BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79470.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1 2560 0.0
Ahg920538 jgi|Araly1|920538|scaffold_101819.1 1240 0.0
> Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1
Length=1627
Score = 2560 bits (1386), Expect = 0.0
Identities = 1544/1621 (95%), Gaps = 8/1621 (0%)
Strand=Plus/Plus
Query 224 CAAAAACCCTTCCGCTTAAACCCTAATTCACTTCGCCGGCCATGTCGACACTCGAGGATG 283
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 9 CAAAAACCCTTCCGCTTAAACCCTAATTCACTTCGCCGGCCATGTCGAGATTCGAGGACG 68
Query 284 GATTTCCGGCGGATAAGCTCTTCGCTCAAGGATACTCTTACACCTACGACGACGTCATCT 343
| ||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 69 GCTTTGCTGCGGATAAGCTCTTCGCTCAGGGATACTCCTACACTTACGACGACGTCATCT 128
Query 344 TTCTTCCTCACTTCATCGATTTCTCCACAGACGCTGTTTCTCTATCCACGCGCCTTAGCC 403
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TTCTTCCTCACTACATTGATTTCTCCACAGACGCTGTTTCTCTATCCACGCGCCTTAGCC 188
Query 404 GGCGCGTGCCTCTCTCCATACCTTGCGTTTCGTCTCCGATGGATACTGTTTCGGAATCTC 463
|||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 189 GGCGCGTGCCTCTCTCGATACCCTGCGTTTCGTCTCCGATGGACACTGTCTCGGAGTCTC 248
Query 464 ACATGGCTGCTGCTATGGCTTCTCTTGGTGGGATTGGAATCGTCCACTATAACTGTGGCA 523
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||
Sbjct 249 ACATGGCTGCTGCTATGGCTGCCCTTGGTGGGATTGGAATCGTGCACTATAACTGTGACA 308
Query 524 TCGCCGCTCAAGCATCGATTATTCGCCAAGCTAAGTCGCTTAAACATCCGATTGCTTCCG 583
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 309 TCGCCGCTCAGGCATCGATTATTCGCCAAGCCAAGTCGCTCAAACATCCGATTGCTTCCG 368
Query 584 ACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTCTTTAGATGCTTTTGGTCCTTCTT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTCTTTAGATGCTTTTGGTCCTTCTT 428
Query 644 CCTTCGTTTTTGTCGA-GCAAACAGGAACAATGACGACTCCTAAATTGTTAGGCTATGTA 702
| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 429 CATTCGTTTTTGTC-ACGCAAACAGGAACAATGACGACTCCGAAATTGTTAGGCTATGTA 487
Query 703 ACGAAATCGCAGTGGAAGAGAATGAATTACGAACAAAGGGAGATGAAGATATACGATTAC 762
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCGAAATCGCAGTGGACGAGAATGAATTACGAACAAAGGGAGATGAAGATATACGATTAC 547
Query 763 ATGAAGAGCTGTGATAGCAGTGACTATTGTGTACCATGGGAAATTGATTTTGAAAAGTTG 822
|||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||| |||
Sbjct 548 ATGAAGAGCTGTGATAGCAGCGACTATTGTTTACCATGGGACATTGATCTTGAAAAATTG 607
Query 823 GAGTTTGTTTTAGAAGATAAGCAAAAGGGCTTTGTGGTTCTTGAGAGGGATGGTGAGACT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GAGTTTGTTTTAGAAGATAAGCAAAAGGGCTTTGTGGTTCTTGAGAGGGATGGTGAGACT 667
Query 883 GTGAACGTGGTGACGAAA-GATGATATACAGAGGGTTAAAGGATATCCCAAGTCTGGACC 941
|||||||||||||| ||| || |||||| ||||||||||||||||||||||||| |||||
Sbjct 668 GTGAACGTGGTGAC-AAAGGACGATATAGAGAGGGTTAAAGGATATCCCAAGTCAGGACC 726
Query 942 AGGGACTGTGGGCCCAGACGGTGAGTGGATGGTTGGTGCAGCGATAGGTACGAGGGAGTC 1001
|||||| ||||| || ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 727 AGGGACCGTGGGTCCTGACGGTGAGTGGATGGTTGGTGCAGCGATTGGGACGAGGGAATC 786
