BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79450.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477112 jgi|Araly1|477112|fgenesh2_kg.2__2242__AT1G79450.1 1681 0.0
Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1 846 0.0
> Ahg477112 jgi|Araly1|477112|fgenesh2_kg.2__2242__AT1G79450.1
Length=1236
Score = 1681 bits (910), Expect = 0.0
Identities = 999/1043 (96%), Gaps = 2/1043 (0%)
Strand=Plus/Plus
Query 160 TTCCACCGTCGGAGGAGGCGGATCGTCTGAGATTTCCGGTGTCaaaaaaaCCTCCAAGCG 219
||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||
Sbjct 56 TTCCACCGTCGGAGGAGGCGGATCGGCTGAGCCTTCCGGTGTCAAGAAAACCTCTAAGCG 115
Query 220 ACCAAAATATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 279
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ACCAAAATATTCTAAGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 175
Query 280 AAGATGGGTGATCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 339
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 AAGATGGGTGATCTTGACATTTCTAGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 235
Query 340 CTGCTTATTTGCTTCTCAGGGAGTAGTCGAGATTGTTGATCGATATGACACAGACTGTAT 399
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
Sbjct 236 CTGCTTATTTGCTTCTCAGGGAGTCGTTGAGATTGTTTATCGATATGACACAGACTGCGT 295
Query 400 TCCAACATCTTCTAGAAACAACATGGTCGCTTACATACAGGGTGAAGGAGATAAGATCTG 459
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 296 TCCACCATCTTCTAGAAACAACATGGTCGCTTACATACAAGGTGAAGGAGATAAGATATG 355
Query 460 TAAGAGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACT 519
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 TAACAGAACAATAGCGGTGACAAAACCTATGAAGCATCCTGTCTATGTATACTACCAACT 415
Query 520 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 475
Query 580 AAGTCCAAAAGAAGAGC-ATGATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 638
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AAGTCCAAGCGAAGAGCGA-GATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 534
Query 639 AACCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTATAGCTTTT 698
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 535 AACCAATTGTTCCATGTGGTCTTGTTGCTTGGAGTTTGTTTAACGATACTTATAGCTTTT 594
Query 699 CAAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAG 758
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 595 CAAGAAATAGCCAACAACTTCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGACAGAG 654
Query 759 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 655 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGACAGGAGCGCCAATAGGCG 714
Query 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GTGGAACTCTCAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGA 774
Query 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 775 GAACCGCGGCTTTGCCAACATTTAGGAAGCTGTATGGGAAGATTGAGACGGACCTACACG 834
Query 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 894
Query 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 895 AGAAGAAGCTAGTGCTATCAACAACTAGCTGGCTCGGTGGAAGGAACGATTTCCTCGGGA 954
Query 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATTTGCCGTATTGT 1118
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 955 TTGCTTATCTAACAGTAGGCAGCATTTGCTTGTTCTTGGCTGTTACATTTGCCGTACTGT 1014
Query 1119 ATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTTTCGTGGAACAGAAGTGCTG 1178
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1015 ATCTAGTTAAGCCAAGGCAACTCGGAGATCCGTCGTACCTTTCGTGGAACAGAAGTGCTG 1074
Query 1179 GAGGTTTACAGTAATAGAGCCCT 1201
|||||||||| ||||||| ||||
Sbjct 1075 GAGGTTTACAATAATAGATCCCT 1097
Score = 111 bits (60), Expect = 1e-23
Identities = 84/95 (88%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 1302 TTTGATATTGTTGAAAACAAACGTTTGTGTTTTGTCCTGTTGTTGTTAAGATACTAGCCA 1361
|||||||| ||||||||| || ||| | ||||||| || |||||||||||||| ||||
Sbjct 1146 TTTGATATCGTTGAAAAC-AA--TTT-TTTTTTGTCATGGCGTTGTTAAGATACTGGCCA 1201
Query 1362 GTAAATGGTGTTTAGAAAATAATGTAAATGAATTA 1396
||||||||||||||||||||||||||||| |||||
Sbjct 1202 GTAAATGGTGTTTAGAAAATAATGTAAATCAATTA 1236
