BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79410.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1 2610 0.0
Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1 625 4e-178
> Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1
Length=1750
Score = 2610 bits (1413), Expect = 0.0
Identities = 1628/1731 (94%), Gaps = 18/1731 (1%)
Strand=Plus/Plus
Query 37 AAAGTAAGCAACCATGGCGGATTCGTTGGCACCATTGTTGCCCACCCACATTGAAGAAGA 96
||||||||||||||||| ||||||||||||||||| |||| || ||||| ||||||||||
Sbjct 25 AAAGTAAGCAACCATGGTGGATTCGTTGGCACCATCGTTGACCGCCCACCTTGAAGAAGA 84
Query 97 TGAAGACA-CTTCTTCA-CCTCTGACTTTCGACAAGATCCTCGAGA-AAAGCTTGTCTGA 153
|||||||| | |||| | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 85 TGAAGACAGC-TCTT-AGCCTCTGACTTTCGACAAGATCCTCGA-ACAAAGCTTGTCTGA 141
Query 154 TTTCGGATTCTCGCAGTTCTTACAGATAGTTCTCGTTGGGCTCGCGCTAACCTTTGACTC 213
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 142 TTTTGGATTCTCGCAGTTCTTACAGATAGTTCTCGTTGGGCTCGCTCTAACCTTTGACGC 201
Query 214 TCAGCAGATATTCATCACCGTCTTCACAGATGCATATCCCACGTGGCACTGTCTTGACCA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 202 ACAGCAGATATTCATCACCGTCTTCACAGATGCATATCCCACGTGGCACTGTCTCGACCA 261
Query 274 CACGATCTGCAATCCGGCAACTACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGATTG 333
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 262 CACGATCTGCAATCCGGCAACGACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGAGTG 321
Query 334 GGACGGTGGTTTCAAAGGTAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCCAGCTC 393
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 GGACGGTGGTTTCAAGGGTAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCAAGCTC 381
Query 394 CTTCCTCAGAAGTCTACCTAGTTCAACTTTTTATGTGGGTTCTATCGTTGGTGGAGTCGT 453
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 382 CTTCCGCAGAAGTCTACCAAGTTCAACTTTTTATGTGGGTTCTATCGTTGGAGGAGTCGT 441
Query 454 TTTGGCTATGATCCCTGACGGTTCCTTGGGACGGAAGCAACTTCtttttttCTCGAGTTT 513
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 CTTGGCTCTGATCCCTGACGGTTCCTTGGGACGGAAGCAACTTCTTTTCTTCTCGAGTTT 501
Query 514 CGCAATGTCACTCACTGGAATCTCTATTTTCTTATCCTCCAACATATGGATCTACTCCTT 573
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 502 TGCAATGTCCCTCACTGGAATCTCCATTTTCTTATCCTCCAACATATGGATCTACTCTTT 561
Query 574 CTTAAAGTTTGTGATCGGATTCGCGCGTTCTCAGACCGGGACATACGCGTTAGTTCTGAT 633
|||||| || |||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 562 CTTAAAATTCGTGATCGGTTTCGCCCGTTCCCAGACTGGGACATACGCGTTAGTTCTGAT 621
Query 634 AAGTGAGCGAATTTCCACCAAATGGAGACCGCGAGCTACTATGGTTCCGTTTACTCTGTT 693
|||||||||| || ||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 622 AAGTGAGCGAGTTCCCACCAAATTGAGACCACGAGCTACTATGATTCCGTTTACTCTGTT 681