Query 1002 TGATAAGGAGAGGCTTGAGCATTTGGTTAATGTTGGGGTCAATGCTGTAGTGTTGGATAG 1061
||||||||||||||| |||||||||||| ||| |||||||||||| || |||||||||||
Sbjct 787 TGATAAGGAGAGGCTGGAGCATTTGGTTGATGCTGGGGTCAATGCCGTTGTGTTGGATAG 846
Query 1062 TTCGCAAGGGAACTCTATTTACCAGCTTGAGATGATCAAGTATGTGAAAAAGACTTACCC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 847 TTCGCAAGGGAACTCTATTTACCAGCTTGAGATGATCAAGTATGTGAAAAATACTTACCC 906
Query 1122 TGAATTGGATGTGATTGGTGGCAATGTTGTGACAATGTACCAGGCACAGAATTTGATCCA 1181
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TCAATTGGATGTCATTGGTGGCAATGTTGTGACAATGTACCAGGCACAGAATTTGATCCA 966
Query 1182 AGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGTTCGATATGTACCACACAAGA 1241
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 967 AGCAGGAGTTGATGGGTTGAGAGTCGGTATGGGATCTGGTTCGATATGTACCACTCAAGA 1026
Query 1242 GGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGGTTTGTTCGATCGCTGC 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1027 GGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGGTTTGTTCGATCGCCGC 1086
Query 1302 TCAGAGCGGGATTCCAGTTATAGCGGATGGTGGTATCTCAAATTCAGGGCACATTGTAAA 1361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1087 TCAGAGCGGGATTCCAGTTATAGCGGATGGTGGTATCTCAAATTCAGGTCACATTGTAAA 1146
Query 1362 GGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCTTTTTAGCTGGAAGTACTGA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCTTTTTAGCTGGAAGTACTGA 1206
Query 1422 GGCTCCCGGGGGTTACGAGTATACGAACGGTAAGAGGATCAAGAAGTACCGTGGAATGGG 1481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1207 GGCTCCCGGGGGTTACGAGTATAAGAACGGTAAGAGGATCAAGAAGTACCGTGGAATGGG 1266
Query 1482 ATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGATACTTAGGAGATCAAACAAAACT 1541
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1267 ATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGATACTTGGGAGATAAAACAAAACT 1326
Query 1542 CAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGATAAAGGCTCAGTGTTGAAGCTGAT 1601
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1327 CAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGATAAAGGTTCAGTATTGAAGCTGAT 1386
Query 1602 ACCTTACACAATGCACGCCGTGAAACAAGGTTTCCAAGACCTTGGTGCTTCTTCCTTGCA 1661
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1387 ACCTTACACAATGCACGCCGTGAAACAAGGTTTCCAAGACCTCGGTGCTTCTTCCTTGCA 1446
Query 1662 ATCTGCTCATGGTCTGTTGAGATCAAACATCCTTAGGCTTGAGGCTCGAACTGGTGCTGC 1721
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1447 ATCTGCTCATGACCTGTTGAGATCAGACATCCTTAGGCTTGAGGCTCGAACTGGTGCAGC 1506
Query 1722 ACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCTTATGAAAAGAAATCGTTTTAAGCTTT 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 ACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCTTATGAAAAGAAATCGTTTTAAGCTTT 1566
Query 1782 GGCCTAAAATTGAG--TGCTA-A-GAGTGTTTCTTATATCATGTTCCATGTTATTTTTAT 1837
||| ||||||||| | | | ||||||||||||||| ||||||||||||||||||||