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1218 GATCCCTCCATCGTCAAACGGCGTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1272
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1091 GATCCCTCCATCGTCAAACGGCTTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1145
> Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1
Length=1123
Score = 846 bits (458), Expect = 0.0
Identities = 801/967 (83%), Gaps = 22/967 (2%)
Strand=Plus/Plus
Query 228 ATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCCAAGATGGG 287
|||| || ||||| || || ||||||||||| ||||| || ||||||||||||| |||||
Sbjct 35 ATTCAAGATTTACCCAACAGGAGCTTCCAGCATGCAAACCCATTCTTACTCCAAAATGGG 94
Query 288 TGA-TCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGATCTGCTTA 346
||| || |||| ||||||||| | ||||||||||| ||||| ||||||||||| ||| ||
Sbjct 95 TGATTC-TGACTTTTCTTGTCTCAGGGGTTGTCTTTATTCCTCTTGGAGTGATTTGCCTA 153
Query 347 TTTGCTTCTCAGGGAGT-AGTCGAGATTGTTGATCGATATGACACAGACTGTATTCCAAC 405
|||||||||||||| || | |||| |||||| |||||||||||| |||||| ||||||
Sbjct 154 TTTGCTTCTCAGGGTGTCA-TCGAAATTGTTTATCGATATGACATAGACTGCATTCCATT 212
Query 406 ATCTTCTAGAAACAACATGGTC-GCTTACATACAGGG-TGAAGGAGATAAGATCTGTAAG 463
||| ||||| |||||| ||| | ||||||||||| | || |||||||| |||||
Sbjct 213 ATCCTCTAGGGACAACAAAGTCAG-ATACATACAGGGCT-TAGAAGATAAGAGGTGTAAC 270
Query 464 AGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACTTGAG 523
|||||||||| |||||||||| |||||||| |||| || |||||||| ||||| ||||||
Sbjct 271 AGAACAATAATGGTGACAAAAACTATGAAGAATCCGGTGTATGTATATTACCAGCTTGAG 330
Query 524 AA-TTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGA-AACGATGCACAACTAAGAA 581
|| | | |||||||||||| |||||||||||||||||||| || |||| |||| | ||||
Sbjct 331 AACTAT-TACCAAAACCATCGACGGTATGTGAAAAGTCGACAA-GATGGACAATTGAGAA 388
Query 582 GTCCAAAAGAAGAGCATGATGTGAAGA-CCTGTGCACCTGAGGATAATGTGGGTGGAGAA 640
|||| ||||| ||||| |||||||| | | ||||| || ||||||| | | | ||| |||
Sbjct 389 GTCCGAAAGATGAGCACGATGTGAA-ATCATGTGCGCCCGAGGATACTATAGATGGTGAA 447
Query 641 CCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTAT-AGCTTTTC 699
|| ||||| || ||||||||||||||||||||||||||||| ||||||||| | ||| |
Sbjct 448 CCCATTGTTCCTTGTGGTCTTGTTGCTTGGAGTTTGTTCAATGATACTTATGA-CTTCAC 506
Query 700 AAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAGA 759
||||| | ||| |||| | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 507 TAGAAACAATCAAAAACTCCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGATAGAGA 566
Query 760 AAACAA-GTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818
| ||| |||||| |||||||||||||| |||||||| ||||||||| | || || ||||
Sbjct 567 AT-CAAAGTTTGGTAAAAATGTCTTCCCGAAAAATTTCCAGAAAGGATCTCCCATCGGCG 625
Query 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878
|| || |||| || | | || || ||||| |||||||| || || ||||||||||
Sbjct 626 GTAAAAGTCTTGATCCTGATGTTCCATTAAGTGAACAAGAAGATCTAATTGTCTGGATGC 685
Query 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938
|||| |||||| | ||||| ||||| |||||||| || || || || || || || || |
Sbjct 686 GAACTGCGGCTCTACCAACATTTAGAAAGCTGTACGGTAAAATAGATACTGATCTTCAAG 745
Query 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998
| || ||||| |||| ||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 746 CCGGAGATACGATAAAGGTCTTGTTACAGAACAATTACAACACTTATAGCTTCAATGGAA 805
Query 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058
|||||||||| ||||| || || |||||||||||||| ||||||||||||||||| ||||
Sbjct 806 AGAAGAAGCTTGTGCTCTCTACCACTAGCTGGCTCGGTGGAAGGAATGATTTCCTTGGGA 865
Query 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATT-TGCCGTATTG 1117
|||| ||| ||||||| || || || |||||||||||||||||| | || | | || |||
Sbjct 866 TTGCGTATTTGACTGTTGGTAGCATATGCTTGTTCTTGGCTGTTTCCTTCT-CTGTCTTG 924
Query 1118 TATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTT-TCGTGGAACAGAAGTGC 1176
||||||| || ||||||||| | ||||| || |||||| || || ||||||||||||||
Sbjct 925 TATCTAGCAAAACCAAGGCAATTGGGAGATCCATCGTAC-TTGTCATGGAACAGAAGTGC 983
Query 1177 TGGAGGT 1183
|||||||
Sbjct 984 TGGAGGT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5