BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79570.1 Length=4453 Score E Sequences producing significant alignments: (Bits) Value Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1 6514 0.0 Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1 1109 0.0 Ahg319179 jgi|Araly1|319179|fgenesh1_pm.C_scaffold_3002195 327 3e-88 > Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1 Length=4196 Score = 6514 bits (3527), Expect = 0.0 Identities = 3992/4211 (95%), Gaps = 53/4211 (1%) Strand=Plus/Plus Query 170 AAAACGAGAGAAAATTGAGGGCaaaaaaaaaGATTTAGGGTTTTATTTTTTGGTAATCTG 229 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1 AAAACGAGAGAAAATTGAGGG---AAAAAAAGTTTTAGGGTTTTATTTTTTGGTAATCTG 57 Query 230 TTCTTCCTTGGCTGTGTACTGATCAACCATCAGCTAAGAGACGATATCTTCCAGTGGTTC 289 ||||||||| || ||||||||||||| | || || | | | |||||||||||||| Sbjct 58 TTCTTCCTTCGCCGTGTACTGATCAA--A-CATCT----G-CTA-ATCTTCCAGTGGTT- 107 Query 290 GATCAATTCTTCGTAAGCTTACTCGCTAAAGCTTAATGT-TTA--ACGGCATCACCAGCA 346 |||||||| || |||||||||||||||| |||||||||| | | |||||||| |||||| Sbjct 108 GATCAATTATTTGTAAGCTTACTCGCTACAGCTTAATGTGTAACGACGGCATCGCCAGCA 167 Query 347 TCTTGAAGGAGTACTAGTTTTGGTTAGATTCGTCATACATGTGTTTGAATTAGAGTAATT 406 ||||||||||||| ||||||| || ||||||||||||||||||||| ||||||| ||||| Sbjct 168 TCTTGAAGGAGTAGTAGTTTTTGTCAGATTCGTCATACATGTGTTTCAATTAGATTAATT 227 Query 407 TGAAGGGCTGTTTTGTTTTGTGATGGATAAAGCTAGACATCAACAGCTTTTTCAGCATTC 466 |||||| ||| | | | |||||||||||||||||||||||||||||||||||||||| || Sbjct 228 TGAAGGACTG-TAT-TCTTGTGATGGATAAAGCTAGACATCAACAGCTTTTTCAGCACTC 285 Query 467 CATGGAACCTGGTTATAGAAACGAGACTGTTCCTCAACCATTTATGCCTGATCAAACAGG 526 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 286 CATGGAACCTGGTTATGGAAACGAGGCTGTTCCTCAACCATTTATGCCTGATCAAACAGG 345 Query 527 GAGCGCGAGTGCTAATATGCGACCTCCCAATTCTAATGGTTCAGATGTTAAGGCGGTGCA 586 |||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 346 GAGCACGAGTGCTAATATGCGACCTCCTAATTCTAATGGTTCAGATGTTAAGCCTGTGCA 405 Query 587 TAACTTCTCCATACAAACAGGTGAGGAATTCTCTCTTGAGTTTATGCGTGATCGGGTGAT 646 ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 406 TAACTACTCTATACAAACAGGTGAGGAATTCTCTCTTGCGTTTATGCGTGATCGGGTGAT 465 Query 647 TCCTCAGAGGTCTTCCAATCCCAATGGAGCTGGCGACATGAACTATAACACTGGTTATAT 706 |||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||| Sbjct 466 TCCTCAGAGGTCTTCCAATCCCAATGGAGCTGCCGACATGAATTCTACCACTGGTTATAT 525 Query 707 GGAGCTTCGAGGCTTGATAGGGATAAGTCACACAGGATCTGAGTGTGCTTCAGATGTCTC 766 ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 