BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79450.1 Length=1433 Score E Sequences producing significant alignments: (Bits) Value Ahg477112 jgi|Araly1|477112|fgenesh2_kg.2__2242__AT1G79450.1 1681 0.0 Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1 846 0.0 > Ahg477112 jgi|Araly1|477112|fgenesh2_kg.2__2242__AT1G79450.1 Length=1236 Score = 1681 bits (910), Expect = 0.0 Identities = 999/1043 (96%), Gaps = 2/1043 (0%) Strand=Plus/Plus Query 160 TTCCACCGTCGGAGGAGGCGGATCGTCTGAGATTTCCGGTGTCaaaaaaaCCTCCAAGCG 219 ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||| Sbjct 56 TTCCACCGTCGGAGGAGGCGGATCGGCTGAGCCTTCCGGTGTCAAGAAAACCTCTAAGCG 115 Query 220 ACCAAAATATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 279 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 ACCAAAATATTCTAAGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 175 Query 280 AAGATGGGTGATCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 339 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 176 AAGATGGGTGATCTTGACATTTCTAGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 235 Query 340 CTGCTTATTTGCTTCTCAGGGAGTAGTCGAGATTGTTGATCGATATGACACAGACTGTAT 399 |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| | Sbjct 236 CTGCTTATTTGCTTCTCAGGGAGTCGTTGAGATTGTTTATCGATATGACACAGACTGCGT 295 Query 400 TCCAACATCTTCTAGAAACAACATGGTCGCTTACATACAGGGTGAAGGAGATAAGATCTG 459 |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 296 TCCACCATCTTCTAGAAACAACATGGTCGCTTACATACAAGGTGAAGGAGATAAGATATG 355 Query 460 TAAGAGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACT 519 ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 356 TAACAGAACAATAGCGGTGACAAAACCTATGAAGCATCCTGTCTATGTATACTACCAACT 415 Query 520 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 475 Query 580 AAGTCCAAAAGAAGAGC-ATGATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 638 |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 476 AAGTCCAAGCGAAGAGCGA-GATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 534 Query 639 AACCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTATAGCTTTT 698 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 535 AACCAATTGTTCCATGTGGTCTTGTTGCTTGGAGTTTGTTTAACGATACTTATAGCTTTT 594 Query 699 CAAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAG 758 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 595 CAAGAAATAGCCAACAACTTCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGACAGAG 654 Query 759 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 655 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGACAGGAGCGCCAATAGGCG 714 Query 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 GTGGAACTCTCAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGA 774 Query 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 775 GAACCGCGGCTTTGCCAACATTTAGGAAGCTGTATGGGAAGATTGAGACGGACCTACACG 834 Query 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 CAGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 894 Query 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058 |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 895 AGAAGAAGCTAGTGCTATCAACAACTAGCTGGCTCGGTGGAAGGAACGATTTCCTCGGGA 954 Query 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATTTGCCGTATTGT 1118 |||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 955 TTGCTTATCTAACAGTAGGCAGCATTTGCTTGTTCTTGGCTGTTACATTTGCCGTACTGT 1014 Query 1119 ATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTTTCGTGGAACAGAAGTGCTG 1178 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1015 ATCTAGTTAAGCCAAGGCAACTCGGAGATCCGTCGTACCTTTCGTGGAACAGAAGTGCTG 1074 Query 1179 GAGGTTTACAGTAATAGAGCCCT 1201 |||||||||| ||||||| |||| Sbjct 1075 GAGGTTTACAATAATAGATCCCT 1097 Score = 111 bits (60), Expect = 1e-23 Identities = 84/95 (88%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 1302 TTTGATATTGTTGAAAACAAACGTTTGTGTTTTGTCCTGTTGTTGTTAAGATACTAGCCA 1361 |||||||| ||||||||| || ||| | ||||||| || |||||||||||||| |||| Sbjct 1146 TTTGATATCGTTGAAAAC-AA--TTT-TTTTTTGTCATGGCGTTGTTAAGATACTGGCCA 1201 Query 1362 GTAAATGGTGTTTAGAAAATAATGTAAATGAATTA 1396 ||||||||||||||||||||||||||||| ||||| Sbjct 1202 