BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79470.1 Length=1950 Score E Sequences producing significant alignments: (Bits) Value Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1 2560 0.0 Ahg920538 jgi|Araly1|920538|scaffold_101819.1 1240 0.0 > Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1 Length=1627 Score = 2560 bits (1386), Expect = 0.0 Identities = 1544/1621 (95%), Gaps = 8/1621 (0%) Strand=Plus/Plus Query 224 CAAAAACCCTTCCGCTTAAACCCTAATTCACTTCGCCGGCCATGTCGACACTCGAGGATG 283 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 9 CAAAAACCCTTCCGCTTAAACCCTAATTCACTTCGCCGGCCATGTCGAGATTCGAGGACG 68 Query 284 GATTTCCGGCGGATAAGCTCTTCGCTCAAGGATACTCTTACACCTACGACGACGTCATCT 343 | ||| | |||||||||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 69 GCTTTGCTGCGGATAAGCTCTTCGCTCAGGGATACTCCTACACTTACGACGACGTCATCT 128 Query 344 TTCTTCCTCACTTCATCGATTTCTCCACAGACGCTGTTTCTCTATCCACGCGCCTTAGCC 403 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 TTCTTCCTCACTACATTGATTTCTCCACAGACGCTGTTTCTCTATCCACGCGCCTTAGCC 188 Query 404 GGCGCGTGCCTCTCTCCATACCTTGCGTTTCGTCTCCGATGGATACTGTTTCGGAATCTC 463 |||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||| Sbjct 189 GGCGCGTGCCTCTCTCGATACCCTGCGTTTCGTCTCCGATGGACACTGTCTCGGAGTCTC 248 Query 464 ACATGGCTGCTGCTATGGCTTCTCTTGGTGGGATTGGAATCGTCCACTATAACTGTGGCA 523 |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| || Sbjct 249 ACATGGCTGCTGCTATGGCTGCCCTTGGTGGGATTGGAATCGTGCACTATAACTGTGACA 308 Query 524 TCGCCGCTCAAGCATCGATTATTCGCCAAGCTAAGTCGCTTAAACATCCGATTGCTTCCG 583 |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 309 TCGCCGCTCAGGCATCGATTATTCGCCAAGCCAAGTCGCTCAAACATCCGATTGCTTCCG 368 Query 584 ACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTCTTTAGATGCTTTTGGTCCTTCTT 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 ACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTCTTTAGATGCTTTTGGTCCTTCTT 428 Query 644 CCTTCGTTTTTGTCGA-GCAAACAGGAACAATGACGACTCCTAAATTGTTAGGCTATGTA 702 | |||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| Sbjct 429 CATTCGTTTTTGTC-ACGCAAACAGGAACAATGACGACTCCGAAATTGTTAGGCTATGTA 487 Query 703 ACGAAATCGCAGTGGAAGAGAATGAATTACGAACAAAGGGAGATGAAGATATACGATTAC 762 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TCGAAATCGCAGTGGACGAGAATGAATTACGAACAAAGGGAGATGAAGATATACGATTAC 547 Query 763 ATGAAGAGCTGTGATAGCAGTGACTATTGTGTACCATGGGAAATTGATTTTGAAAAGTTG 822 |||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||| ||| Sbjct 548 ATGAAGAGCTGTGATAGCAGCGACTATTGTTTACCATGGGACATTGATCTTGAAAAATTG 607 Query 823 GAGTTTGTTTTAGAAGATAAGCAAAAGGGCTTTGTGGTTCTTGAGAGGGATGGTGAGACT 882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 GAGTTTGTTTTAGAAGATAAGCAAAAGGGCTTTGTGGTTCTTGAGAGGGATGGTGAGACT 667 Query 883 GTGAACGTGGTGACGAAA-GATGATATACAGAGGGTTAAAGGATATCCCAAGTCTGGACC 941 |||||||||||||| ||| || |||||| ||||||||||||||||||||||||| ||||| Sbjct 668 GTGAACGTGGTGAC-AAAGGACGATATAGAGAGGGTTAAAGGATATCCCAAGTCAGGACC 726 Query 942 AGGGACTGTGGGCCCAGACGGTGAGTGGATGGTTGGTGCAGCGATAGGTACGAGGGAGTC 