BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79420.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909573 jgi|Araly1|909573|Al_scaffold_0002_2654 1496 0.0
> Ahg909573 jgi|Araly1|909573|Al_scaffold_0002_2654
Length=1224
Score = 1496 bits (810), Expect = 0.0
Identities = 870/900 (97%), Gaps = 0/900 (0%)
Strand=Plus/Plus
Query 434 GAGACGTCGACAGCGCATTATATAATACAACAATACTTAGCGGCGACGGGATGTCTAAAG 493
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 325 GAGACGTCGACAGCGCATTATATAATACAGCAATACTTAGCGGCAACGGGATGTCTAAAG 384
Query 494 CGAGCGAAGGCGGCGAAAAACATGTACGCGACGGGGATAATGAAAATGAGTTGCTGTGAG 553
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGAGCGAAAGCGGCGAAGAACATGTACGCGACGGGGATAATGAAAATGAGTTGCTGTGAG 444
Query 554 ACGGAGATAGCCGCCGGAAAAAGTGTGAAGACACTAGGCGGTGGTGGAAACGGTAGGAGC 613
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 445 ACGGAGATCGCCGCCGGAAAAAGCGTGAAGACACTAGGCGGTGGTGGAAACGGTAGGAGC 504
Query 614 GGAGATAGTGGTTGCTTCGTGCTGTGGCAGATGCAGCCTGGAATGTGGTCTCTGGAGCTT 673
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 505 GGAGATAGTGGTTGCTTCGTGTTGTGGCAGATGCAGCCTGGAATGTGGTCTCTCGAACTT 564
Query 674 GTTCTCGGTGGAACTAAACTCATCTCTGGCTCGGACGGTAAAACAGTTTGGCGCCATACG 733
||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 565 GTTCTCGGTGGCACTAAACTCATCTCCGGCTCCGACGGTAAAACCGTTTGGCGCCATACG 624
Query 734 CCATGGCTCGGTACTCACGCCGCTAAAGGCCCTCAACGTCCACTTCGTCGTCTAATCCAG 793
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 625 CCATGGCTCGGTACTCACGCCGCTAAAGGCCCTCAACGTCCACTTCGCCGTCTAATCCAG 684
Query 794 GGCTTGGACCCAAAAACCACAGCAAGCCTATTCGCAAAGGCCCAATGCTTAGGCGAACGA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGCTTGGACCCAAAAACCACAGCAAGCCTATTCGCAAAGGCCCAATGCTTAGGCGAACGA 744
Query 854 AGAATCGGCGACGATGACTGTTTCGTGCTCAAAGTCTCCGCCGATCGTGACTCGTTGTTA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 745 AGAATCGGCGACGATGACTGTTTCGTGCTCAAAGTCTCCGCCGATCGTGACTCCTTGTTA 804
Query 914 GAACGGAATGACGCCGGAGCTCCGGCGGAGGTTATACGCCACGCACTGTACGGATACTTC 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 805 GAACGGAATGACGCCGGAGCTCCGGCGGAGGTTATACGCCACGCACTGTACGGATATTTC 864
Query 974 TGTCAGAAAAGCGGTCTATTAGTCTATTTAGAGGATTCGCACCTCACTAGGGTTATGACG 1033
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 865 TGTCAGAAAAGCGGTCTCTTAGTCTATTTAGAGGATTCACACCTCACTAGGGTTATGACG 924
Query 1034 ATCTCGCCTGAGGACGAGGCGGTTTACTGGGAGACGACGATCGGAACAAGCATCGGAGAT 1093
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 925 ATCTCGCCTGAGGACGAGGCGGTTTACTGGGAGACGACAATCGGAACTAGCATCGGAGAT 984
Query 1094 TACCGTGACGTTGACGGAGTAGCCGTCGCGCATTGTGGTCGTGCCGTCGCGACGGTGTTC 1153
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 985 TACCGTGATGTTGACGGAGTAGCCGTCGCGCATTGTGGTCGCGCCGTCGCGACGGTGTTT 1044
Query 1154 CGATTTGGGGAGACGTCGTTGCAGTATAGCAGAACGAGGATGGAGGAGATTTGGAGGATA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 CGATTTGGGGAGACGTCGTTGCAGTATAGCAGAACGAGGATGGAGGAGATTTGGAGGATA 1104
Query 1214 GACGACGTCGTTTTCGATGTGCCTGGTCTCTCTTTGGACTCCTTTATTCCTCCCGCCGAT 1273
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1105 GACGACGTCGTTTTCGATGTGCCTGGCCTCTCTTTGGACTCCTTTATTCCTCCCGCCGAT 1164
Query 1274 ATATTTGAAGATACTAACCCTAACAATAATAATATTTACAGTATTGTTAATTCCCGATGA 1333
|| |||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||
Sbjct 1165 ATTTTTGAAGATACTAACCCTAATAATAATAATATTTACAGCAATGTCAATTCCCGATGA 1224
Score = 551 bits (298), Expect = 6e-156
Identities = 317/326 (97%), Gaps = 1/326 (0%)
Strand=Plus/Plus
Query 80 ATGAGCAACTCAAAGTCATACTGGAGAAAGCAAAGATGGGGAACGCCGCCACAAGCCCTA 139
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAGCAACTCAAAATCATACTGGAGAAAGCAAAGATGGGGAACGCCGCCGCAAGCCCTA 60
Query 140 ACACCGTTAATGGAAGGACCAGATCCAGACATGCAAGACGAAAGAACCAAGAAGGAGAGC 199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACCGTTAATGGAAGGGCCAGATCCAGACATGCAAGACGAAAGAACCAAGAAGGAGAGC 120
Query 200 TCATGGGAAGCAATTAGAGAATGGTTTAAGGTTCATAAGGGCATTTCTGGAAATATGTCA 259
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATGGGAAGCGATTAGAGAATGGTTTAAGGTTCATAAGGGCATTTCTGGAAATATGTCA 180
Query 260 TCTCCTTCGGTCCAACCACTTTGCAACAGCTATGACGTGCCAGCTAAGGGACAAGACTTG 319
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 TCTCCTTCGGTCCAACCACTTTGCAACAGCTATGACGTGCCGGCAAAGGGACAAGACTTG 240
Query 320 AGGCTCTTGCTCGGCGTCTTGGGTTGTCCTCTTGCTCCAATCTCCGTTGTCGTCTCTGAC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGGCTCTTGCTCGGCGTCTTGGGTTGTCCTCTTGCTCCAATCTCCGTTGTCGTCTATGAC 300
Query 380 CTATTTCCCGATGACCCTCTTCTTGG 405
||||| |||||||||||||||||||
Sbjct 301 -TATTTTCCGATGACCCTCTTCTTGG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5