BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79480.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477115 jgi|Araly1|477115|fgenesh2_kg.2__2245__AT1G79480.2 2228 0.0
> Ahg477115 jgi|Araly1|477115|fgenesh2_kg.2__2245__AT1G79480.2
Length=1653
Score = 2228 bits (1206), Expect = 0.0
Identities = 1541/1691 (91%), Gaps = 69/1691 (4%)
Strand=Plus/Plus
Query 50 AGTAAAGTGATCTTCTGTGACAACGAAAGTATGCAACTAAAGTGCGAATCTTTATGAGAA 109
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 AGTAAAGTGATCTTCTGTGACAACGAAAGTAACCAGCTAAAGTGCGAATCTTTATGAGAA 60
Query 110 ACAGAACCTTATATCCTTCCACAGGTTACCTTGCAAGGATTCTTTGAGGTTTTTGTTTTG 169
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 61 ACAGAACCTTATATCCTTCCACAGGTTGCCTTGCAAGGATTCTTTGAGTTTTTTGTTTTG 120
Query 170 GTTT-G----Tacacatgcacatgacacacacac-acaTACGCGATATATATA-A-AGAA 221
||| | |||||||||||| ||||| ||||| | ||| ||||||||| | ||||
Sbjct 121 TTTTGGCTTCTACACATGCACAAGACACCCACACAAGATA-TATATATATATATATAGAA 179
Query 222 CGAGAGAGCGAAGAGACAAATATTTAACCTATCTTGGTCCTGTTTCTTTGTCTTCTTACT 281
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 180 AGAGAGAGCGAAGAGACAAATATTTAAGCTATCTTGGTCCTATTTCTTTGTCTTCTTCCT 239
Query 282 CTTGAGAGTGTATAGCTAATTG--GTTTTA-TTTCTCTTTTGGTATTCATCTTAAAACCA 338
|||||||||| ||||||| || | |||| |||||||||||| |||||||||||||||
Sbjct 240 CTTGAGAGTG--TAGCTAA-TGAAGATTTAGCTTCTCTTTTGGTCTTCATCTTAAAACCA 296
Query 339 TGGAATCATATCGAGTCTTCACAACTATTTGTCTTCTTCTTTGTCTCTTTCTCTCAGCCA 398
||| |||| || ||| |||| |||| |||||||||||||||||| | |||||||| |||
Sbjct 297 TGGCATCAAATAGAGCCTTCGCAACCATTTGTCTTCTTCTTTGTGTAATTCTCTCAACCA 356
Query 399 ACTTCTTCACTCATTATGTAGTAGATGCAAGAAAAAGCGTGGGATTTGAGAGAGAGCCAA 458
||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 357 ACTTCTTGACTCATTGTGTAGTAGATGCAAGAAAAAGCGAGGGATTTGAGAGACAGCCAA 416
Query 459 AGAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTACAGAAAATGATGACAC 518
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 417 AGAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTAGAGAAAATGTTGACAC 476
Query 519 AGCTCAATCTTGCTCAGCCTTTAGACTACTCTTCATCCTCCAACACTCAACCTTATGGCG 578
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 AACTCAATCTTGCTCAGCCTTTAGACTATTCTTCATCCTCCAACACTCAACCTTATGGCG 536
Query 579 TTAGCACAACTCTCACTCTACCTCCTTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAA 638
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 TTAGCACCACTCTCACTCTACCTCCCTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAA 596
Query 639 ATGCCCCTCCTTTTTGCATTAATCCCCCAAATACTCCTCCTTCCTCCTCTTATCCTGGTC 698
||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 597 ATGCCCCTCCTTTCTGCGTTAATCCCCCACTTACTCCTCCTTCCACCTCTTATCCTGGTC 656
Query 699 TTAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGACTCCTCCTCTAACCCGA 758
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 TTAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGATTCCTCCTCTAACCCGA 716
Query 759 ACTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGATTCATCCTCTA 818
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 ACTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTA 776
Query 819 ATCCAAACTCAAACCCAAACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTA 878
|||||||||||||||| | | | | |||||||||||||||||||
Sbjct 777 ATCCAAACTCAAACCC--A---A------A------C----CCACCCGAATCATCCTCTA 815
Query 879 ACCCAAACCCACCTGATTCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCAT 938
||||||||||||| | || ||| | | ||| ||||||||||||||||||||||
Sbjct 816 ACCCAAACCCACC-G---GAT--TCT--T-C---CTCTAACCCAAACCCACCCGAATCAT 863
Query 939 CCTCTAACCCAAACCCACCCGTTACCGTCCCTAACCCACCCGAATCATCCTCTAACCCAA 998
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 864 CCTCTAATCCAAACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAA 923
Query 999 ACCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATTCCATACCCGCCTGAAT 1058
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 924 ACCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATCCCATACCCGCCTGAAT 983
Query 1059 CCTCCAGCCCAAACCCGCCAGAAATAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAG 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 984 CCTCCAGCCCAAACCCGCCAGAAACAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAG 1043
Query 1119 GGCCCGTTTTAGGCCCACCTTACTCTGAACCGGGCCCATCAACACCTACCGGATCAATTC 1178
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1044 GGCCTATTTTAGGCCCACCTTACTCTGAACCAGGCCCATCAACACCTACCGGATCAATTC 1103