GGAGCTTAGAGGTTTAATAGGGATAAGTCACACAGGATCTGAGTGTGCTTCAGATGTCTC 585 Query 767 AAGGTTCAGCACTGTGGAAAATGGCACCAGTGATATTGAGAGGACTAACTCTTCGCTTCA 826 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 586 AAGGTTCAGCACTGTGGAAAACGGCACCAGGGATATTGAGAGGACCAACTCTTCGCTTCA 645 Query 827 CGAGTTTGGAAATAAACTAAATCATGTCCAGTCAGCACCACAAGCTTTACTAAGTAAAGA 886 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 646 CGAGTTTGGAAATAAACTTGGTCATGTCCAGTCAGCACCACAAGCTTTAATAAGTAAAGA 705 Query 887 TAGCAGTGTAGGAAATTTACATGGATACAAGAACACGTCTTCTTCAGCCTCAGGTAGTGT 946 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 706 TAGCAGTGTAGGAAATTTACATGGAT------ACACGTCTTCTTCAGCCTCAGGCAGTGT 759 Query 947 AACAGCAAAGGTGAAGATCCTTTGCAG-TTTCGGTGGGAAAATACTTCCACGTCCAGGTG 1005 ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 760 AACAGCAAAGGTGAAGATCCTCTGCAGCTTT-GGTGGGAAAATACTTCCACGTCCAGGTG 818 Query 1006 ATTCAAAGCTTCGATACGTTGGAGGTGAAACACACATTATATCCATAAGAAAGGATATAT 1065 ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 819 ATTCAAAGCTTAGATATGTTGGAGGTGAAACACACATTATTTCCATAAGAAAGGATATAT 878 Query 1066 CTTGGCAGGAGCTTAGGCAAAAAATCCTTGAAATCTATTACCAAACACGTGTTGTAAAGT 1125 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 879 CTTGGCCGGAGCTTAGGCAAAAAATCCTTGAAATCTATTACCAAACACGTGTCGTAAAGT 938 Query 1126 ATCAGCTTCCTGGTGAAGATCTTGACGCGTTGGTGTCTGTATCATCTGAAGAAGATCTCC 1185 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 939 ATCAGCTTCCTGGTGAAGATCTTGACTCGTTGGTGTCTGTATCATCTGAAGAAGATCTCC 998 Query 1186 AGAATATGCTGGAAGAATATAATGAGATGGAAAACCGTGGGGGATCTCAGAAGCTTAGGA 1245 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 AGAATATGTTGGAAGAATATAATGAGATGGAAAACCGTGGGGGATCTCAGAAGCTTAGGA 1058 Query 1246 TGTTTCTTTTCTCCATCAGTGATATGGATGATGCTCTTCTGGGGGTTAACAAAAATGACG 1305 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1059 TGTTTCTGTTCTCCATCAGTGATATGGATGATGCTCTTTTGGGGGTTAACAAAAATGACG 1118 Query 1306 GCGACTCTGAGTTTCAATATGTTGTAGCTGTAAATGGCATGGACATTGGATCAGGAAAGA 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 GCGACTCTGAGTTTCAATATGTTGTAGCTGTAAATGGCATGGACATTGGATCAGGAAAGA 1178 Query 1366 ACTCGACCCTTCTTGGGCTTGACAGCTCTTCAGCAAACAACTTAGCTGAGCTTGATGTGC 1425 |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1179 ACTCAACCCTTCTTGGGCTGGACAGCTCTTCAGCAAACAACTTAGCTGACCTTGATGTGC 1238 Query 1426 GGAACACTGAGGGGATCAATACCATTGCTGGAGATGTTGTTGGAGTCGGCGCATCACAGT 1485 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1239 AGAACACTGAGGGAATCAATACCATTGCTGGAGATGTTGTTGGAGTTGGCGCATCACAGT 1298 Query 1486 TAATGGTGA-ATGGTTTCCAACAAACGTCTGCTCAACAGTCTGAGTCTATTCCACCAAGC 