1001 |||||| ||||| || ||||||||||||||||||||||||||||| || |||||||| || Sbjct 727 AGGGACCGTGGGTCCTGACGGTGAGTGGATGGTTGGTGCAGCGATTGGGACGAGGGAATC 786 Query 1002 TGATAAGGAGAGGCTTGAGCATTTGGTTAATGTTGGGGTCAATGCTGTAGTGTTGGATAG 1061 ||||||||||||||| |||||||||||| ||| |||||||||||| || ||||||||||| Sbjct 787 TGATAAGGAGAGGCTGGAGCATTTGGTTGATGCTGGGGTCAATGCCGTTGTGTTGGATAG 846 Query 1062 TTCGCAAGGGAACTCTATTTACCAGCTTGAGATGATCAAGTATGTGAAAAAGACTTACCC 1121 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 847 TTCGCAAGGGAACTCTATTTACCAGCTTGAGATGATCAAGTATGTGAAAAATACTTACCC 906 Query 1122 TGAATTGGATGTGATTGGTGGCAATGTTGTGACAATGTACCAGGCACAGAATTTGATCCA 1181 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 TCAATTGGATGTCATTGGTGGCAATGTTGTGACAATGTACCAGGCACAGAATTTGATCCA 966 Query 1182 AGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGTTCGATATGTACCACACAAGA 1241 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 967 AGCAGGAGTTGATGGGTTGAGAGTCGGTATGGGATCTGGTTCGATATGTACCACTCAAGA 1026 Query 1242 GGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGGTTTGTTCGATCGCTGC 1301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1027 GGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGGTTTGTTCGATCGCCGC 1086 Query 1302 TCAGAGCGGGATTCCAGTTATAGCGGATGGTGGTATCTCAAATTCAGGGCACATTGTAAA 1361 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1087 TCAGAGCGGGATTCCAGTTATAGCGGATGGTGGTATCTCAAATTCAGGTCACATTGTAAA 1146 Query 1362 GGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCTTTTTAGCTGGAAGTACTGA 1421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCTTTTTAGCTGGAAGTACTGA 1206 Query 1422 GGCTCCCGGGGGTTACGAGTATACGAACGGTAAGAGGATCAAGAAGTACCGTGGAATGGG 1481 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1207 GGCTCCCGGGGGTTACGAGTATAAGAACGGTAAGAGGATCAAGAAGTACCGTGGAATGGG 1266 Query 1482 ATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGATACTTAGGAGATCAAACAAAACT 1541 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1267 ATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGATACTTGGGAGATAAAACAAAACT 1326 Query 1542 CAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGATAAAGGCTCAGTGTTGAAGCTGAT 1601 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1327 CAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGATAAAGGTTCAGTATTGAAGCTGAT 1386 Query 1602 ACCTTACACAATGCACGCCGTGAAACAAGGTTTCCAAGACCTTGGTGCTTCTTCCTTGCA 1661 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1387 ACCTTACACAATGCACGCCGTGAAACAAGGTTTCCAAGACCTCGGTGCTTCTTCCTTGCA 1446 Query 1662 ATCTGCTCATGGTCTGTTGAGATCAAACATCCTTAGGCTTGAGGCTCGAACTGGTGCTGC 1721 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 1447 ATCTGCTCATGACCTGTTGAGATCAGACATCCTTAGGCTTGAGGCTCGAACTGGTGCAGC 1506 Query 1722 ACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCTTATGAAAAGAAATCGTTTTAAGCTTT 1781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1507 ACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCTTATGAAAAGAAATCGTTTTAAGCTTT 1566 Query 1782 