BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79530.1 Length=1745 Score E Sequences producing significant alignments: (Bits) Value Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1 2697 0.0 Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1 1365 0.0 > Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1 Length=1749 Score = 2697 bits (1460), Expect = 0.0 Identities = 1672/1767 (95%), Gaps = 43/1767 (2%) Strand=Plus/Plus Query 4 AACATTTTGGATTCTTCAC----GTTTGTTTAT-ATTTTGGGTTGGCTCTACACCTACTC 58 ||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| Sbjct 1 AACATATTGGATTCTTCACGTTTGTTTGTTTATAATTTT-GGTTGGCTCTACACCTACTC 59 Query 59 TCAGAAGTCATAAGCCAAGCAAAGGGGGTTTTAGGGTTTTTGACCGCGAGCCAGATCTCT 118 |||||||||| |||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 60 TCAGAAGTCAGAAGCCAAGCAAA-GGTGTTTTAGGGTTTTTGACCGCGAGCGAGATCTCT 118 Query 119 TTCTTTTGTTTCTCCCACTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 178 || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CTC-TTTGTTTCT-CCAGTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 176 Query 179 CTCCTACACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 238 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 CGCCTCCACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 236 Query 239 TAAGGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGG 298 |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 237 TAAGGTGTCCTCAAGTCTTGGATTTAGTCGCAACCTGAAACCATCGAGATTTTCTTCTGG 296 Query 299 GATATCTTCATCTCTACAAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 358 ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 297 GATATCTTCGTCTATACAAAAAGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 356 Query 359 TACAGAAGTGCCATCTGCAGTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 418 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 357 TACAGAAATGCCATCTGCACTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 416 Query 419 CAACGGTTTTGGTCGGATTGGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATAT 478 ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || Sbjct 417 CAACGGTTTTGGTCGGATTGGAAGGCTGGTCCTCCGCATTGCAACATCCAGGGATGACAT 476 Query 479 TGAGGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 538 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TGATGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 536 Query 539 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 596 Query 599 GGAGATCAATGGGAAGAAGGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATG 658 ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 597 GGAGATCAACGGGCAGAAGGTCAATGTTGTCAGCAAGAGAGATCCAGCTGAGATACCATG 656 Query 659 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCTGTCAAA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 657 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCTTGTCAAA 716 Query 719 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 717 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCAGCTGA 776 Query 779 CGCACCTATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGT 838 ||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||| Sbjct 777 CGCACCTATGTTTGTTGTTGGGGTAAATGAGAAGACATACCAACCAAACATGGATATAGT 836 Query 839 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGA 898 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 837 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCGAAGGTGGTGCATGAGGA 896 Query 899 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 956 Query 959 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1016 Query 1019 TCCTAGCTCAACCGGCGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1078 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1017 TCCTAGCTCAACCGGCGCCGCTAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1076 Query 1079 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1136 Query 1139 TCGACTTGAGAAGGGTGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGA 1198 |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| Sbjct 1137 TCGACTTGAGAAGGGTGCCTCTTATGAAGATGTTAAAGCAGCCATTAAGTATGCCTCAGA 1196 Query 1199 AGGACCTCTTAAAGGCATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTTCGT 1258 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1197 AGGACCTCTTAAAGGCATTCTCGGGTATACAGATGAAGATGTCGTCTCCAACGATTTCGT 1256 Query 1259 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTT 1318 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1257 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGGATTGGATTGAGCAAGTCCTT 1316 Query 1319 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1376 Query 1379 TATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTAAATACACACACCAGTTCTTGCAGA 1438 |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| Sbjct 1377 TATAGAGCACATGGCTTTGGTAGCAGCCAGCCACTAAATACACAC-C-AGTTCTTGCAGA 1434 Query 1439 AGCTTGAGTCTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGTTTGGATTTGTTCG 1498 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1435 AGCTTGAGACTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGATTGGATTTGTTCG 1494 Query 1499 GTTCAATTAGGTGCCACTGTGCTAGGTGTTTTGA-AATATTTGGCTTGAATCTCGAGCCT 1557 |||||||||||||| | ||||||||||| || |||||| ||||||| ||||||| Sbjct 1495 GTTCAATTAGGTGC---T-----AGGTGTTTTGAGAA-ATTTGGTTTGAATCACGAGCCT 1545 Query 1558 TTACT-CTATTTTTGTTCTGTTCCAGTATCAGCAAC--C--A---T-GATTTGGTCCAAA 1608 | || ||||||||||| ||||||||||| |||||| | | | |||| |||||||| Sbjct 1546 AT-CTTCTATTTTTGTTTTGTTCCAGTATGAGCAACTACGGAAACTAGATTGGGTCCAAA 1604 Query 1609 AGACTGAAAAACTGTGCGACTTACATCTATGAA-TAAGGGGCTAAGCTAGTTGTACTTTA 1667 ||||| |||||||||||||||||||||||| || ||||||||||| || ||||||||||| Sbjct 