1544 | ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1299 TGATGGT-AGATGGCTTCCAACAAACGTCTGTTCAACAGTCTGAGTCTATTCCACCAAGC 1357 Query 1545 TCATCGCTTCATTATTCTCAATCTATTCCACTGAATGCTGCATATCAGTTGCAGCAATCT 1604 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1358 TCATCACTTCATTATTCTCAATCTATTCCTCTGAATGCTGCATATCAGTTGCAGCAATCT 1417 Query 1605 GTTCCGCCAAGCTCTGCTCTTCATTATCCCCAGTCCATTACCCCAGGTTCCTCTCTTCAG 1664 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1418 GTTCCGCCAAGTTCTGCTCTTCATTATCCCCAGTCCATTATCCCAGGTTCCTCTCTTCAG 1477 Query 1665 TATCCCCAATCTATTACGCCAGGCTCCTCTTATCAGTATCCACAATCCATCATACCTGGT 1724 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 1478 TATCCCCAACCTATTACGCCAAGCTCCTCTTATCAGTATCCACAATCCATCACACCGGGT 1537 Query 1725 TCTGCCAGCTCCTATGGAATATACCCACAATATTATGGGCATGTGGTTCAACATGGAGAA 1784 ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 1538 TCTGCCACCTCCTATGGAATATACCCGCAATATCATGGGCATGTGGTTCAACATGGAGAA 1597 Query 1785 AGAGAACGGTTTCCTCTCTATCCTGATCACAGTTCTAACTACTCCGCTATCGGGGAAACT 1844 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1598 AGAGAACGGTTCCCTCTCTATCCTGATCATAGTTCTAACTACTCCGCTATCGGGGAAACT 1657 Query 1845 ACCAGTTCCATACCGATCCAAGGGCATGTCAGTCAGCAAGGTGGCTGGGCTGAAGGGTAT 1904 ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1658 ACCAGTTCCATACCGCTCCAAGGGCACGTCAATCAGCAAGGTGGCTGGGCTGAAGGGTAT 1717 Query 1905 CCGTACCCTGGCAGCACACCCAAAAGCACACAAGCGCTAGCAGAGGAGCAAAAAGTATCA 1964 ||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||| Sbjct 1718 CCGTACCCTGGCAACACACCCAAAAGCTCACAAGTGCTAGCCGAGGAGCAAAAAGTATCA 1777 Query 1965 TCTGATATGAAAATTCGTGAGGAAGTTGAGCCTGAAAACCGTAAAACTCCGGGGAATGAT 2024 ||||||||||| |||||||| | ||||||||||||||| |||||||||| | |||||| Sbjct 1778 CCTGATATGAAAGTTCGTGAGCATGTTGAGCCTGAAAACTGTAAAACTCCCCGAAATGAT 1837 Query 2025 CACCAGAATCCTCCCCAAATAGATGATGTTGAGGTGAGGAATCACAATCAGGTCCGGGAG 2084 |||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1838 CACCAGAATCGTCCCCACATAGATGATTTTGAGGTGAGAAATCACAATCAGGTCCGGGAG 1897 Query 2085 ATGGCAGTTGCAACAACTCCACCTAGCCAGGATGCACATTTACTACCCCCTAGTAGAGAT 2144 || |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1898 GTGTCAGTTGCAACAACTGCACCTAGCCAGGATGCACATTTACTGCCCCCTAGTAGAGAC 1957 Query 2145 CCACGGCAGAACACTACTGCAAAACCTGCTACCTACCGTGATGCTGTTATTACTGGGCAG 2204 |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1958 CCACGGCAGACCACTCCTGCAATGCCTGCTACCTACCGTGATGCTGTTATTACTGGGCAG 2017 Query 2205 GTTCCTCTATCTGGTATTGAAGATCAGCTTTCAACTTCAAGCAGTACCTATGCCCCTGTT 2264 