BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79480.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg477115 jgi|Araly1|477115|fgenesh2_kg.2__2245__AT1G79480.2 2228 0.0 > Ahg477115 jgi|Araly1|477115|fgenesh2_kg.2__2245__AT1G79480.2 Length=1653 Score = 2228 bits (1206), Expect = 0.0 Identities = 1541/1691 (91%), Gaps = 69/1691 (4%) Strand=Plus/Plus Query 50 AGTAAAGTGATCTTCTGTGACAACGAAAGTATGCAACTAAAGTGCGAATCTTTATGAGAA 109 ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1 AGTAAAGTGATCTTCTGTGACAACGAAAGTAACCAGCTAAAGTGCGAATCTTTATGAGAA 60 Query 110 ACAGAACCTTATATCCTTCCACAGGTTACCTTGCAAGGATTCTTTGAGGTTTTTGTTTTG 169 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 61 ACAGAACCTTATATCCTTCCACAGGTTGCCTTGCAAGGATTCTTTGAGTTTTTTGTTTTG 120 Query 170 GTTT-G----Tacacatgcacatgacacacacac-acaTACGCGATATATATA-A-AGAA 221 ||| | |||||||||||| ||||| ||||| | ||| ||||||||| | |||| Sbjct 121 TTTTGGCTTCTACACATGCACAAGACACCCACACAAGATA-TATATATATATATATAGAA 179 Query 222 CGAGAGAGCGAAGAGACAAATATTTAACCTATCTTGGTCCTGTTTCTTTGTCTTCTTACT 281 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || Sbjct 180 AGAGAGAGCGAAGAGACAAATATTTAAGCTATCTTGGTCCTATTTCTTTGTCTTCTTCCT 239 Query 282 CTTGAGAGTGTATAGCTAATTG--GTTTTA-TTTCTCTTTTGGTATTCATCTTAAAACCA 338 |||||||||| ||||||| || | |||| |||||||||||| ||||||||||||||| Sbjct 240 CTTGAGAGTG--TAGCTAA-TGAAGATTTAGCTTCTCTTTTGGTCTTCATCTTAAAACCA 296 Query 339 TGGAATCATATCGAGTCTTCACAACTATTTGTCTTCTTCTTTGTCTCTTTCTCTCAGCCA 398 ||| |||| || ||| |||| |||| |||||||||||||||||| | |||||||| ||| Sbjct 297 TGGCATCAAATAGAGCCTTCGCAACCATTTGTCTTCTTCTTTGTGTAATTCTCTCAACCA 356 Query 399 ACTTCTTCACTCATTATGTAGTAGATGCAAGAAAAAGCGTGGGATTTGAGAGAGAGCCAA 458 ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 357 ACTTCTTGACTCATTGTGTAGTAGATGCAAGAAAAAGCGAGGGATTTGAGAGACAGCCAA 416 Query 459 AGAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTACAGAAAATGATGACAC 518 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 417 AGAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTAGAGAAAATGTTGACAC 476 Query 519 AGCTCAATCTTGCTCAGCCTTTAGACTACTCTTCATCCTCCAACACTCAACCTTATGGCG 578 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 477 AACTCAATCTTGCTCAGCCTTTAGACTATTCTTCATCCTCCAACACTCAACCTTATGGCG 536 Query 579 TTAGCACAACTCTCACTCTACCTCCTTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAA 638 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 537 TTAGCACCACTCTCACTCTACCTCCCTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAA 596 Query 639 ATGCCCCTCCTTTTTGCATTAATCCCCCAAATACTCCTCCTTCCTCCTCTTATCCTGGTC 698 ||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct 597 ATGCCCCTCCTTTCTGCGTTAATCCCCCACTTACTCCTCCTTCCACCTCTTATCCTGGTC 656 Query 699 TTAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGACTCCTCCTCTAACCCGA 758 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 657 TTAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGATTCCTCCTCTAACCCGA 716 Query 759 ACTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGATTCATCCTCTA 818 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 717 ACTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTA 776 Query 819 ATCCAAACTCAAACCCAAACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTA 878 |||||||||||||||| | | | | ||||||||||||||||||| Sbjct 777 ATCCAAACTCAAACCC--A---A------A------C----CCACCCGAATCATCCTCTA 815 Query 879 ACCCAAACCCACCTGATTCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCAT 938 ||||||||||||| | || ||| | | ||| |||||||||||||||||||||| Sbjct 816 ACCCAAACCCACC-G---GAT--TCT--T-C---CTCTAACCCAAACCCACCCGAATCAT 863 Query 939 CCTCTAACCCAAACCCACCCGTTACCGTCCCTAACCCACCCGAATCATCCTCTAACCCAA 998 ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 864 CCTCTAATCCAAACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAA 923 Query 999 ACCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATTCCATACCCGCCTGAAT 1058 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 924 ACCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATCCCATACCCGCCTGAAT 983 Query 1059 CCTCCAGCCCAAACCCGCCAGAAATAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAG 1118 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 984 CCTCCAGCCCAAACCCGCCAGAAACAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAG 1043 Query 1119 GGCCCGTTTTAGGCCCACCTTACTCTGAACCGGGCCCATCAACACCTACCGGATCAATTC 1178 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1044 GGCCTATTTTAGGCCCACCTTACTCTGAACCAGGCCCATCAACACCTACCGGATCAATTC 