1605 AGACT-AAAAACTGTGCGACTTACATCTATCAAATAAGGGGCTAAACTTGTTGTACTTTA 1663 Query 1668 CCAAAAATAGCTTACCAGTATAAGCAAC----GTTTGGATA-CTTCTTGATA--GCG--C 1718 |||||||||||||||||||||||||||| ||||||| | |||||||||| | | | Sbjct 1664 CCAAAAATAGCTTACCAGTATAAGCAACAATTGTTTGGA-AGCTTCTTGATAATGAGTGC 1722 Query 1719 ATCGTTAGCTTTGCCCGTGCTTATGAC 1745 ||||||||||||||||||||||||||| Sbjct 1723 ATCGTTAGCTTTGCCCGTGCTTATGAC 1749 > Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1 Length=1368 Score = 1365 bits (739), Expect = 0.0 Identities = 1108/1284 (86%), Gaps = 34/1284 (3%) Strand=Plus/Plus Query 147 ATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCTCCTACACGGTTGCCGCTCCTCGCCCT 206 |||||||||||||||||||||||||| |||||| || | | | || |||||||| | Sbjct 105 ATGGCCTTCTCTTCTCTCCTCAGATCCGCCGCC-ACTTC-C-GCCGCAGCTCCTCGTGTT 161 Query 207 GA-CTTTTTCTCGTCGCCGGCGT-CTGATCATTCTAAGGTGTTGTCAAGTCTTGGATTTA 264 || |||| || | ||| | ||| | ||||||||| |||| ||||||||||||||| | Sbjct 162 GAGCTTTATC-CATCGTCATCGTAC-GATCATTCTCAGGTCACGTCAAGTCTTGGATTCA 219 Query 265 GTCGCAACCTGAAGC-CATCAAGATTTTCT--T-CTGGGATATCTTCATCTCTACAAAAT 320 || ||| ||| | | | || ||||||||| | || | | | |||| || ||||| Sbjct 220 CTCACAATCTG-ACCTCGTCTAGATTTTCTGGTGCT-GCA-GT-TTCA--ACTGGAAAAT 273 Query 321 GGCAATGC-AAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGTGCCAT-CTGCAG 378 ||||||| ||| || || ||||||||||||||||| |||||||||| || | || | Sbjct 274 -GCAATGCGAAG-AGCGTTCAACCCATCAAGGCCACAGCTACAGAAGCACC-TCCTATTG 330 Query 379 TTCGA-AGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGGATT 437 ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 331 TTC-ATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATT 389 Query 438 GGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATATTGAGGTTGTAGCAGTGAAT 497 |||||||||||||||||||| || || | |||||||||||||||||||||||||| || Sbjct 390 GGAAGGTTGGTCCTCCGCATCGCTACCTTTAGGGATGATATTGAGGTTGTAGCAGTCAAC 449 Query 498 GACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGA 557 || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 450 GATCCATTCATAGACGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTCATGGA 509 Query 558 AATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTTGGAGATCAATGGGAAGA-A 616 |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| || | | Sbjct 510 AATTACAAAGGAACCATCAATGTAATTGATGATTCTACTTTGGAGATCAATGGAAA-ACA 568 Query 617 GGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATGGGCTGATCTTGGAGCTGA 676 |||||| ||||||||||||||||| ||| |||| ||||| |||||||||||||||||||| Sbjct 569 GGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGA 628 Query 677 TTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCT-GT-CAAAGGCTGCATCCCATTTG 734 ||||||||||||||||| || |||||||||||| | | ||| | || |||| |||||| Sbjct 629 GTATGTTGTTGAGTCTTCGGGGGTATTCACCACCGTTGGACAA-G-CTTCATCACATTTG 686 Query 735 AAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGACGCACCTATGTTTGTT 794 ||||| || ||||||||||| || |||||||| ||||| || ||||| || ||||| ||| Sbjct 687 AAGGGTGGCGCCAAGAAAGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATGTTCGTT 746 Query 795 GTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGT 854 ||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 747 GTTGGAGTAAATGAGAAGACATACCAACCTAACATGGATATAGTCTCCAATGCAAGCTGT 806 Query 855 ACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAA 914 ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 807 ACCACCAATTGCCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGAATTCTTGAA 866 Query 915 GGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGGCCATCA 974 |||||||||||||| |||||||| || |||||||||||||||||||| || || |||||| Sbjct 867 GGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGCCCATCA 926 Query 975 ATGAAGGACTGGAGAGGAGGTCGG-GGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 1033 |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 927 ATGAAGGACTGGAGAGGAGG-CAGAGGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 985 Query 1034 CGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGAATGGC 1093 ||| || |||||||| ||||| || ||||| ||||| ||||| ||||| ||||||||||| Sbjct 986 CGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACGGGAATGGC 1045 Query 1094 CTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAGAAGGG 1153 ||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||| Sbjct 1046 CTTCCGTGTCCCAACACCAAATGTTTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGGA 1105 Query 1154 TGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGAAGGACCTCTTAAAGG 1213 ||| ||||| ||||| |||||||||||||| ||| ||| ||||||||||| |||| || Sbjct 1106 TGCATCTTATGAAGACGTTAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTTAGGGG 1165 Query 1214 CATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTT-CGTCGGTGATTCAAGGT 1272 |||||| || || ||||| |||||||||||||| |||||||| | | || |||||||||| Sbjct 1166 CATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTT-GGAGATTCAAGGT 1224 Query 1273 CCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTTTGTGAAACTTGTCT 1332 | ||||||||||| || |||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1225 CAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACTTGTCT 1284 Query 1333 CTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGG 1392 | ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1285 CCTGGTATGACAACGAATGGGGTTACAGTAACCGAGTCCTTGACCTGATAGAGCACATGG 1344 Query 1393 CTTTGGTAGCTGCCAGCCACTAAA 1416 | || || || |||||| ||||| Sbjct 1345 CGTTAGTTGCAGCCAGCTGCTAAA 1368 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65477131155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5