GGCCTAAAATTGAG--TGCTA-A-GAGTGTTTCTTATATCATGTTCCATGTTATTTTTAT 1837 ||| ||||||||| | | | ||||||||||||||| |||||||||||||||||||| Sbjct 1567 CGCCAAAAATTGAGGATTTTTGACGAGTGTTTCTTATATTATGTTCCATGTTATTTTTAT 1626 Query 1838 A 1838 | Sbjct 1627 A 1627 > Ahg920538 jgi|Araly1|920538|scaffold_101819.1 Length=1551 Score = 1240 bits (671), Expect = 0.0 Identities = 1244/1520 (82%), Gaps = 41/1520 (3%) Strand=Plus/Plus Query 275 TCGAGGATGGATTTCCGGCGGATAAGCTCTTCGCTCAAGGATACTCTTACACCTACGACG 334 |||| ||||||||| | || || ||||| ||| | || |||||||| ||||||||||||| Sbjct 33 TCGAAGATGGATTTTCAGCTGAAAAGCTATTCTCACAGGGATACTCATACACCTACGACG 92 Query 335 ACGTCATCTTTCTTCCTCACTTCATCGA-TTTCTCCACAGACGCTGTTTC-TCTATCCAC 392 | || |||||||| ||||||| |||||| ||| ||||| ||||| || || | ||||||| Sbjct 93 ATGTGATCTTTCTACCTCACTACATCGACTTT-TCCACGGACGCCGTCTCGT-TATCCAC 150 Query 393 GCGCCTTAGCCGGCGCGTGCCTCTCTCCATACCTTGCGTTTCGTCTCCGATGGATACTGT 452 |||||| ||| |||||| || ||||| || || ||||| | || |||||||| ||||| Sbjct 151 GCGCCTCAGCAAGCGCGTCCCACTCTCGATCCCATGCGTCGCTTCGCCGATGGACACTGT 210 Query 453 TTCGGAATCTCACATGGCTGCTGCTATGGCTTCTCTTGGTGGGATTGGAATCGTCCACTA 512 ||| || || |||||||||||||| |||||| | ||||| || || |||||||| ||||| Sbjct 211 TTCTGAGTCCCACATGGCTGCTGCAATGGCTGCGCTTGGAGGAATCGGAATCGTGCACTA 270 Query 513 TAACTGTGGCATCGCCG-CTCAAGCAT-CGATTATTCGCCAAGCTAAGTCGCTTAAACAT 570 ||| |||| ||||| | ||||||| | || | || || || || || |||||| || | Sbjct 271 TAATTGTGACATCG-AGACTCAAGCTTCCG-TCATCCGTCACGCCAAATCGCTTCAAGTT 328 Query 571 CCGATTGCTTCCGACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTTC-TTTAGATGC 629 |||||||| || || || | | | || | ||| ||| || ||||| ||| || |||| Sbjct 329 CCGATTGCGTCTGATGCTGTTTTCAAATGCCCAGAGCATCAGATTGGTTCGGTT-GATGA 387 Query 630 TTTTGGTCCTTCTTCCTTCGTTTTTGTCGAGCAAACAGGAACAATGACGACTCCTAAATT 689 |||||||||||||||||||||||| ||| ||| ||||||||| |||| | || ||||| Sbjct 388 TTTTGGTCCTTCTTCCTTCGTTTTCGTCTCGCAGACAGGAACACTGAC-A--CCGAAATT 444 Query 690 GTTAGGCTATGTAACGAAATCGCAGTGGAAGAGAATGAATTACGAACAAAGGGAGATGAA 749 ||| || ||||| | |||||| ||||| ||| ||||| | || |||| ||||||||| Sbjct 445 GTTGGGTTATGTCTCAAAATCGGAGTGGTCGAGTATGAAAGATGACCAAAAGGAGATGAA 504 Query 750 GATATACGATTACATGAAGAGCTGTGATAGCAGTGACTATTGTGTACCATGGGAAATTGA 809 |||||| |||||||||| ||| ||||| |||| || || | ||| |||||||| ||||| Sbjct 505 GATATATGATTACATGAGGAGTTGTGAGAGCAAAGATTACTATGTGCCATGGGATATTGA 564 Query 810 TTTTGAAAAGTTGGAGTTTGTTTTAGAAGATAAGCA-AAAGGGCTTTGTGGTTCTTGAGA 868 | |||| ||| | ||| ||||| ||||||||||| ||| || ||||||||||| |||| Sbjct 565 TCTTGACAAGATCGAGGCGGTTTTGGAAGATAAGCAGAAA-GGATTTGTGGTTCTGGAGA 623 Query 869 GGGATGGTGAGACTGTGAACGTGGTGACGAAAGATGATATACAGAGGGTTAAAGGATATC 928 |||||||||||| |||||||| || || ||||| ||| | |||||||||||||||||| Sbjct 624 AGGATGGTGAGACCGTGAACGTAGTAACAAAAGACGATGTGGAGAGGGTTAAAGGATATC 683 Query 929 CCAAGTCTGGACCAGGGACTGTGGGCCCAGACGGTG-AGTGGATGGTTGGTGCAGCGATA 987 ||||||| || |||| ||||| || ||||| | | |||||||| ||||| || ||| Sbjct 684 CCAAGTCAGGGTCAGGAACTGTTGGTGCAGAC-AAGAAATGGATGGTGGGTGCGGCTATA 742 Query 988 GGTACGAGGGAGTCTGATAAGGAGAGGCTTGAGCATTTGGTTAATGTTGG-GGTCAATGC 