| ||||| || |||||||||||||| || |||| |||| |||||||| || | ||||||
Sbjct 692 TCCCAAAAAGAAACCCTAAAGAGAAATATCTCTCCAAA-GCTGAAACGCTT-GCTTTCTT 749
Query 756 CATC-TTCCTTCTCATCATCG-GTATAACTATCGAATCCTA-CGA-TGTAAATTCCTCGG 811
|||| || |||| ||||||| || |||| || |||||| | | | | |||| ||| ||
Sbjct 750 CATCATT-ATTCTAATCATCGCGT-TAACCATTGAATCC-AGCAACT-TAAACTCCACGC 805
Query 812 TTTCTGT-TTTCGCCATTGGCA-TAATGTTTCC-ACGACAAGGAAAGACTCACAGAACGT 868
||| ||| ||| ||| || | |||||||||| | || ||||||| ||| ||||||||
Sbjct 806 TTTTTGTGTTT-TTCATCGG-ATTAATGTTTCCGA-GAGAAGGAAAAACTTACAGAACGA 862
Query 869 TGATACAACGGCTT-AGTTACCCGATTCACGAGTTTGTTCTTCCGGTTTACTTTGGTTAC 927
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGATCCAACGG-TTGAGTTACCCGATTCACGAGTTTGTTCTTCCGGTTTACTTTGGTTAC 921
Query 928 ATTGGATTCAGATTCAGCAT-CATCGCGTTAACCAAACGCTTTTACCTCGGT-ATAGTTA 985
|| || || ||||| ||| | || |||||||||||||| |||||| || | | ||
Sbjct 922 ATCGGGTTTAGATTTAGCGTGAAT-TCGTTAACCAAACGCCACTACCTC-GTCCTTGCTA 979
Query 986 TTATC-GT-GATTGTAA-CCATAGCT-GGGAAATTTATTGGTGTAATAAGCGCTTG-T-A 1039
| | | || | || ||| || || || ||||| || | || || || ||||||| | |
Sbjct 980 TGA-CAGTGGCTT-TAAGCC-TA-CTGGGGAAGCTTCTAGGAGTTTTATGCGCTTGTTCA 1035
Query 1040 TGTACCTGAAGATCCCTAAGAAATATTGGCTTTTCTTACCCACCATTCTCTCTGTTAAAG 1099
| | ||| |||||||| ||||| |||||||||||||| | || || || || || ||||
Sbjct 1036 T-T-CCTAAAGATCCCAAAGAAGTATTGGCTTTTCTTGTCAACTATGCTTTCCGTCAAAG 1093
Query 1100 GCCATGTCGGTCTTCTTCTTCTAGACTCCAAC-T-ATTCCGAAAAGAAATGGTGGACCAC 1157
| ||| | |||||| ||||||| ||||| ||| | ||| | |||||||||| | | |
Sbjct 1094 GTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATT--TACAAGAAATGGTTTA-CTC 1150
Query 1158 AACTA-TTCATGATATGATGGTGGCTGCTTTGGTGATAACGACGCTAG-TAAGTGGTGTT 1215
|| ||||||||||| | || || ||| | ||||| | ||| | | |||| || |||
Sbjct 1151 CGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGAC-TTTGTTAAGCGGAGTT 1209
Query 1216 CTGGCATCTTTCTTGCTTA-A-AACAAGAGAGAAGGACTTT-GCTTACGA-GAAGACTTC 1271
|| | ||||| ||||||| | ||||| | || || ||| || || | || || ||
Sbjct 1210 ATGACGTCTTTGTTGCTTAGAGTGCAAGA-A-AA-GAGTTTCGCACAC-ATAAAAACATC 1265
Query 1272 GCTTGAGTCTCATAACACGAACGAGGAATTACGCA-T-TTTATCGTGCGCCTATGGAGTC 1329
||||||| | | |||| || ||||| ||||| | | || | |||||| |||||| ||
Sbjct 1266 ACTTGAGTTTTTTGACACTAAAGAGGAGTTACG-AGTGTTGA-CGTGCGTCTATGGTGTT 1323
Query 1330 CGTCATGCTCGCGG-TGCGATCTCTCTT-GTCTCGGCCT-TGAGCGG--T-TCTCGTGGA 1383
||||||||||| || | | |||||| || ||||| | || | || || | |||| ||||
Sbjct 1324 CGTCATGCTCGTGGAT-CAATCTCT-TTAGTCTCTG-CTCTAAGTGGCTTCTCTCCTGGA 1380
Query 1384 GC--C-TCTGATCCGTTTACACC-TCTGCTTATGCACCTTGTACCCCTCCCCAAGAAAC- 1438
|| | ||| ||||| || || | | ||||||||||| |||| ||||| ||||| |
Sbjct 1381 GCTTCTTCTTCGCCGTTCACGCCTTAT-CTTATGCACCTCATACCGCTCCCGAAGAAGCG 1439
Query 1439 GAAAATCGGAACTGATGTATCATG-AGCACGACGAAGATGGAGGCAATGCGAA---TGGA 1494
||||| ||||| || |||| || | | | |||||||||||||| ||| | || ||||
Sbjct 1440 GAAAA-CGGAATTGTTGTACCACGAATTA-GACGAAGATGGAGGAAATTCCAACGGTGGA 1497
Query 1495 GATGACGAATTCGGGACCAACGAAGGTTTAGAGATCAACGATTCGATTGATTCGTTTGCT 1554
|| || || |||||||| || ||||| |||||||||| || ||||| ||||||||| ||