Query 694 TGTGTTAGGGTTCATGTCGT-TGTCTGGAATCGCTTACCTTGTCCGACACGCTTCTTGGA 752
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||
Sbjct 682 TGTGTTAGGGTTCATGTC-TCTGTCTGGAATCGCTTACCTTGTCCGGCACGCTTCCTGGA 740
Query 753 AAGTTCTCTATCTATGCACATCCATTCCTGCAGGAATCCACAGTATTTTCATCTATTTCT 812
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 741 AAATTCTCTATCTATGCACATCCGTTCCTGCAGGAATCCACAGTATTTTCATCTATTTCT 800
Query 813 TTGCCCTAGAGTCACCGCGTTGGCTCCATTTGGAAGGGAAGAACAAAGAAGCCATTGAAG 872
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 801 TTGCCCTAGAGTCCCCGCGTTGGCTCCATTTGGAAGGTAAGAACGAAGAAGCCATTGAAG 860
Query 873 TGCTCAAACGGATTTCACCTGCAAATAGAGGTTACTTGGAATCCGTATCTTCGAGGTTAC 932
|||||||| |||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 861 TGCTCAAAAGGATTTCACCTGCAAACAAAGGTTACTTGGAATCCGTATCTTCTAGGTTAC 920
Query 933 GTCCAAAAGAAACACTAGAGCAAACTTCAAGCTACTCAATCAAAGACTTGTTCATTATAA 992
|||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||
Sbjct 921 CTCCAAAAGAAACACTAGACCAAACTTCAAGCTACTCCATCAAGGACTTATTCATTAGAA 980
Query 993 AATGGGCTTTTCGAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCGT 1052
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 981 AATGGGCTTTTCAAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCCT 1040
Query 1053 ATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATATGAGCGAAGCCC 1112
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1041 ATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATTTGAGCGAAGCCC 1100
Query 1113 TAAACGCCATGGTGGAGTTACCAACATTTGTTGTTACACCGATCTTGCTCGAGCAATTCA 1172
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1101 TAAACGCCATGGTGGAGTTACCAACATTTGTTGTTACACCGATATTGCTCGAGAAATTCA 1160
Query 1173 GCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTCTGTT 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTCTGTT 1220
Query 1233 TCGTAATGAGCCTTTACGGAAGAACAAAAATCGCTTTTGCTCTCGAACTCGGTTCTTTCT 1292
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1221 TCGCCATGAGCCTTTACGGGAGAACAAAAATCGCTTTCGCTCTCGAACTCGGTTCTTTCT 1280
Query 1293 TCTGCGCTAGGATTGGATTCAATTTAATGGCGATTTATTTGGTTGAGTTATTTCCTACAT 1352
||| |||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||
Sbjct 1281 TCTTCGCTAGGATTGGATTCAATTTAATGGCGGTTTATATGGTTGAGCTATTCCCTACAT 1340
Query 1353 GCGTGAGGAATAGTGCAACAATGATGCTTAGACAAGCGCTTGTGGTTGGAGGAGCTTGTT 1412
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GCGTGAGGAATAGCGCAACAATGATGCTTAGACAAGCGCTTGTGGTTGGAGGAGCTTGTT 1400
Query 1413 GCCCACTCATTGCTTCGCTTGGAAGAAATGTGCCGTCACTCTCTTTTGCAGTTTTCGGAT 1472
||||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||
Sbjct 1401 GCCCACTCATTGCTTCGCTTGGAAGAAATATTCCGTCACTCTCTTTCGCGGTTTTCGGAT 1460