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2018 GTTCCTCTATCTGGTATTGAAGATCAGCTTTCAACTTCAAGCAGTACCTGTGCCCCTGTT 2077 Query 2265 CATAGCGACTCTGAGTCAAATTTAATTGATCTTAACTACCCGGAGCCTGAGCAGTCTTCC 2324 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 2078 CATAGCGACTCTGAGTCAAATTTAATTGATCTTAACTATCCGGAGCCTGAGCAGTCTCCC 2137 Query 2325 CAAAGGGTATATTGCTCAGAGAGAATACCTCGTGAACAGCTAGAATTGCTAAATCGTTTG 2384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2138 CAAAGGGTATATTGCTCAGAGAGAATACCTCGTGAACAGCTAGAATTGCTAAATCGTTTG 2197 Query 2385 TCGAAGTCCGATAACTCATTAAGCTCTCAGTTCGTAACGTCTGAGTCACCAGCAAACACT 2444 ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 2198 TCGAAGTCCGATAACTCGCTAAGCTCTCAGTTCGTAACGTCTGAGTCACAAGCAAACACT 2257 Query 2445 GCACAGCAAGATTCAGGAAAAGAAGCGGTTGGAAAGTCACATGACGAATTCAAGACTGTT 2504 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 2258 GCACAGCAAGATTCAGGAAAAGAAGCGGTTGGAAAGTCACATGACGAGTTCGAGACCGTT 2317 Query 2505 AATGATGATGCCAATCACCATACGCACAAAGATGTGGAAACAATCTTTGAAAAAGTAGGA 2564 |||||||||| || |||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2318 AATGATGATGTCACTCACCAAAAGCACAAAGATGTGGAAACAATCTTTGAAAAAGTAGGG 2377 Query 2565 GTATCAGATGAAACTTTGGAATCCGAGCCCCTGCACAAGATTGTAAATCCTGACGATGCA 2624 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 2378 GTATCAGATGAAACTTTGGAATTCGAGCCCCTGCACAAGATTGTAAATTCTGACGATGCA 2437 Query 2625 AACAAGAACAGAGTAGTCAATGGGGCAGATACTGAAATTGGTGTTTCCAACTTGAGCCAT 2684 |||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 2438 AACAAGAACAGACTAGTCAAT-GGG--GATACTGAAATTGGTGTTTCCAACTTGAGCCAT 2494 Query 2685 GTAAACGCAGCCATGAGTCATGTTATTCCTGAAGAGCAAGCTTCGCTGCAGGGAGATATT 2744 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2495 GTAAACGCAGCCATGAGTCATGTTATCCCTGAAGAGCAAGCTTCACTGCAGGGAGATATT 2554 Query 2745 CTTATTGATATCAATGACCGGTTTCCTCGTGACTTCCTCTCTGAAATATTCTCACAGGCA 2804 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 2555 CTTATTGATATCAATGACAGGTTTCCTCGTGACTTCCTTTCTGAAATATTCTCACAGGCA 2614 Query 2805 ATCTCAGAGGATACATCCACTGTCCGTCCATATCCTCACGATGGAGCTGCTGTTAGCATG 2864 ||||||||||||| |||| |||| | ||| ||||||| || |||||||||||||||||| Sbjct 2615 ATCTCAGAGGATAGATCCGCTGTTCATCCGCATCCTCATGAAGGAGCTGCTGTTAGCATG 2674 Query 2865 AATGTGCAAAATCACGATCGTAAAAACTGGTCATATTTTCAGCAGCTGGCTGAAGATCAG 2924 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2675 AATGTGCAGAATCACGATCGTAAAAACTGGTCATATTTTCAGCAGCTGGCTGAAGATCAG 2734 Query 2925 TTTATCCAAAGAGATGTTGTACTTGACCAAGCTGATTCTCGCATTCCATCTGACC-GTAA 2983 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | || Sbjct 