BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79530.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1 2697 0.0
Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1 1365 0.0
> Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1
Length=1749
Score = 2697 bits (1460), Expect = 0.0
Identities = 1672/1767 (95%), Gaps = 43/1767 (2%)
Strand=Plus/Plus
Query 4 AACATTTTGGATTCTTCAC----GTTTGTTTAT-ATTTTGGGTTGGCTCTACACCTACTC 58
||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1 AACATATTGGATTCTTCACGTTTGTTTGTTTATAATTTT-GGTTGGCTCTACACCTACTC 59
Query 59 TCAGAAGTCATAAGCCAAGCAAAGGGGGTTTTAGGGTTTTTGACCGCGAGCCAGATCTCT 118
|||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 60 TCAGAAGTCAGAAGCCAAGCAAA-GGTGTTTTAGGGTTTTTGACCGCGAGCGAGATCTCT 118
Query 119 TTCTTTTGTTTCTCCCACTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 178
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTC-TTTGTTTCT-CCAGTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 176
Query 179 CTCCTACACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 238
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGCCTCCACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 236
Query 239 TAAGGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGG 298
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 237 TAAGGTGTCCTCAAGTCTTGGATTTAGTCGCAACCTGAAACCATCGAGATTTTCTTCTGG 296
Query 299 GATATCTTCATCTCTACAAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 358
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATATCTTCGTCTATACAAAAAGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 356
Query 359 TACAGAAGTGCCATCTGCAGTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 418
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACAGAAATGCCATCTGCACTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 416
Query 419 CAACGGTTTTGGTCGGATTGGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATAT 478
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 417 CAACGGTTTTGGTCGGATTGGAAGGCTGGTCCTCCGCATTGCAACATCCAGGGATGACAT 476
Query 479 TGAGGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGATGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 536
Query 539 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 596
Query 599 GGAGATCAATGGGAAGAAGGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATG 658
||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 597 GGAGATCAACGGGCAGAAGGTCAATGTTGTCAGCAAGAGAGATCCAGCTGAGATACCATG 656
Query 659 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCTGTCAAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 657 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCTTGTCAAA 716
Query 719 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCAGCTGA 776
Query 779 CGCACCTATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGT 838
||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||
Sbjct 777 CGCACCTATGTTTGTTGTTGGGGTAAATGAGAAGACATACCAACCAAACATGGATATAGT 836
Query 839 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGA 898
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCGAAGGTGGTGCATGAGGA 896
Query 899 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 956
Query 959 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1016
Query 1019 TCCTAGCTCAACCGGCGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1078
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCCTAGCTCAACCGGCGCCGCTAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1076
Query 1079 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1136
Query 1139 TCGACTTGAGAAGGGTGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGA 1198
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 1137 TCGACTTGAGAAGGGTGCCTCTTATGAAGATGTTAAAGCAGCCATTAAGTATGCCTCAGA 1196
Query 1199 AGGACCTCTTAAAGGCATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTTCGT 1258
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1197 AGGACCTCTTAAAGGCATTCTCGGGTATACAGATGAAGATGTCGTCTCCAACGATTTCGT 1256
Query 1259 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTT 1318
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGGATTGGATTGAGCAAGTCCTT 1316
Query 1319 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1376
Query 1379 TATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTAAATACACACACCAGTTCTTGCAGA 1438
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1377 TATAGAGCACATGGCTTTGGTAGCAGCCAGCCACTAAATACACAC-C-AGTTCTTGCAGA 1434
Query 1439 AGCTTGAGTCTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGTTTGGATTTGTTCG 1498
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1435 AGCTTGAGACTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGATTGGATTTGTTCG 1494
Query 1499 GTTCAATTAGGTGCCACTGTGCTAGGTGTTTTGA-AATATTTGGCTTGAATCTCGAGCCT 1557
|||||||||||||| | ||||||||||| || |||||| ||||||| |||||||
Sbjct 1495 GTTCAATTAGGTGC---T-----AGGTGTTTTGAGAA-ATTTGGTTTGAATCACGAGCCT 1545
Query 1558 TTACT-CTATTTTTGTTCTGTTCCAGTATCAGCAAC--C--A---T-GATTTGGTCCAAA 1608
| || ||||||||||| ||||||||||| |||||| | | | |||| ||||||||
Sbjct 1546 AT-CTTCTATTTTTGTTTTGTTCCAGTATGAGCAACTACGGAAACTAGATTGGGTCCAAA 1604
Query 1609 AGACTGAAAAACTGTGCGACTTACATCTATGAA-TAAGGGGCTAAGCTAGTTGTACTTTA 1667
||||| |||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1605 AGACT-AAAAACTGTGCGACTTACATCTATCAAATAAGGGGCTAAACTTGTTGTACTTTA 1663