GTAAATGGTGTTTAGAAAATAATGTAAATCAATTA 1236 Score = 97.1 bits (52), Expect = 3e-19 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1218 GATCCCTCCATCGTCAAACGGCGTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1272 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1091 GATCCCTCCATCGTCAAACGGCTTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1145 > Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1 Length=1123 Score = 846 bits (458), Expect = 0.0 Identities = 801/967 (83%), Gaps = 22/967 (2%) Strand=Plus/Plus Query 228 ATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCCAAGATGGG 287 |||| || ||||| || || ||||||||||| ||||| || ||||||||||||| ||||| Sbjct 35 ATTCAAGATTTACCCAACAGGAGCTTCCAGCATGCAAACCCATTCTTACTCCAAAATGGG 94 Query 288 TGA-TCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGATCTGCTTA 346 ||| || |||| ||||||||| | ||||||||||| ||||| ||||||||||| ||| || Sbjct 95 TGATTC-TGACTTTTCTTGTCTCAGGGGTTGTCTTTATTCCTCTTGGAGTGATTTGCCTA 153 Query 347 TTTGCTTCTCAGGGAGT-AGTCGAGATTGTTGATCGATATGACACAGACTGTATTCCAAC 405 |||||||||||||| || | |||| |||||| |||||||||||| |||||| |||||| Sbjct 154 TTTGCTTCTCAGGGTGTCA-TCGAAATTGTTTATCGATATGACATAGACTGCATTCCATT 212 Query 406 ATCTTCTAGAAACAACATGGTC-GCTTACATACAGGG-TGAAGGAGATAAGATCTGTAAG 463 ||| ||||| |||||| ||| | ||||||||||| | || |||||||| ||||| Sbjct 213 ATCCTCTAGGGACAACAAAGTCAG-ATACATACAGGGCT-TAGAAGATAAGAGGTGTAAC 270 Query 464 AGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACTTGAG 523 |||||||||| |||||||||| |||||||| |||| || |||||||| ||||| |||||| Sbjct 271 AGAACAATAATGGTGACAAAAACTATGAAGAATCCGGTGTATGTATATTACCAGCTTGAG 330 Query 524 AA-TTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGA-AACGATGCACAACTAAGAA 581 || | | |||||||||||| |||||||||||||||||||| || |||| |||| | |||| Sbjct 331 AACTAT-TACCAAAACCATCGACGGTATGTGAAAAGTCGACAA-GATGGACAATTGAGAA 388 Query 582 GTCCAAAAGAAGAGCATGATGTGAAGA-CCTGTGCACCTGAGGATAATGTGGGTGGAGAA 640 |||| ||||| ||||| |||||||| | | ||||| || ||||||| | | | ||| ||| Sbjct 389 GTCCGAAAGATGAGCACGATGTGAA-ATCATGTGCGCCCGAGGATACTATAGATGGTGAA 447 Query 641 CCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTAT-AGCTTTTC 699 || ||||| || ||||||||||||||||||||||||||||| ||||||||| | ||| | Sbjct 448 CCCATTGTTCCTTGTGGTCTTGTTGCTTGGAGTTTGTTCAATGATACTTATGA-CTTCAC 506 Query 700 AAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAGA 759 ||||| | ||| |||| | ||||||||||||||| ||||||||||||||||| ||||| Sbjct 507 TAGAAACAATCAAAAACTCCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGATAGAGA 566 Query 760 AAACAA-GTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818 | ||| |||||| |||||||||||||| |||||||| ||||||||| | || || |||| Sbjct 567 AT-CAAAGTTTGGTAAAAATGTCTTCCCGAAAAATTTCCAGAAAGGATCTCCCATCGGCG 625 Query 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878 || || |||| || | | || || ||||| |||||||| || || |||||||||| Sbjct 626 GTAAAAGTCTTGATCCTGATGTTCCATTAAGTGAACAAGAAGATCTAATTGTCTGGATGC 685 Query 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938 |||| |||||| | ||||| ||||| |||||||| || || || || || || || || | Sbjct 686 GAACTGCGGCTCTACCAACATTTAGAAAGCTGTACGGTAAAATAGATACTGATCTTCAAG 745 Query 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998 | || ||||| |||| ||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 746 CCGGAGATACGATAAAGGTCTTGTTACAGAACAATTACAACACTTATAGCTTCAATGGAA 805 Query 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058 |||||||||| ||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct 806 AGAAGAAGCTTGTGCTCTCTACCACTAGCTGGCTCGGTGGAAGGAATGATTTCCTTGGGA 865 Query 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATT-TGCCGTATTG 1117 |||| ||| ||||||| || || || |||||||||||||||||| | || | | || ||| Sbjct 866 TTGCGTATTTGACTGTTGGTAGCATATGCTTGTTCTTGGCTGTTTCCTTCT-CTGTCTTG 924 Query 1118 TATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTT-TCGTGGAACAGAAGTGC 1176 ||||||| || ||||||||| | ||||| || |||||| || || |||||||||||||| Sbjct 925 TATCTAGCAAAACCAAGGCAATTGGGAGATCCATCGTAC-TTGTCATGGAACAGAAGTGC 983 Query 1177 TGGAGGT 1183 ||||||| Sbjct 984 TGGAGGT 990 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53592974715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5