2735 TTTAGCCAAAGAGATGTTGCACTTGACCAAGCTGATTCTCGCATTCCATCTGACCAG-AA 2793 Query 2984 AGATGGTGGAGAGAGCTCCAGATTGCCTTATGTCTCGCCATTGAGTAGAGATGGTATTTC 3043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2794 AGATGGTGGAGAGAGCTCCAGATTGCCTTATGTCTCGCCATTGAGTAGAGATGGTATTTC 2853 Query 3044 AACAAACCTTGCTAATCCTCAGTTGACTTTAGGTCAAGATTATGGGGGTAATTTTTCTGA 3103 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 2854 AACAAACCTTGCTAATCCTCAGTTGAGTTTAGGTCAAGATTATGGGGGTGATTTTTCTGA 2913 Query 3104 AAAGGATGGGGGTGGCACTGGCAGCATTCCCCCTGCTCTAGAGAATGAACAGATGAAGGT 3163 || ||||||| |||||||| ||| ||||| ||||||||||||| |||||||||||||||| Sbjct 2914 AACGGATGGGTGTGGCACTAGCACCATTCTCCCTGCTCTAGAGGATGAACAGATGAAGGT 2973 Query 3164 CACTGAGAGTGAGGAATTTGGTGCCATGGTGGAGAATCTTAGGACGCCGGATTCTGAACC 3223 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2974 TACTGAGAGTGAGGAATTTGGTGCTATGGTGGAGAATCTTAGGACGCCGGATTCTGAACC 3033 Query 3224 AAAGGATGAAAAGACAGAAACAAGGCATGCTGCGCTTCCTCCACTTGGCTCAGAGTTTGA 3283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3034 AAAGGATGAAAAGACAGAAACAAGGCATGCTGCGCTTCCTCCACTTGGCTCAGAGTTTGA 3093 Query 3284 CTACAGTGGCTTGCAGATCATTAAGAATGAAGATCTTGAGGAGTTGAGGGAGCTTGGTTC 3343 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3094 CTACAGTGGTTTGCAGATCATTAAGAATGAAGATCTTGAGGAGTTGAAGGAGCTTGGTTC 3153 Query 3344 TGGTACTTTTGGAACGGTGTATCATGGGAAGTGGAGAGGATCAGATGTCGCTATCAAGAG 3403 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 3154 TGGTACTTTTGGAACGGTGTATCATGGGAAATGGAGAGGATCAGACGTCGCTATCAAGAG 3213 Query 3404 GATAAAGAAGAGTTGCTTTGCTGGGCGGTCATCAGAGCAAGAGAGATTGACTGGTGAATT 3463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3214 GATAAAGAAGAGTTGCTTTGCTGGGCGGTCATCAGAGCAAGAGAGATTGACTGGTGAATT 3273 Query 3464 TTGGGGGGAAGCTGAAATTCTTTCAAAGCTTCATCATCCGAACGTGGTAGCATTTTATGG 3523 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3274 CTGGGGGGAAGCTGAAATTCTTTCAAAGCTTCATCATCCGAACGTTGTAGCATTTTATGG 3333 Query 3524 TGTTGTAAAAGACGGGCCTGGAGGGACCTTGGCGACTGTGACAGAGTACATGGTTGATGG 3583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3334 TGTTGTAAAAGACGGGCCTGGAGGGACCTTGGCGACTGTGACAGAGTACATGGTTGATGG 3393 Query 3584 TTCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGCATCTTGATCGTCGTAAGAGACTAAT 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3394 TTCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGCATCTTGATCGTCGTAAGAGACTAAT 3453 Query 3644 CATTGCCATGGATGCTGCATTTGGAATGGAATATTTACACTCCAAAAACACTGTTCACTT 3703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3454 