1046 || || ||||| || || ||||||||||| |||||||| || || | ||| | | || | Sbjct 743 GGGACAAGGGATTCAGACAAGGAGAGGCTAGAGCATTTAGTGAAAGCTGGAGCT-AACGT 801 Query 1047 TGTAGTGTTGGATAGTTCGCAAGGGAACTCTA-TTTACCAGCTTGAGATGATCAAGTATG 1105 ||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 802 TGTGGTGCTGGATAGTTCGCAAGGGAACTC-AGTTTACCAGCTTGAGATGATCAAGTATG 860 Query 1106 TGAAAAAGACTTACCCTGAATTGGATGTGATTGGTGGCAATGTTGTGACAATGTACCAGG 1165 |||| || || || || || ||||||||| | ||||| ||||| ||||| |||||||||| Sbjct 861 TGAAGAATACGTATCCGGAGTTGGATGTGGTCGGTGGGAATGTGGTGACTATGTACCAGG 920 Query 1166 CACAGAATTTGATCCAAGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGTTCGA 1225 || |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 921 CAGAGAACTTGATCAAAGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGATCGA 980 Query 1226 TATGTACCACACAAGAGGTTTGTGCAGTTGGTCGTGGACAGGCTACTGCTGTGTACAAGG 1285 |||| || ||||||||||||||||| ||||| || |||||||||||||| |||||||| | Sbjct 981 TATGCACAACACAAGAGGTTTGTGCCGTTGGACGAGGACAGGCTACTGCCGTGTACAAAG 1040 Query 1286 TTT-GTTCGATCGCTGCTCAG-AGCGG-GATTCCAGTTATAGCGGATGGTGGTATCTCAA 1342 | | | || | ||||||||| | ||| | | || ||||| || |||||||||||||||| Sbjct 1041 TCTCGA-CGCTAGCTGCTCAGCA-CGGTG-TACCTGTTATCGCAGATGGTGGTATCTCAA 1097 Query 1343 ATTCAGGGCACATTGTAAAGGCTCTCGTCCTTGGAGCATCAACTGTTATGATGGGTAGCT 1402 | ||||| |||||||| |||||||| || ||||||||||||||||| |||||||| || | Sbjct 1098 ACTCAGGTCACATTGTGAAGGCTCTAGTTCTTGGAGCATCAACTGTGATGATGGGAAG-T 1156 Query 1403 TT-TTAGCTGGAAGTACTGAGGCTCCCGGGGG-TTACGAGTATACGAA-CGGTAAGAG-G 1458 || ||||||||||| || |||||||| ||| | ||| || ||| |||| ||| | ||| | Sbjct 1157 TTCTTAGCTGGAAGCACCGAGGCTCC-GGGAGCTTATGAATAT-CGAAACGGCAGGAGAG 1214 Query 1459 ATCAAGAAGTACCGTGGAATGGGATCGCTAGAAGCAATGACTAAAGGAAGTGACCAAAGA 1518 | ||||| ||| | || ||||| || ||||||||||||| |||||||||||||| ||| Sbjct 1215 -TGAAGAAATACAGAGGTATGGGTTCTTTAGAAGCAATGACCAAAGGAAGTGACCAGAGA 1273 Query 1519 TACTTAGGAGAT-CAAACAAAACTCAAGATTGCTCAAGGAGTGGTTGGAGCAGTCGCGGA 1577 ||||| |||||| | | |||||||||||||| |||||||| |||||||| || ||||| Sbjct 1274 TACTTGGGAGATACCG-CGAAACTCAAGATTGCACAAGGAGTCGTTGGAGCGGTTGCGGA 1332 Query 1578 TAAAGGCTCAGTGTTGAAGCTGATACCTTACACAATGCACGCCGTGAAACAAGGTTTCCA 1637 ||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||| || Sbjct 1333 TAAAGGCTCAGTGTTGAAGTTTATACCTTACACAATGCATGCCGTGAAGCAAGGTTTTCA 1392 Query 1638 AGACCTTGGTGCTTCTTCCTTGCAATCTGCTCATG-GTCTGTTGAGATCA-AACATCCTT 1695 ||| || ||||||||||| ||||| |||||||| | | || |||||| | || | |||| Sbjct 1393 AGATCTCGGTGCTTCTTCTTTGCAGTCTGCTCACGAG-CTATTGAGAG-ATAATACCCTT 1450 Query 1696 AGGCTTGAGGCTCGAACTGGTGCTGCACAGGTCGAAGGAGGAGTTCACGGGCTGGTTTCT 1755 || || |||||||| || ||||| |||||||| ||||| ||||| || || ||||| ||| Sbjct 1451 AGACTCGAGGCTCGTACCGGTGCAGCACAGGTAGAAGGTGGAGTCCATGGACTGGTGTCT 1510 Query 1756 TATGAAAAGAAATCGTTTTA 1775 || ||||||||||||||||| Sbjct 1511 TACGAAAAGAAATCGTTTTA 1530 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73285631380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5