BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79550.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2 2311 0.0
Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1 632 2e-180
> Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2
Length=1545
Score = 2311 bits (1251), Expect = 0.0
Identities = 1372/1430 (96%), Gaps = 10/1430 (1%)
Strand=Plus/Plus
Query 114 CAGTGTTTTTAGTTTGTTTTACGAAGAATCAACTATGGCGACGAAGAGAAGCGTTGGAAC 173
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 94 CAGTGTTTTTAATTTGTCTTACGAAGAATCTACTATGGCGACGAAGAGAAGCGTTGGAAC 153
Query 174 TTTGAAGGAAGCGGATCTGAAGGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 233
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 154 TTTGAAGGAAGCGGATCTGAAAGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 213
Query 234 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 273
Query 294 CAAGTACTTGATGGGTAATGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CAAGTACTTGATGGGTAACGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 333
Query 354 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGG 413
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 334 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCGAGATTGTCTGAACTTCTTGG 393
Query 414 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 453
Query 474 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGAGAA 533
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 454 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCTGAAGAAGAGAA 513
Query 534 GAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGATGC 593
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 514 GAACGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTCTATGTTAATGATGC 573
Query 594 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAAGCC 653
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 574 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGTGTTGCCAAATACTTGAAGCC 633
Query 654 TTCAGTTGCTGGTTTCCTCATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGGCAAA 713
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 634 TTCAGTTGCTGGTTTCCTCATGCAAAAGGAACTTGATTACCTTGTTGGAGCTGTGGCAAA 693
Query 714 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 753
Query 774 CATTGAGTCTCTCTTGAACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTTAC 833
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 754 CATTGAGTCACTCTTGTCCACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTCAC 813
Query 834 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 873
Query 894 CTTGGCAAAGTCACTCATGGAGAAAG-CAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 952
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 874 CTTGGCAAAGTCACTCATGGA-AAAGGCAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 932
Query 953 CCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTGCCAGCCA 1012
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 933 CCGATGTGGTTATTGCTGACAAGTTTGCTCCAGATGCTAACAGCAAGATAGTGCCAGCCA 992
Query 1013 CTGCCATCCCTGATGGCTGGATGGGTCTAGATATTGGTCCAGACTCCATCAAGACATTCA 1072
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 993 CTGCCATCCCAGATGGCTGGATGGGTCTAGATATTGGTCCAGATTCCATCAAGACATTCA 1052
Query 1073 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTGTTTGAAT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1053 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTTTTTGAAT 1112
Query 1133 TCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1192
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TCGATAAGTTTGCAGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1172
Query 1193 AGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTT 1252
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1173 AGGGAGTAACCACAATCATTGGAGGGGGTGACTCTGTTGCTGCTGTCGAGAAGGTCGGTT 1232
Query 1253 TGGCAGACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTTGGAGCTTCTTGAGG 1312
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1233 TGGCTGACAAGATGAGTCACATCTCTACCGGAGGTGGTGCTAGTTTGGAGCTTCTTGAGG 1292
Query 1313 GTAAGCCACTTCCAGGAGTCCTCGCTCTCGACGAAGCTTGAAAATCCTCACGTTGGATTT 1372
| |||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||
Sbjct 1293 GGAAGCCACTTCCAGGAGTCCTCGCTCTTGATGAAGCTTGAGAATCCTCACTTTGGATTT 1352
Query 1373 C-ATCGCTATTTTGTGTTGTTATATGTATAACAAGTCGTCTGGTTATCTTGTGACCAGAC 1431
||| || ||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1353 TTATCTCTCTTTTGTGTTGTTATATGTATAACAAGTTGTCTGGTTCTCTCATGACCAGAC 1412
Query 1432 GAGCAAGCCATTATT-TA-TCAGCTTGAGATTT-TCGTCTACGGCTCTCtttttat--ga 1486
||||||||||||||| | |||||||||||||| | |||| ||||||||||||| | ||
Sbjct 1413 GAGCAAGCCATTATTATTGTCAGCTTGAGATTTCT-GTCTGCGGCTCTCTTTTTTTAAGA 1471
Query 1487 gttttttagtttggagcctttttttAATAATAAGAGATGAAACTCTGATT 1536