CATTGCCATGGATGCTGCATTTGGAATGGAATATTTACACTCCAAAAACACTGTTCACTT 3513 Query 3704 TGATTTGAAATGTGACAATTTACTTGTGAACTTGAAAGATCCTTCTCGCCCAATCTGCAA 3763 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3514 CGATTTGAAATGTGACAATTTACTTGTGAACTTGAAAGATCCTTCTCGCCCAATCTGCAA 3573 Query 3764 GGTTGGTGACTTTGGTTTGTCAAAAATCAAGAGAAATACGTTGGTATCTGGTGGTGTACG 3823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3574 GGTTGGTGACTTTGGTTTGTCAAAAATCAAGAGAAATACGTTGGTATCTGGTGGTGTACG 3633 Query 3824 TGGAACCTTACCGTGGATGGCACCAGAGCTTCTAAACGGGAGCAGTAGCAAAGTTTCTGA 3883 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3634 TGGAACCTTACCATGGATGGCACCAGAGCTTCTAAACGGGAGCAGCAGCAAAGTTTCTGA 3693 Query 3884 AAAGGTTGATGTTTTCTCTTTCGGTATCGTTCTGTGGGAGATTCTAACCGGAGAGGAACC 3943 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3694 AAAGGTTGATGTTTTCTCTTTCGGTATCGTTTTGTGGGAGATTCTAACCGGAGAGGAACC 3753 Query 3944 ATATGCCAATATGCACTATGGGGCAATAATAGGTGGGATAGTGAACAACACACTGAGACC 4003 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3754 ATATGCGAATATGCACTATGGGGCAATAATAGGTGGGATAGTGAACAACACACTGAGACC 3813 Query 4004 AACCATACCAGGCTTCTGTGACGATGAATGGAGAACACTAATGGAGGAATGTTGGGCACC 4063 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3814 AACCATACCGGGCTTCTGTGACGATGAATGGAGAACACTAATGGAGGAATGTTGGGCACC 3873 Query 4064 AAACCCAATGGCAAGACCATCTTTCACAGAGATAGCTGGTCGCTTACGAGTAATGTCATC 4123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3874 AAACCCAATGGCAAGACCATCTTTCACAGAGATAGCTGGTCGCTTACGAGTAATGTCATC 3933 Query 4124 AGCAGCAACTTCAACTCAATCCAAGCCATCAGCTCACAGGGCTTCCAAATGAAAAACCTT 4183 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3934 AGCAGCAACTTCGACTCAATCCAAGCCACCAGCTCACAGGGCTTCCAAATGAAAAACCTT 3993 Query 4184 TCTTTTTCTTATGTGCAGTGAAAAGAGAACATAAGTCGATTACAAAGAGTCCAATTCTTT 4243 ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 3994 TCTTTTTATTATGTGCAGTGAAAAGAGAACATAGGTCGATTACAAAAAGTCCAATTCTTT 4053 Query 4244 TATACTTTTTCGATTTGGGGTTTGGAGAGAGATATTTCTTGATCCTT--CTCCTTTCCtt 4301 | ||| |||| |||||||||||||||||||||| ||||||||| | Sbjct 4054 -----------G----GGG-TTTGTAGAGAGATATTTCTTGATCCTTTTCTCCTTTCCAT 4097 Query 4302 tttttGTTCTTTAACaaaaacaaacaaaaaaaaGTTGAAAAGTTTATTCCAGTTGGTTGA 4361 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4098 TTTTT-T-CTTTAACAAAAACAAACAAAAAAAAGTTGAAAAGTTTATTCCAGTTGGTGGA 4155 Query 4362 AATTGTTTTGT 4372 |||| |||||| Sbjct 4156 AATTATTTTGT 4166 > Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1 Length=3643 Score = 1109 bits (600), Expect = 0.0 Identities = 901/1044 (86%), Gaps = 29/1044 (3%) Strand=Plus/Plus Query 3153 CAGATGAAGGTCACTGAGAGTGAGGAATTTGGTGCCATGGTGGAGAATCTT-AGGACGC- 3210 |||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||| | Sbjct 2413 CAGATGAAGGTCACAGAGAGTGAGGAATTTGGTGCTATGGTTGAGAA-GTTAAGGAC-CT 2470 Query 3211 CGGATTCTGAACCA-AAGGATGAAAAGACAGAAACAAGGCATGCTGCG-CTTCCTCCACT 3268 | || | |||| || ||||||||||||||||||||||| | |||| | ||||| ||| | Sbjct 2471 CAGACTGTGAA-CATGAGGATGAAAAGACAGAAACAAGGAACGCTG-GACTTCCCCCAGT 2528 Query 3269 T-G---G-CTC-AG-AG-TT-TGACTAC-AGTGGCTTGCAGATCATTAAGAATGAAGATC 3318 | | | ||| | || || ||| || ||||||||||||||||||| |||||| |||| Sbjct 2529 TGGCCCGTCTCTGGCAGATTACGAC-ACAAGTGGCTTGCAGATCATTATGAATGACGATC 2587 Query 3319 TTGAGGAGTTGAGGGAGCTTGGTTCTGGTACTTTTGGAACGGTGTATCATGGGAAGTGGA 3378 | |||||| | | ||||||||||||||| || || || || |||||||||||||| |||| Sbjct 2588 TCGAGGAGCTAAAGGAGCTTGGTTCTGGCACATTCGGTACAGTGTATCATGGGAAATGGA 2647 Query 3379 GAGGATCAGATGTCGCTATCAAGAGGATAAAGAAGAGTTGCTTTGCTGGGCGGTCATCAG 3438 ||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| | Sbjct 2648 GAGGATCAGATGTTGCCATCAAAAGGATAAAGAAGAGTTGCTTTGCTGGCCGATCATCTG 2707 Query 3439 AGCAAGAGAGATTGACTGGTGAATTTTGGGGGGAAGCTGAAATTCTTTCAAAGCTTCATC 3498 ||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 2708 AGCAAGAAAGATTAACTGGTGAATTCTGGGGAGAAGCTGAAATTCTTTCAAAGCTTCATC 2767 Query 3499 ATCCGAACGTGGTAGCATTTTATGGTGTTGTAAAAGACGGGCCTGGAGGGACCTTGGCGA 3558 |||| || ||||| ||||||||||||||||||||||| || ||||| | || ||||| | Sbjct 2768 ATCCAAATGTGGTTGCATTTTATGGTGTTGTAAAAGATGGCCCTGGCGCAACATTGGCTA 2827 Query 3559 CTGTGACAGAGTACATGGTTGATGGTTCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGC 3618 |||| ||||||||||||||||||||||||||||| |||||||| || |||| || || | Sbjct 2828 CTGTAACAGAGTACATGGTTGATGGTTCTCTGAGACATGTTCTACTCAGGAAAGATAGAC 2887 Query 3619 ATCTTGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCATTTGGAATGGAATATT 3678 | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2888 ACCTGGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCCTTTGGAATGGAATATT 2947 Query 3679 TACACTCCAAAAACACTGTTCACTTTGATTTGAAATGTGACAATTTACTTGTGAACTTGA 3738 | ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2948 TGCACGCCAAAAACATTGTTCACTTCGATTTGAAATGTGACAATTTACTTGTGAACCTCA 3007 Query 3739 AAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGACTTT-GGTTTGTCAAAAATCAAGAGA 3797 |||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| Sbjct 3008 AAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGA-TTTCGGTTTGTCAAAAATTAAAAGA 3066 Query 3798 AATACGTTGGTATCTGGTGGTGTACGTGGAACCTTACCGTGGATGGCACCAGAGCTTCTA 