Query 1179 CAAGTCCATCATCGGGGTTTCTTCCCCCAATCGTTTATCCGCCACCCATGGCACCACCGT 1238
|||||||||||||||||||||||||||| ||||| ||||| || || ||||| |||||||
Sbjct 1104 CAAGTCCATCATCGGGGTTTCTTCCCCCGATCGTCTATCCACCGCCTATGGCGCCACCGT 1163
Query 1239 CACCGAGCGTAACTCCGACGTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACC 1298
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CACCGAGCGTGACTCCGACCTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACC 1223
Query 1299 CAATTATTCAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTC 1358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 CAATTATACAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTC 1283
Query 1359 AGCCTAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTACA 1418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1284 AGCCCAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTTCA 1343
Query 1419 ATAGCTATTGGCAACGGACCAAAAGTACGGGTGGCTCGTGCACGTTCGGCGGCACTGGCA 1478
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||
Sbjct 1344 ATAGCTATTGGCAACGGACCAAAGGTACCGGTGGCTCGTGCACGTTCGGTGGCACCGGCA 1403
Query 1479 TGCTTGTCACCGTTGATCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATG- 1537
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TGCTTGTAACCGTTGACCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATGC 1463
Query 1538 A--A-GACGAAGACAGCTCTCACTTTACA--TTTTGTTGGATACGAATAATATCAAAGAA 1592
| | |||||||||| |||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1464 ATGAAGACGAAGACATCTCTCACTTTTCACCTTTTGTTGGATACGAATAATATCAAATAA 1523
Query 1593 ATCTAGATATAATATGTTTAGGTGGGTCGCTCACTTGTAAGTTGAAACCAATTAAAGCTT 1652
|| | ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1524 ATTTTGATATAATACGTT-AGGTGGGTCGCTCACTTGTAAGTTGTAACCAATTAAAGCTT 1582
Query 1653 AT---T-----T--C-TTGGGAATGGCATAATT-ATAAATCT--TATGCTAAATACGTAT 1698
|| | | | ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1583 ATAAATACAAATTTCCTTGGGAATGGCATAATTTATAAATGGGGTATGCTAAATACGTAT 1642
Query 1699 ATTGCTTTTGC 1709
|||||||||||
Sbjct 1643 ATTGCTTTTGC 1653
Score = 206 bits (111), Expect = 6e-52
Identities = 144/159 (91%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 853 CCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGATTCATCCTCTAATCCAAA 912
||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 724 CCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAA 783
Query 913 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCG-TTA--CCG-T-- 966
||||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 784 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAA 843
Query 967 CCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACC 1005
||| ||||||||||||||||||||||| |||||||||||
Sbjct 844 CCCAAACCCACCCGAATCATCCTCTAATCCAAACCCACC 882
Score = 180 bits (97), Expect = 4e-44
Identities = 167/198 (84%), Gaps = 15/198 (8%)
Strand=Plus/Plus
Query 731 AACCCACCCGACTCCTCCTCTAACCCGAACTCCAACCCCAACCCACCCGAATCATCCTCT 790
|||||||| || || |||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 755 AACCCACCTGAATCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCATCCTCT 814
Query 791 AACCCGAACCCACCTGATTCATCCTCTAATCC-AA---A--C---TCA------AACCCA 835
||||| |||||||| ||||| |||||||| || || | | ||| || |||
Sbjct 815 AACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCACCCGAATCATCCTCTAATCCA 874
Query 836 AACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGAT 895
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 875 AACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAG 934
Query 896 TCATCCTCTAATCCAAAC 913
||||||||||||||||||
Sbjct 935 TCATCCTCTAATCCAAAC 952
Score = 119 bits (64), Expect = 8e-26
Identities = 146/183 (80%), Gaps = 15/183 (8%)
Strand=Plus/Plus
Query 854 CCTAATCCACCCGAATCATCCTCTAACCCAAAC-CC-A-CCTGATTCATCCTCTAATCCA 910
||||| |||||||| || ||||||||||| ||| || | || | || || | ||| ||
Sbjct 686 CCTAACCCACCCGATTCCTCCTCTAACCCGAACTCCAACCCCAACCCA-CC-CGAAT-CA 742
Query 911 AACTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCGTTACCGTCCCT 970
||| ||||| |||||||| |||||||||||||| |||||| || | |||
Sbjct 743 TCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAACTCA------A---ACCCA 793
Query 971 AACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAGTCATCCTCTAATCCAAACCCA 1030
||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 794 AACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCA 853
Query 1031 CCC 1033
|||
Sbjct 854 CCC 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5