BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79500.5
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909580 jgi|Araly1|909580|Al_scaffold_0002_2661 1354 0.0
Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1 697 0.0
Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1 697 0.0
> Ahg909580 jgi|Araly1|909580|Al_scaffold_0002_2661
Length=873
Score = 1354 bits (733), Expect = 0.0
Identities = 767/784 (98%), Gaps = 0/784 (0%)
Strand=Plus/Plus
Query 65 AAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAATGTGATTGAATCCGAGGAACAT 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 34 AAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAATGTGATCGAATCCGAGGAACAT 93
Query 125 ATTCTTCGAATGGCAAAGCACATTAAAGACATTTCCACAAAAGTTGGGCTGCCCCTGGTT 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 94 ATTCTTCGAATGGCAAAGCACATTAAAGACATTGCCACAAAAGTTGGGCTGCCTCTGGTC 153
Query 185 TTCAAGTCAAGTTTTGATAAAGCTAACAGAACTTCTTCAAAGTCATTTCGTGGTCCTGGC 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 154 TTCAAGTCAAGTTTTGATAAAGCTAACAGAACTTCTTCAAAGTCATTTCGAGGTCCTGGC 213
Query 245 ATGGCCGAGGGTCTGAAGATTCTTGAGAAGGTGAAGGTAGCATATGATCTACCAATAGTA 304
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 214 ATGGCCGAGGGTCTGAAGATTCTTGAGAAGGTGAAAGTAGCATATGATCTTCCAATAGTT 273
Query 305 ACTGATGTTCATGAATCAAGCCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAG 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ACTGATGTTCACGAATCAAGCCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAG 333
Query 365 ATTCCAGCATTCTTATGTCGCCAGACAGATCTTCTGGTTGCAGCAGCACAAACCGGAAAA 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 334 ATTCCAGCATTCTTATGTCGCCAGACAGATCTTCTGGTTGCAGCAGCACACACCGGAAAA 393
Query 425 ATTATCAATATTAAGAAAGGACAATTCTGTGCTCCTTCTGTCATGGAGAATTCAGCTGAG 484
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 394 ATTATCAATATTAAGAAAGGACAATTCTGTGCTCCTTCTGTCATGGAAAATTCAGCCGAG 453
Query 485 AAGATCAGACTGGCTGGGAATCCAAATGTTATGGTTTGTGAAAGAGGAACCATGTTCGGA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AAGATCAGACTGGCTGGGAATCCAAATGTTATGGTTTGTGAAAGAGGAACCATGTTCGGA 513
Query 545 TACAATGATTTGATAGTAGATCCACGAAACTTCGAGTGGATGAGAGAAGCTAATTGTCCT 604
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 514 TACAATGATTTGATAGTAGATCCACGAAACTTTGAGTGGATGAGGGAAGCTAATTGTCCT 573
Query 605 GTTGTCGCTGATATAACCCATTCACTACAACAACCTGCAGGCAAGAAGTTGGATGGTGGT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTTGTCGCTGATATAACCCATTCACTACAACAACCTGCAGGCAAGAAGTTGGATGGTGGT 633
Query 665 GGTGTTGCAAGTGGAGGCCTTCGCGAGTTAATACCATGCATTGCAAGAACAGCTGTAGCA 724
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGTGTTGCTAGTGGTGGCCTTCGCGAGTTAATACCATGCATTGCAAGAACAGCTGTAGCA 693
Query 725 GTTGGCGTCGATGGAATTTTCATGGAGGTTCATGATGATCCTCTAAGTGCTCCAGTTGAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 694 GTTGGCGTCGATGGAATTTTCATGGAGGTTCATGATGATCCTCTAAGTGCTCCGGTTGAT 753
Query 785 GGTCCAACTCAATGGCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GGTCCAACTCAATGGCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATT 813
Query 845 GCGA 848
||||
Sbjct 814 GCGA 817
Score = 97.1 bits (52), Expect = 5e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 870 GAGGGTTACAAAAGGGAAGCAGCGGCTTCAAATCGACCTTACACCCTACCGTGATTAA 927