Query 1473 TTGCAATGTCGGGTCTCGGGTTATTCGCTTTGCTTCTTCCTGAGACCAAAGGGTTAAGTC 1532
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1461 TTGCAATGTCGGGTCTCGGGTTATTCGCGCTGCTTCTTCCTGAGACCAAAGGGTCAAGTC 1520
Query 1533 TTTGTGATACAATGGAAGAGCAAGAGCAAAGAGACCAAGCCTTGAAGACTAGCCATAGTT 1592
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1521 TTTGTGATACAATGGAAGAACAAGAGCAAAGAGACCAAGCCTTGAAGACTAGCCAAAGTT 1580
Query 1593 GCTGAAAGCAGAGTTTTTTGAAAAACCTCTGTTCTTTTATTGAACTTTCGTATAAAACC- 1651
| ||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1581 GATGAAAACAGAGTTTTT-GAAAAACCTCGGTTCTTTTATTAAACTTTCGTATAAAACCA 1639
Query 1652 T---CTGTTTAGCTCCGGTTAATCAAGCCATATGTTGATTTTCCGAGTAATTAATATGCG 1708
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1640 TTTACTGTTAAGCTCCGGTTAATCAAGCCATATGTTGATTTTCCGAGTAATTAATATGTG 1699
Query 1709 AAACCTACAATGGCATGTATT---TT-TT-ATAAACTGAACCATTTCATTT 1754
|||||||||| ||||||| || || || ||||||||||||||||| |||
Sbjct 1700 AAACCTACAAAGGCATGTCTTGAATTCTTGATAAACTGAACCATTTCGTTT 1750
> Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1
Length=1657
Score = 625 bits (338), Expect = 4e-178
Identities = 886/1146 (77%), Gaps = 55/1146 (5%)
Strand=Plus/Plus
Query 117 TGACTTTCGACAAGATCCTCGAGA-AAAGCT-TGTCTGATTTCGGATTCTCGCAGTTCTT 174
||||||||||||||||| |||| | | || | | || ||||||||||||| ||| || ||
Sbjct 85 TGACTTTCGACAAGATCGTCGA-ACAGAG-TCTATCAGATTTCGGATTCTGGCAATTTTT 142
Query 175 ACAGATAGT-TCTCGTTGGGCTCGCGCTAAC-CTTTGACT-CTCAGCAGATATTCATCAC 231
|||||| | || ||||| ||||| | | ||| || | |||||||||||||||||||
Sbjct 143 CCAGATA-TCCCTGGTTGGACTCGC-TTTGCTCTTCGA-TGCTCAGCAGATATTCATCAC 199
Query 232 CGTCTTCACAGATGCATATCCCACGTGGCACTGTCTTGACCACACGATCTGCAATCCGGC 291
||| | ||||||||| ||||||||||||||||||||| |||||||||| || |||| |
Sbjct 200 CGTGTACACAGATGCTTATCCCACGTGGCACTGTCTTAACCACACGATTTGTGATCCTTC 259
Query 292 AACTACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGATTGGGACGGTGGTTTCAAAGG 351
| || |||| ||||| || |||| | ||||||||||| ||||||||||| | ||| ||
Sbjct 260 AGCTTCCGACATCTGCAATCTTCCAAGATCAGCTTGGGAATGGGACGGTGGATCCAAGGG 319
Query 352 TAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCCAGCTCCTTCCTCAGAAGTCTACC 411
||||| |||||||| || |||| ||||||||||| || || || |||||| || | ||
Sbjct 320 CAAATCCGTCATTTCTGAATTCGGCCTCGAGTGCTCGAGGTCTTTACTCAGAGGTATGCC 379
Query 412 TAGTTCAACTTTTTATGTGGGTTCTATCGTTGGTGGAGTCGTTT-TGGCTATGATCCCTG 470
|||||| |||| || | ||| | || ||||| || || ||| | ||| ||||||| |
Sbjct 380 TAGTTCCGCTTTCTACATCGGTGCCATTGTTGGAGG-GTTTTTTCTAGCTTTGATCCCAG 438
Query 471 ACGGTTCCTTGGGACGGAAGCAACTTCtttttttCTCGA-GTTTCGCAATGTCACTCACT 529
||| ||||||||| || ||| |||| || | ||||| | ||| ||||||||| |||||
Sbjct 439 ACGATTCCTTGGGTCGCAAGAAACTAGTTGTGTTCTCAACCTTT-GCAATGTCAATCACT 497