1103 Query 1179 CAAGTCCATCATCGGGGTTTCTTCCCCCAATCGTTTATCCGCCACCCATGGCACCACCGT 1238 |||||||||||||||||||||||||||| ||||| ||||| || || ||||| ||||||| Sbjct 1104 CAAGTCCATCATCGGGGTTTCTTCCCCCGATCGTCTATCCACCGCCTATGGCGCCACCGT 1163 Query 1239 CACCGAGCGTAACTCCGACGTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACC 1298 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1164 CACCGAGCGTGACTCCGACCTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACC 1223 Query 1299 CAATTATTCAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTC 1358 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 CAATTATACAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTC 1283 Query 1359 AGCCTAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTACA 1418 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1284 AGCCCAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTTCA 1343 Query 1419 ATAGCTATTGGCAACGGACCAAAAGTACGGGTGGCTCGTGCACGTTCGGCGGCACTGGCA 1478 ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||| Sbjct 1344 ATAGCTATTGGCAACGGACCAAAGGTACCGGTGGCTCGTGCACGTTCGGTGGCACCGGCA 1403 Query 1479 TGCTTGTCACCGTTGATCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATG- 1537 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1404 TGCTTGTAACCGTTGACCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATGC 1463 Query 1538 A--A-GACGAAGACAGCTCTCACTTTACA--TTTTGTTGGATACGAATAATATCAAAGAA 1592 | | |||||||||| |||||||||| || |||||||||||||||||||||||||| || Sbjct 1464 ATGAAGACGAAGACATCTCTCACTTTTCACCTTTTGTTGGATACGAATAATATCAAATAA 1523 Query 1593 ATCTAGATATAATATGTTTAGGTGGGTCGCTCACTTGTAAGTTGAAACCAATTAAAGCTT 1652 || | ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1524 ATTTTGATATAATACGTT-AGGTGGGTCGCTCACTTGTAAGTTGTAACCAATTAAAGCTT 1582 Query 1653 AT---T-----T--C-TTGGGAATGGCATAATT-ATAAATCT--TATGCTAAATACGTAT 1698 || | | | ||||||||||||||||| |||||| |||||||||||||||| Sbjct 1583 ATAAATACAAATTTCCTTGGGAATGGCATAATTTATAAATGGGGTATGCTAAATACGTAT 1642 Query 1699 ATTGCTTTTGC 1709 ||||||||||| Sbjct 1643 ATTGCTTTTGC 1653 Score = 206 bits (111), Expect = 6e-52 Identities = 144/159 (91%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 853 CCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGATTCATCCTCTAATCCAAA 912 ||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 724 CCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAA 783 Query 913 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCG-TTA--CCG-T-- 966 ||||||||||||||||||||||||||||||||||||||||||||| | || || | Sbjct 784 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAA 843 Query 967 CCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACC 1005 ||| ||||||||||||||||||||||| ||||||||||| Sbjct 844 CCCAAACCCACCCGAATCATCCTCTAATCCAAACCCACC 882 Score = 180 bits (97), Expect = 4e-44 Identities = 167/198 (84%), Gaps = 15/198 (8%) Strand=Plus/Plus Query 731 AACCCACCCGACTCCTCCTCTAACCCGAACTCCAACCCCAACCCACCCGAATCATCCTCT 790 |||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 755 AACCCACCTGAATCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCATCCTCT 814 Query 791 AACCCGAACCCACCTGATTCATCCTCTAATCC-AA---A--C---TCA------AACCCA 835 ||||| |||||||| ||||| |||||||| || || | | ||| || ||| Sbjct 815 AACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCACCCGAATCATCCTCTAATCCA 874 Query 836 AACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGAT 895 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || Sbjct 875 AACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAG 934 Query 896 TCATCCTCTAATCCAAAC 913 |||||||||||||||||| Sbjct 935 TCATCCTCTAATCCAAAC 952 Score = 119 bits (64), Expect = 8e-26 Identities = 146/183 (80%), Gaps = 15/183 (8%) Strand=Plus/Plus Query 854 CCTAATCCACCCGAATCATCCTCTAACCCAAAC-CC-A-CCTGATTCATCCTCTAATCCA 910 ||||| |||||||| || ||||||||||| ||| || | || | || || | ||| || Sbjct 686 CCTAACCCACCCGATTCCTCCTCTAACCCGAACTCCAACCCCAACCCA-CC-CGAAT-CA 742 Query 911 AACTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCGTTACCGTCCCT 970 ||| ||||| |||||||| |||||||||||||| |||||| || | ||| Sbjct 743 TCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAACTCA------A---ACCCA 793 Query 971 AACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAGTCATCCTCTAATCCAAACCCA 1030 ||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||| Sbjct 794 AACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCA 853 Query 1031 CCC 1033 ||| Sbjct 854 CCC 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5