Sbjct 1498 GACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACT 1557
Query 1555 AAAGACAGCAAAATCTTGATCCAACAAGTGAAGCTCGTGACTCAGATGCTTAATATGCAC 1614
|||||||| |||||| |||||| |||||||| |||||| | | |||| | |||||||
Sbjct 1558 AAAGACAGAAAAATCATGATCCGGCAAGTGAAACTCGTGGCACCGATGGAGACTATGCAC 1617
Query 1615 GAAGAGATCTGTAACGCAACAGAGGATCTTCGAGTTTCCATTGTATTTCTTCCGTTTCAT 1674
||||||||||||||||| || || |||||||| || || ||||| |||||||| ||||||
Sbjct 1618 GAAGAGATCTGTAACGCGACTGAAGATCTTCGCGTCTCGATTGTGTTTCTTCCCTTTCAT 1677
Query 1675 AAACACCAGAGAATCGATGGGAAGACTACAAACGATGGGGAA-CTGTTCAGACAGATGAA 1733
||||||||||| ||||| ||||| || || || || |||||| | ||| |||| |||||
Sbjct 1678 AAACACCAGAGGATCGACGGGAAAACCACCAATGACGGGGAAGTTTTTC-GACATATGAA 1736
Query 1734 CCGTAATGTTCTAAGGCACGGTCCGTGTTCCATTGGCATTTTTGTGGACCGTAACATAAC 1793
||| || ||||||| ||| | || |||||| || || || ||||| || | ||||||||
Sbjct 1737 CCGGAAGGTTCTAAAGCAAGCTCAGTGTTCGATAGGTATCTTTGTTGATAGAAACATAAC 1796
Query 1794 CGGATTTCAGCAGCCGCACGGGTTTGATTCTGTACAACACGTCGCGACATTGTTCTTTGG 1853
||| ||||| |||| ||||| | |||||| ||||||||||| ||| | |||||||| ||
Sbjct 1797 CGGGTTTCACCAGCTTCACGGCTCTGATTCGGTACAACACGTTGCGGCGTTGTTCTTCGG 1856
Query 1854 TGGTCCGGATGATCGTGAGGCTCT-TGCTCTGTGC-AGATGGCTCGCGAATAA-TACTCT 1910
|||||| ||||| ||||||||||| | || ||||| || ||||| | ||||| | |||
Sbjct 1857 TGGTCCTGATGACCGTGAGGCTCTGTCCT-TGTGCAAG-TGGCTTACCAATAACT-CTCA 1913
Query 1911 GATTCATCTCACAGTTATACAGTTTGTCTCCGAGGAATCAAAG--GCAGAGACTCCTGTT 1968
|||||| ||||| || ||||||||||| |||| || |||||| | ||| ||| ||||
Sbjct 1914 GATTCACCTCACTGTAATACAGTTTGTGGCCGATGACTCAAAGATGGAGAAACT--TGTT 1971
Query 1969 GGAAATGCTATGA-CACGAGATAATAATGAGGTTTTCATGGAAG-TT-CTGGGAAGGAAT 2025
|| | || ||| || | || || || || || ||| ||| || || | | || | ||
Sbjct 1972 GGTGACGCGGTGACCAAG-GAAAACAACGAAGTATTCTTGG-AGATTGTTAGTAAAG-AT 2028
Query 2026 CAAACTGAACAAGAAACAGATCGGAGCTTCTTAGAAGAATTCTATAACAGATTTGTAACA 2085
||||| ||| | ||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 2029 CAAACCGAAGACGAAACAGATCGAATCTTCTTAGAAGAATTCTATAACAGATTTGTGACG 2088
Query 2086 ACGGGACAAGTGGGGTTCATAGAGAAGCTAGTGAGCAATGGACCGCATACGCTGACTATT 2145
||||| ||||| || ||||||||||||| ||||||||| ||| ||| |||||||| |||
Sbjct 2089 ACGGGGCAAGTTGGATTCATAGAGAAGCGAGTGAGCAACGGAGTGCAGACGCTGACAATT 2148
Query 2146 CTAAGAGAGATTGGAGAGATGTATTCACTGTTTGTGGTCGGAAAGAGCACAGGAGATTGC 2205
|| |||||||| || ||||||||||||||||||||||| ||||| | || |||||||||
Sbjct 2149 CTGAGAGAGATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGT 2208
Query 2206 CCTATGACGGTGA-GAATGAAAGATTGGGAAGAGTGTCCGGAGCTT-GGAACTGTCGGTG 2263
|| ||||| | | ||||||| |||||||||||||||||||| || ||||| ||||| |
Sbjct 2209 CCAATGAC-TTCAGGAATGAACGATTGGGAAGAGTGTCCGGA-ATTAGGAACAGTCGGAG 2266
Query 2264 ATTTCTTGGCTTCGTC---TTTAGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACAGA 2320
||||||||||||| || | | ||||||||||||||||||||||||||||||||||| |
Sbjct 2267 ATTTCTTGGCTTCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATA 2326
Query 2321 GACATTCACATGATAGCTTTATAGATGATTAG 2352
|| | ||| |||||||||| |||||||||||
Sbjct 2327 GAAACTCATTTGATAGCTTTGTAGATGATTAG 2358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5