Sbjct 1567 CGCCAAAAATTGAGGATTTTTGACGAGTGTTTCTTATATTATGTTCCATGTTATTTTTAT 1626
Query 1838 A 1838
|
Sbjct 1627 A 1627
> Ahg920538 jgi|Araly1|920538|scaffold_101819.1
Length=1551
Score = 1240 bits (671), Expect = 0.0
Identities = 1244/1520 (82%), Gaps = 41/1520 (3%)
Strand=Plus/Plus
Query 275 TCGAGGATGGATTTCCGGCGGATAAGCTCTTCGCTCAAGGATACTCTTACACCTACGACG 334
|||| ||||||||| | || || ||||| ||| | || |||||||| |||||||||||||
Sbjct 33 TCGAAGATGGATTTTCAGCTGAAAAGCTATTCTCACAGGGATACTCATACACCTACGACG 92
Query 335 ACGTCATCTTTCTTCCTCACTTCATCGA-TTTCTCCACAGACGCTGTTTC-TCTATCCAC 392
| || |||||||| ||||||| |||||| ||| ||||| ||||| || || | |||||||
Sbjct 93 ATGTGATCTTTCTACCTCACTACATCGACTTT-TCCACGGACGCCGTCTCGT-TATCCAC 150
Query 393 GCGCCTTAGCCGGCGCGTGCCTCTCTCCATACCTTGCGTTTCGTCTCCGATGGATACTGT 452
|||||| ||| |||||| || ||||| || || ||||| | || |||||||| |||||
Sbjct 151 GCGCCTCAGCAAGCGCGTCCCACTCTCGATCCCATGCGTCGCTTCGCCGATGGACACTGT 210
Query 453 TTCGGAATCTCACATGGCTGCTGCTATGGCTTCTCTTGGTGGGATTGGAATCGTCCACTA 512
||| || || |||||||||||||| |||||| | ||||| || || |||||||| |||||
Sbjct 211 TTCTGAGTCCCACATGGCTGCTGCAATGGCTGCGCTTGGAGGAATCGGAATCGTGCACTA 270
Query 513 TAACTGTGGCATCGCCG-CTCAAGCAT-CGATTATTCGCCAAGCTAAGTCGCTTAAACAT 570
||| |||| ||||| | ||||||| | || | || || || || || |||||| || |
Sbjct 271 TAATTGTGACATCG-AGACTCAAGCTTCCG-TCATCCGTCACGCCAAATCGCTTCAAGTT 328
Query 571 CCGATTGCTTCCGACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTC-TTTAGATGC 629
|||||||| || || || | | | || | ||| ||| || ||||| ||| || ||||
Sbjct 329 CCGATTGCGTCTGATGCTGTTTTCAAATGCCCAGAGCATCAGATTGGTTCGGTT-GATGA 387
Query 630 TTTTGGTCCTTCTTCCTTCGTTTTTGTCGAGCAAACAGGAACAATGACGACTCCTAAATT 689
|||||||||||||||||||||||| ||| ||| ||||||||| |||| | || |||||
Sbjct 388 TTTTGGTCCTTCTTCCTTCGTTTTCGTCTCGCAGACAGGAACACTGAC-A--CCGAAATT 444
Query 690 GTTAGGCTATGTAACGAAATCGCAGTGGAAGAGAATGAATTACGAACAAAGGGAGATGAA 749
||| || ||||| | |||||| ||||| ||| ||||| | || |||| |||||||||
Sbjct 445 GTTGGGTTATGTCTCAAAATCGGAGTGGTCGAGTATGAAAGATGACCAAAAGGAGATGAA 504
Query 750 GATATACGATTACATGAAGAGCTGTGATAGCAGTGACTATTGTGTACCATGGGAAATTGA 809
|||||| |||||||||| ||| ||||| |||| || || | ||| |||||||| |||||
Sbjct 505 GATATATGATTACATGAGGAGTTGTGAGAGCAAAGATTACTATGTGCCATGGGATATTGA 564
Query 810 TTTTGAAAAGTTGGAGTTTGTTTTAGAAGATAAGCA-AAAGGGCTTTGTGGTTCTTGAGA 868
| |||| ||| | ||| ||||| ||||||||||| ||| || ||||||||||| ||||
Sbjct 565 TCTTGACAAGATCGAGGCGGTTTTGGAAGATAAGCAGAAA-GGATTTGTGGTTCTGGAGA 623
Query 869 GGGATGGTGAGACTGTGAACGTGGTGACGAAAGATGATATACAGAGGGTTAAAGGATATC 928
|||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||||
Sbjct 624 AGGATGGTGAGACCGTGAACGTAGTAACAAAAGACGATGTGGAGAGGGTTAAAGGATATC 683
Query 929 CCAAGTCTGGACCAGGGACTGTGGGCCCAGACGGTG-AGTGGATGGTTGGTGCAGCGATA 987
||||||| || |||| ||||| || ||||| | | |||||||| ||||| || |||
Sbjct 684 CCAAGTCAGGGTCAGGAACTGTTGGTGCAGAC-AAGAAATGGATGGTGGGTGCGGCTATA 742
Query 988 GGTACGAGGGAGTCTGATAAGGAGAGGCTTGAGCATTTGGTTAATGTTGG-GGTCAATGC 1046
|| || ||||| || || ||||||||||| |||||||| || || | ||| | | || |