Query 530 GGAATCTCTATTTTCTTATCCTCCAACATATGGATCTACT-CCTTCTTAAAGTTTGTGAT 588
||||| | || |||| || |||| |||||||| || | | ||| |||||||| | ||
Sbjct 498 TCAATCTGTGTTATCTTCTCAACCAATATATGGATTTA-TACATTCCTAAAGTTTTTCAT 556
Query 589 CGGATTCGCGCGTTCTCAGACCGGGACATACGCGTTAGTTCTGATAAGTGAGCGAATTTC 648
| |||| |||| || |||||| || |||||||||| ||||| || ||||||||| | ||
Sbjct 557 CAGATTTTCGCGATCACAGACCTGGTCATACGCGTTGGTTCTCATCAGTGAGCGAGTCTC 616
Query 649 CACCAAATGGAGACCGCGAGCTACTATGGTTCCGTTTACTCTGTTTGTGTTAGGGTTCAT 708
||||| ||||||||| ||||||| ||| |||| ||||| || ||||| |||||||| ||
Sbjct 617 CACCAGATGGAGACCTAGAGCTACAATGATTCCATTTACCCTATTTGTTTTAGGGTTTAT 676
Query 709 GTCGTTGTCTGGAATCGCTTACCTTG-TCCGACACGCTTCTTGGAAAGT-TCTCTATCTA 766
|||||||||||||||||||||||||| || | | |||| |||| | | ||||||||||
Sbjct 677 GTCGTTGTCTGGAATCGCTTACCTTGCTCA-AGATTCTTCATGGAGA-TATCTCTATCTA 734
Query 767 TGCACATCCATTCCTGCAGGA-ATCC-ACAGTATTTTCATCTATTTCTTTGCCCTAGAGT 824
| |||||| |||| || | | || || |||| ||| |||| ||||||| || || |
Sbjct 735 TACACATCTGTTCCAGC-G-ATATTTTACTGTATCTTCCTCTACCTCTTTGCACTCGAAT 792
Query 825 CACCGCGTTGGCTCCATTTGGAAGGGAA-GAACAAAGAAGCCATTGAAGTGCTCA-AACG 882
|||| || ||||| || || |||| || || |||||||||||||| || |||| || |
Sbjct 793 CACCTCGGTGGCTTCACATGCAAGGAAATGAT-AAAGAAGCCATTGATGTTCTCACAAAG 851
Query 883 GATTTCACCTGCA-AATAGAGGTTACTTGGAATCCGTA-TCTTCGAGGTTACGTCCA--A 938
|| || || | | || | || ||| |||||||| || | ||| | ||||| ||| |
Sbjct 852 -ATGTCGCC-GAAGAACAAAGCTTATTTGGAATCAGTGGT-TTCTAAGTTACC-CCACGA 907
Query 939 --AAGAAACACTA-GAGCAAACTTC-AAGCT-ACTCAATCAAAGACTTGTTCATTAT-AA 992
|||||| ||| || ||| | | || || |||| || || ||||| ||| || ||
Sbjct 908 GCAAGAAA-ACTTTGAACAAG-TGCCAA-CTTACTCTATTAAGGACTTCTTC-TTCCGAA 963
Query 993 AATGGGCTTTTC-GAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCG 1051
|||||||||||| || || | | ||||||||||||||||||||||||||||||| |||
Sbjct 964 AATGGGCTTTTCAGAGGATTTT-AGTTGTTATGATCATAATGTTTGGGTTGGGAATATCG 1022
Query 1052 TATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTA-TATGAGCGAAGC 1110
||||| || ||||| ||||| | |||||||||| | || ||||| || | |||| ||| |
Sbjct 1023 TATTACGGTGTTCCTTTAGCAGCTAGAGACATAGACGTCAACATCTACT-TGAGTGAAAC 1081
Query 1111 CCTAAACGCCAT-GGTGGAGTTACCAACATTT-GTTGTTACACCGATCTTGCTCGAGCA- 1167
|||||| || || ||||||| | || || ||| || | || || ||||| | ||| |
Sbjct 1082 CCTAAATGC-ATTGGTGGAGCTGCCTAC-TTTCGTCATCACTCCAATCTTATTGGAG-AG 1138
Query 1168 ATTCAGCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCT 1227
||||| ||| ||||||||||| || || ||| |||| |||| || ||||| ||||||||
Sbjct 1139 ATTCAACAGAAGAAGCTCTGTTCTAGTGAATACCTTACTTGGTGGGGCATCGGGAGTGCT 1198
Query 1228 CTGTTT 1233
||||||
Sbjct 1199 CTGTTT 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5