Query 1668 CCAAAAATAGCTTACCAGTATAAGCAAC----GTTTGGATA-CTTCTTGATA--GCG--C 1718
|||||||||||||||||||||||||||| ||||||| | |||||||||| | | |
Sbjct 1664 CCAAAAATAGCTTACCAGTATAAGCAACAATTGTTTGGA-AGCTTCTTGATAATGAGTGC 1722
Query 1719 ATCGTTAGCTTTGCCCGTGCTTATGAC 1745
|||||||||||||||||||||||||||
Sbjct 1723 ATCGTTAGCTTTGCCCGTGCTTATGAC 1749
> Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1
Length=1368
Score = 1365 bits (739), Expect = 0.0
Identities = 1108/1284 (86%), Gaps = 34/1284 (3%)
Strand=Plus/Plus
Query 147 ATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCTCCTACACGGTTGCCGCTCCTCGCCCT 206
|||||||||||||||||||||||||| |||||| || | | | || |||||||| |
Sbjct 105 ATGGCCTTCTCTTCTCTCCTCAGATCCGCCGCC-ACTTC-C-GCCGCAGCTCCTCGTGTT 161
Query 207 GA-CTTTTTCTCGTCGCCGGCGT-CTGATCATTCTAAGGTGTTGTCAAGTCTTGGATTTA 264
|| |||| || | ||| | ||| | ||||||||| |||| ||||||||||||||| |
Sbjct 162 GAGCTTTATC-CATCGTCATCGTAC-GATCATTCTCAGGTCACGTCAAGTCTTGGATTCA 219
Query 265 GTCGCAACCTGAAGC-CATCAAGATTTTCT--T-CTGGGATATCTTCATCTCTACAAAAT 320
|| ||| ||| | | | || ||||||||| | || | | | |||| || |||||
Sbjct 220 CTCACAATCTG-ACCTCGTCTAGATTTTCTGGTGCT-GCA-GT-TTCA--ACTGGAAAAT 273
Query 321 GGCAATGC-AAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGTGCCAT-CTGCAG 378
||||||| ||| || || ||||||||||||||||| |||||||||| || | || |
Sbjct 274 -GCAATGCGAAG-AGCGTTCAACCCATCAAGGCCACAGCTACAGAAGCACC-TCCTATTG 330
Query 379 TTCGA-AGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGGATT 437
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 331 TTC-ATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATT 389
Query 438 GGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATATTGAGGTTGTAGCAGTGAAT 497
|||||||||||||||||||| || || | |||||||||||||||||||||||||| ||
Sbjct 390 GGAAGGTTGGTCCTCCGCATCGCTACCTTTAGGGATGATATTGAGGTTGTAGCAGTCAAC 449
Query 498 GACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGA 557
|| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 450 GATCCATTCATAGACGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTCATGGA 509
Query 558 AATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTTGGAGATCAATGGGAAGA-A 616
|||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 510 AATTACAAAGGAACCATCAATGTAATTGATGATTCTACTTTGGAGATCAATGGAAA-ACA 568
Query 617 GGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATGGGCTGATCTTGGAGCTGA 676
|||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||
Sbjct 569 GGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGA 628
Query 677 TTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCT-GT-CAAAGGCTGCATCCCATTTG 734
||||||||||||||||| || |||||||||||| | | ||| | || |||| ||||||
Sbjct 629 GTATGTTGTTGAGTCTTCGGGGGTATTCACCACCGTTGGACAA-G-CTTCATCACATTTG 686
Query 735 AAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGACGCACCTATGTTTGTT 794
||||| || ||||||||||| || |||||||| ||||| || ||||| || ||||| |||
Sbjct 687 AAGGGTGGCGCCAAGAAAGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATGTTCGTT 746
Query 795 GTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGT 854
||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 747 GTTGGAGTAAATGAGAAGACATACCAACCTAACATGGATATAGTCTCCAATGCAAGCTGT 806
Query 855 ACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAA 914
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 807 ACCACCAATTGCCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGAATTCTTGAA 866
Query 915 GGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGGCCATCA 974
|||||||||||||| |||||||| || |||||||||||||||||||| || || ||||||
Sbjct 867 GGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGCCCATCA 926
Query 975 ATGAAGGACTGGAGAGGAGGTCGG-GGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 1033
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 927 ATGAAGGACTGGAGAGGAGG-CAGAGGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 985
Query 1034 CGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGAATGGC 1093
||| || |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||
Sbjct 986 CGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACGGGAATGGC 1045
Query 1094 CTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAGAAGGG 1153
||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1046 CTTCCGTGTCCCAACACCAAATGTTTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGGA 1105
Query 1154 TGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGAAGGACCTCTTAAAGG 1213
||| ||||| ||||| |||||||||||||| ||| ||| ||||||||||| |||| ||
Sbjct 1106 TGCATCTTATGAAGACGTTAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTTAGGGG 1165
Query 1214 CATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTT-CGTCGGTGATTCAAGGT 1272
|||||| || || ||||| |||||||||||||| |||||||| | | || ||||||||||
Sbjct 1166 CATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTT-GGAGATTCAAGGT 1224
Query 1273 CCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTTTGTGAAACTTGTCT 1332
| ||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1225 CAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACTTGTCT 1284
Query 1333 CTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGG 1392
| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1285 CCTGGTATGACAACGAATGGGGTTACAGTAACCGAGTCCTTGACCTGATAGAGCACATGG 1344
Query 1393 CTTTGGTAGCTGCCAGCCACTAAA 1416
| || || || |||||| |||||
Sbjct 1345 CGTTAGTTGCAGCCAGCTGCTAAA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5