Sbjct 743 GGGACAAGGGATTCAGACAAGGAGAGGCTAGAGCATTTAGTGAAAGCTGGAGCT-AACGT 801
Query 1047 TGTAGTGTTGGATAGTTCGCAAGGGAACTCTA-TTTACCAGCTTGAGATGATCAAGTATG 1105
||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 802 TGTGGTGCTGGATAGTTCGCAAGGGAACTC-AGTTTACCAGCTTGAGATGATCAAGTATG 860
Query 1106 TGAAAAAGACTTACCCTGAATTGGATGTGATTGGTGGCAATGTTGTGACAATGTACCAGG 1165
|||| || || || || || ||||||||| | ||||| ||||| ||||| ||||||||||
Sbjct 861 TGAAGAATACGTATCCGGAGTTGGATGTGGTCGGTGGGAATGTGGTGACTATGTACCAGG 920
Query 1166 CACAGAATTTGATCCAAGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGTTCGA 1225
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 921 CAGAGAACTTGATCAAAGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGATCGA 980
Query 1226 TATGTACCACACAAGAGGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGG 1285
|||| || ||||||||||||||||| ||||| || |||||||||||||| |||||||| |
Sbjct 981 TATGCACAACACAAGAGGTTTGTGCCGTTGGACGAGGACAGGCTACTGCCGTGTACAAAG 1040
Query 1286 TTT-GTTCGATCGCTGCTCAG-AGCGG-GATTCCAGTTATAGCGGATGGTGGTATCTCAA 1342
| | | || | ||||||||| | ||| | | || ||||| || ||||||||||||||||
Sbjct 1041 TCTCGA-CGCTAGCTGCTCAGCA-CGGTG-TACCTGTTATCGCAGATGGTGGTATCTCAA 1097
Query 1343 ATTCAGGGCACATTGTAAAGGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCT 1402
| ||||| |||||||| |||||||| || ||||||||||||||||| |||||||| || |
Sbjct 1098 ACTCAGGTCACATTGTGAAGGCTCTAGTTCTTGGAGCATCAACTGTGATGATGGGAAG-T 1156
Query 1403 TT-TTAGCTGGAAGTACTGAGGCTCCCGGGGG-TTACGAGTATACGAA-CGGTAAGAG-G 1458
|| ||||||||||| || |||||||| ||| | ||| || ||| |||| ||| | ||| |
Sbjct 1157 TTCTTAGCTGGAAGCACCGAGGCTCC-GGGAGCTTATGAATAT-CGAAACGGCAGGAGAG 1214
Query 1459 ATCAAGAAGTACCGTGGAATGGGATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGA 1518
| ||||| ||| | || ||||| || ||||||||||||| |||||||||||||| |||
Sbjct 1215 -TGAAGAAATACAGAGGTATGGGTTCTTTAGAAGCAATGACCAAAGGAAGTGACCAGAGA 1273
Query 1519 TACTTAGGAGAT-CAAACAAAACTCAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGA 1577
||||| |||||| | | |||||||||||||| |||||||| |||||||| || |||||
Sbjct 1274 TACTTGGGAGATACCG-CGAAACTCAAGATTGCACAAGGAGTCGTTGGAGCGGTTGCGGA 1332
Query 1578 TAAAGGCTCAGTGTTGAAGCTGATACCTTACACAATGCACGCCGTGAAACAAGGTTTCCA 1637
||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||| ||
Sbjct 1333 TAAAGGCTCAGTGTTGAAGTTTATACCTTACACAATGCATGCCGTGAAGCAAGGTTTTCA 1392
Query 1638 AGACCTTGGTGCTTCTTCCTTGCAATCTGCTCATG-GTCTGTTGAGATCA-AACATCCTT 1695
||| || ||||||||||| ||||| |||||||| | | || |||||| | || | ||||
Sbjct 1393 AGATCTCGGTGCTTCTTCTTTGCAGTCTGCTCACGAG-CTATTGAGAG-ATAATACCCTT 1450
Query 1696 AGGCTTGAGGCTCGAACTGGTGCTGCACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCT 1755
|| || |||||||| || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct 1451 AGACTCGAGGCTCGTACCGGTGCAGCACAGGTAGAAGGTGGAGTCCATGGACTGGTGTCT 1510
Query 1756 TATGAAAAGAAATCGTTTTA 1775
|| |||||||||||||||||
Sbjct 1511 TACGAAAAGAAATCGTTTTA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5