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 816 GAGGGTCACAAAAGGGAAGCAGCGGCTCCAAATCGACCTTACACCCTACCGTGATTAA 873
> Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1
Length=885
Score = 697 bits (377), Expect = 0.0
Identities = 464/502 (92%), Gaps = 22/502 (4%)
Strand=Plus/Minus
Query 1594 CCTGTAAATGTCGTAATTGAGATCTTTGGTGAAGAGGAGAGGCAAATCTTCGCGAAGGGT 1653
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 486 CCTGTAAATGTCGTAATTGAGATCTTTGGTGAAGAGAAGAGGCAAATCTTCACGAAGGGT 427
Query 1654 ACGTACAGCTAAACCGAGATTGATGTAGAAGTCATCTTTGCTGCCGTGCTGGTACTTATC 1713
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 426 ACGTACAGCTAAACCGAGATTGATGTAGAAGTCATC-TT--TGCCGTGCTGGTACTTATC 370
Query 1714 CTGCGCACTTGGTTTGGTCTTAACCTGCGCACCTCGAACAGGAGGAGGAGCCTGGACGCT 1773
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTGCGCACTCGGTTTGGTCTTAACCTGCGCACCTCGAACAGGAGGAGGAGCCTGGACGCT 310
Query 1774 AAAGAGAGAAAGTGGAGAGAGACTATCTTCTTCAAACTCGTAGCTATT----G--GACga 1827
|||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 309 AAAGAGAGAAAGTGGAGAGAGAGTATCTTCGTCAAACTCGTAGCTATTGGAAGAAGACGA 250
Query 1828 tgatgatgatgatgatAAAGCTTGGTTGGAAATGGGTTTCTCTTTGAGTGATTTTCCGGT 1887
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 249 TGATGATGATGATGATAAAGCTTGGCTGGAAATGGGTTTGTCTTTGAGTGATTTTCCGGT 190
Query 1888 CGGAAGAAGGAAAGAAGGAGAGAGATTGGGGAGAAGAAACGCCATAGCTGCTGGATTTTA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 CGGAAGAAGGAAAGAAGGAGAGAGATTGGGGAGAAGAAACGCCATAGCTGCTGGAGTTTA 130
Query 1948 GAGCTTCTCTTGTTCTTTTGTTGTTGTTTTGTCTTAATTTTTCAAGGCGACTTAAGAGAA 2007
|||||||||||||| || | |||| |||||||||||||||||| ||| |
Sbjct 129 GAGCTTCTCTTGTT-TTCTCTTGT--------CTTAATTTTTCAAGGCGAAGTAA-A--- 83
Query 2008 TCAGAGGGAGAGGATGACGAGTTGAGAAGAGCGAAGATGCACGAAGAAGCTTTGTTGGAA 2067
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 82 TCAGAGGGAGAGGAGGATGAGTTGAGAAGAGCGAAGATGCCCGAAGAAGCTTTGTTGGAA 23
Query 2068 GATAAACAGCTGCTCGTTTTTT 2089
|||||||||||| |||||||||
Sbjct 22 GATAAACAGCTGTTCGTTTTTT 1
Score = 579 bits (313), Expect = 4e-164
Identities = 340/353 (96%), Gaps = 1/353 (0%)
Strand=Plus/Minus
Query 1172 AGGGCAAGCGGTGACCATATCCAAAACAGAAGTGGCAGGTTTGAGCTGGTGAGGGAAGTT 1231
||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 831 AGGGCAAGCAGTGACCAAATCCAAAACGGAAGTGGCAGGTTTGAGCTGGTGAGGGAAGTT 772
Query 1232 GAAGGCCAAGTTATCGACCTTATGCTCATAGATTTTGCCATTTCGGTCGAGTTTATAGCG 1291
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 771 GAAGGCCAAGTTATCGACTTTATGCTCATAGATTTTGCCGTTTCGGTCAAGTTTATAGCG 712
Query 1292 AGAAGTACCCTGAAACTCTCCCTTTGCCTCCCATGGGACTCTAGGTACACCTTTAAGATT 1351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGAAGTACCCTGAAACTCACCCTTTGCCTCCCATGGGACTCTAGGTACACCTTTAAGATT 652
Query 1352 CCACCTGATGAGAATCATGTTCTCTGATGGTTGCCAAACCCTGAAGATCTCAAGTGAGAT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CCACCTGATGAGAATCATGTTCTCTGATGGTTGCCAAACCCTGAAGATCTCAAGTGAGAT 592
Query 1412 ATCCCTGAAGAGAATCTTGCCATGAAATCTAAGTGCCCAGAAGATCAATTTGTAGTTGTC 1471
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 591 ATCCCTGAAGAGAATCTTGCCATGAAATCTGAGTGCCCAGAAGATCAATTTGTACTTGTC 532
Query 1472 AATCCCAGAGAACGTGTTCATTGGATCCACTAATGTTATATCATCCCTG-AAA 1523
|||||||||||| ||||||||||||||||| || ||||||||||||||| |||
Sbjct 531 AATCCCAGAGAATGTGTTCATTGGATCCACAAAGGTTATATCATCCCTGTAAA 479
> Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1
Length=1236
Score = 697 bits (377), Expect = 0.0
Identities = 464/502 (92%), Gaps = 22/502 (4%)
Strand=Plus/Minus
Query 1594 CCTGTAAATGTCGTAATTGAGATCTTTGGTGAAGAGGAGAGGCAAATCTTCGCGAAGGGT 1653
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 486 CCTGTAAATGTCGTAATTGAGATCTTTGGTGAAGAGAAGAGGCAAATCTTCACGAAGGGT 427
Query 1654 ACGTACAGCTAAACCGAGATTGATGTAGAAGTCATCTTTGCTGCCGTGCTGGTACTTATC 1713
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 426 ACGTACAGCTAAACCGAGATTGATGTAGAAGTCATC-TT--TGCCGTGCTGGTACTTATC 370
Query 1714 CTGCGCACTTGGTTTGGTCTTAACCTGCGCACCTCGAACAGGAGGAGGAGCCTGGACGCT 1773
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTGCGCACTCGGTTTGGTCTTAACCTGCGCACCTCGAACAGGAGGAGGAGCCTGGACGCT 310
Query 1774 AAAGAGAGAAAGTGGAGAGAGACTATCTTCTTCAAACTCGTAGCTATT----G--GACga 1827
|||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 309 AAAGAGAGAAAGTGGAGAGAGAGTATCTTCGTCAAACTCGTAGCTATTGGAAGAAGACGA 250
Query 1828 tgatgatgatgatgatAAAGCTTGGTTGGAAATGGGTTTCTCTTTGAGTGATTTTCCGGT 1887
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 249 TGATGATGATGATGATAAAGCTTGGCTGGAAATGGGTTTGTCTTTGAGTGATTTTCCGGT 190
Query 1888 CGGAAGAAGGAAAGAAGGAGAGAGATTGGGGAGAAGAAACGCCATAGCTGCTGGATTTTA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 CGGAAGAAGGAAAGAAGGAGAGAGATTGGGGAGAAGAAACGCCATAGCTGCTGGAGTTTA 130
Query 1948 GAGCTTCTCTTGTTCTTTTGTTGTTGTTTTGTCTTAATTTTTCAAGGCGACTTAAGAGAA 2007
|||||||||||||| || | |||| |||||||||||||||||| ||| |
Sbjct 129 GAGCTTCTCTTGTT-TTCTCTTGT--------CTTAATTTTTCAAGGCGAAGTAA-A--- 83
Query 2008 TCAGAGGGAGAGGATGACGAGTTGAGAAGAGCGAAGATGCACGAAGAAGCTTTGTTGGAA 2067
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 82 TCAGAGGGAGAGGAGGATGAGTTGAGAAGAGCGAAGATGCCCGAAGAAGCTTTGTTGGAA 23
Query 2068 GATAAACAGCTGCTCGTTTTTT 2089
|||||||||||| |||||||||
Sbjct 22 GATAAACAGCTGTTCGTTTTTT 1
Score = 562 bits (304), Expect = 4e-159
Identities = 337/353 (95%), Gaps = 1/353 (0%)
Strand=Plus/Minus
Query 1172 AGGGCAAGCGGTGACCATATCCAAAACAGAAGTGGCAGGTTTGAGCTGGTGAGGGAAGTT 1231
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 831 AGGGCAAGCAGTGACCAAATCCAAAACAGAAGTTGCAGGTTTGAGCTGGTGAGGGAAGTT 772
Query 1232 GAAGGCCAAGTTATCGACCTTATGCTCATAGATTTTGCCATTTCGGTCGAGTTTATAGCG 1291
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 771 GAAGGCCAAGTTATCGACTTTATGCTCATAGATTTTGCCGTTTCGGTCAAGTTTATAGCG 712
Query 1292 AGAAGTACCCTGAAACTCTCCCTTTGCCTCCCATGGGACTCTAGGTACACCTTTAAGATT 1351
|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 711 AGAAGTACCCTGAAACTCACCCTTTGCCTCCCATGGAACTGGAGGTACACCTTTAAGATT 652
Query 1352 CCACCTGATGAGAATCATGTTCTCTGATGGTTGCCAAACCCTGAAGATCTCAAGTGAGAT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CCACCTGATGAGAATCATGTTCTCTGATGGTTGCCAAACCCTGAAGATCTCAAGTGAGAT 592
Query 1412 ATCCCTGAAGAGAATCTTGCCATGAAATCTAAGTGCCCAGAAGATCAATTTGTAGTTGTC 1471
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 591 ATCCCTGAAGAGAATCTTGCCATGAAATCTGAGTGCCCAGAAGATCAATTTGTACTTGTC 532
Query 1472 AATCCCAGAGAACGTGTTCATTGGATCCACTAATGTTATATCATCCCTG-AAA 1523
|||||||||||| ||||||||||||||||| || ||||||||||||||| |||
Sbjct 531 AATCCCAGAGAATGTGTTCATTGGATCCACAAAGGTTATATCATCCCTGTAAA 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5