|||||| ||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1472 GTTTTT-AGTTTGGGGCCTTTTCTTAATAAAAAGAGATGAAACTCTGATT 1520
> Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1
Length=1644
Score = 632 bits (342), Expect = 2e-180
Identities = 886/1146 (77%), Gaps = 48/1146 (4%)
Strand=Plus/Plus
Query 183 AGCGGATCTGAAGGGAAAG-AGTGTGTTCGTGAGGGTTGATCTCAACGTTCCTTTGGATG 241
||| ||| ||||||| ||| || || |||||||| | ||||||||| || ||| | ||||
Sbjct 327 AGCTGATTTGAAGGGGAAGAAG-GTTTTCGTGAGAGCTGATCTCAATGTACCTCTCGATG 385
Query 242 ATAACTCTA-AC-ATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCATCAAGTA 299
||||| | | || ||||| || || ||||| || ||||||||| |||| || ||||||||
Sbjct 386 ATAAC-C-AGACTATCACTGACGATACCAGAATCCGTGCCGCTATTCCAACGATCAAGTA 443
Query 300 CTTGATGGGTAATGGAT-CTAGGGTTGTTCTCTGCAGTCACT-TGGGCCGCCCAAAAGGT 357
||||| | ||||| | ||| ||| | |||| || ||| | |||| | ||||| ||
Sbjct 444 TTTGATCGACAATGG-TGCTAAAGTTATCCTCTCCACTCA-TCTGGGAAGGCCAAAGGGA 501
Query 358 GTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCC-AGATTGTCTGAACTTCTTGGTGT 416
|| || || |||| || || |||||||| ||| || | || || ||||||||| |
Sbjct 502 GTCACACCAAAGTTTAGTTTGGCTCCTCTTGT-CCCTAGGCTCTCCGAGCTTCTTGGTAT 560
Query 417 TGAGGT--TGTAATGGCAAATGACTCTATTGGT-GAGGAAGTCCAG-AAG-TTGGTTGCA 471
|||||| | || || |||| | ||| ||| | ||||| || ||| ||||| ||
Sbjct 561 TGAGGTCACG-AA-AGCTGATGATTGTATCGGTCCA-GAAGT--AGAAAGCTTGGTGGCT 615
Query 472 GGACTACCTGAAGGTGGTGTTTTGC-TCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGA 530
|| ||||||||||| ||||||| |||| |||||||| ||||| ||| || |||||
Sbjct 616 TCTCTTCCTGAAGGTGGAGTTTTGCTTCTT-GAGAATGTCAGGTTTTACAAGGAAGAAGA 674
Query 531 GAAGAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGA 590
|||||| |||||||| ||||| |||||||||||| |||| || || |||| || |||||
Sbjct 675 GAAGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGA 734
Query 591 TGCCTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAA 650
||| ||||||||||||||||||||||||||||| || || ||||| | || ||||||||
Sbjct 735 TGCTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAA 794
Query 651 GCCTTCAGTTGCTGGTTTCCT-CATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGG 709
||||||||||||||||||||| | |||| ||||| || || || ||||| || |||||
Sbjct 795 GCCTTCAGTTGCTGGTTTCCTTC-TGCAAAAGGAGCTGGACTATCTTGTTGGCGCTGTTT 853
Query 710 CAAACCCCAAGA-AGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATT 768
||||||| |||| | || ||||| ||||| || || || || ||||| ||| ||||||||
Sbjct 854 CAAACCCAAAGAGA-CCATTTGCAGCCATAGTGGGTGGTTCCAAGGTCTCATCAAAGATT 912
Query 769 GGTGTCATTGAGTCTCT-CTTGA-ACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGA 826
|| || ||||| || || || || | | || || ||||| || || ||||| || ||||
Sbjct 913 GGAGTTATTGAATCGCTTCTGGAGAAAT-GT-GATATCCTTCTTCTTGGTGGTGGAATGA 970
Query 827 TTTTTACTTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACA 886
| ||||| ||||||||||||||||| || ||||| || || |||||||| || || ||||
Sbjct 971 TCTTTACATTCTACAAGGCACAAGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACA 1030
Query 887 AGCTTGACTTGGCAA-AGTCACTCATGGAGAAAGCAAAGGCCAAAGGTGTCTCTCTCTTG 945
| ||||| ||||| | || |||| | | ||||| ||||||||||| |||||||| |||
Sbjct 1031 AACTTGAATTGGCTACAGA-ACTCCTTGCCAAAGCTAAGGCCAAAGGAGTCTCTCTTTTG 1089
Query 946 CTCCCAACCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTG 1005
| ||||| ||||| || ||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1090 TTGCCAACAGATGTTGTGGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTG 1149
Query 1006 CCAGCCA-CTGCCATCCCTGATGGCTGGATGGG-TCTAGATATTGGTCCAGACTCCATCA 1063
|| || | | | ||| || || |||||||| | | || || ||||||||||| ||||
Sbjct 1150 CCTGC-ATCAGGCATTGAGGACGGATGGATGGGAT-TGGACATCGGTCCAGACTCTATCA 1207
Query 1064 AGACATTCAGCGAAGCTCTGGACACAAC-CAAAACCA-TCATCTGGAATGGTCCCATGGG 1121
| || |||| |||||||||||||||||| |||| | | | || |||||||| || |||||
Sbjct 1208 AAACTTTCAACGAAGCTCTGGACACAACACAAA-C-AGTTATTTGGAATGGACCTATGGG 1265
Query 1122 TGTGTTT-GA-ATTCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCA 1179
|| ||| || || || |||||||| || ||||| ||||| ||||| || | || |||
Sbjct 1266 AGT-TTTCGAGATG-GAAAAGTTTGCGGCAGGAACAGAGGCGGTAGCGAATAAACTAGCA 1323
Query 1180 GAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTC 1239
|| || || ||||| ||||| || || || || |||||||| ||||| || ||||| ||
Sbjct 1324 GAGCTCAGTGGAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCGGTGGCTGCAGTG 1383
Query 1240 GAGAAGGTTGGTTTGGCAG-ACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTT 1298
||||| || || | |||| | ||||| |||||||| || || || || || || ||
Sbjct 1384 GAGAAAGTAGGAGTAGCAGGAGTC-ATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTT 1442
Query 1299 GGAGCT 1304
||||||
Sbjct 1443 GGAGCT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5