3857 ||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||| Sbjct 3067 AATACATTGGTATCTGGTGGTGTACGCGGAACCCTACCATGGATGGCACCAGAGCTTCTC 3126 Query 3858 AACGGGAGCAGTAGCAAAGTTTCTGAAAAGGTTGATGTTTTCTCTTTCGGTATCGTTCT- 3916 || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| || || Sbjct 3127 AATGGTAGCAGCAGCAAAGTTTCAGAGAAGGTCGATGTCTTCTCTTTCGGTATAGT-CTT 3185 Query 3917 GTGGGAGATTCTAACCGGAGAGGAACCATATGCCAATATGCACTATGGGGCAATAATAGG 3976 |||||||||| ||||||| |||||||||||||| ||||||||||| || || |||||||| Sbjct 3186 GTGGGAGATTTTAACCGGGGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAGG 3245 Query 3977 TGGGATAGTGAACAACACACTGAGACCAACCATACC-AGGCTTCTGTGACGATGAATGGA 4035 |||||||||||| ||||||||||| || |||||||| || || ||||||| || ||| Sbjct 3246 TGGGATAGTGAATAACACACTGAGGCCGACCATACCGAG-CTACTGTGACTCGGACTGGC 3304 Query 4036 GAACACTAATGGAGGAATGTTGGGCACCAAACCCAATGGCAAGACCATCTTTCACAGAGA 4095 ||| | |||||||||| |||||||| || ||||||| ||| | ||||| ||||| |||| Sbjct 3305 GAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGCACGGCCATCCTTCACGGAGA 3364 Query 4096 TAGCTGGTCGCTTACGAGTAATGTCATCAGCAGCAACTTC-AACTCAATCCAAGCCATCA 4154 |||||||||| ||||| || |||||| | ||||| ||||| ||| |||||||| ||| || Sbjct 3365 TAGCTGGTCGGTTACGTGTTATGTCAACTGCAGCTACTTCGAAC-CAATCCAAACCACCA 3423 Query 4155 GCTCACAGGGCTTCCAAA-TGAAA 4177 || |||| |||||| ||| ||||| Sbjct 3424 GCCCACAAGGCTTC-AAAGTGAAA 3446 Score = 765 bits (414), Expect = 0.0 Identities = 1036/1320 (78%), Gaps = 107/1320 (8%) Strand=Plus/Plus Query 462 CATTCCATGGAACCTGGTTATAG-AAACGAGACTGTTCCTCAACCATTTATGCCTGATCA 520 ||| ||||||||||||| ||| | || || |||| |||||| ||||| |||||||| Sbjct 37 CATGCCATGGAACCTGGATAT-GTCAATGACTCTGTCCCTCAAGGATTTACCCCTGATCA 95 Query 521 AACAGGG-AGCGCGAGTGCTAATATGCGACCTCCCAATTCTAATGGTTCAGATGTTAAGG 579 ||| ||| | | ||| ||| ||| | |||||| | | || | | ||||||| ||| Sbjct 96 AAC-GGGTATCTCGAATGCAAATCTCCGACCT--C-A-TC--CT-G--CAGATGTCAAGC 145 Query 580 CGGTGCATAACTT-CTCCATACAAACAGGTGAGGAATTCTCTCTTGAGTTTATGCGTGAT 638 ||| || | | || ||||||||||||||| |||||||| |||||||||||| | || ||| Sbjct 146 CGGGGCTTCA-TTACTCCATACAAACAGGGGAGGAATTTTCTCTTGAGTTTCTACGCGAT 204 Query 639 CGGGTGATTCCTCAGAGGTCTTCCAATCCCAATGGAGCTGGCGACATGAACTATAACACT 698 |||||||| |||| |||||| | ||||||| | |||||| || |||| | || | | Sbjct 205 AGGGTGATTTCTCAAAGGTCTGCAAATCCCATTTCAGCTGGAGATGTGAA-T-TATC-C- 260 Query 699 GGTTATATGGAGCTTCGAGGCTTGATAGGGATAAGTCACACAGGATCTGAGTGTGCTTCA 758 | | | | || | | | | || | ||| |||| ||||| | || |||| Sbjct 261 ---CACA--G-G-TT--A----T-A-ACGG----G-CACGCAGGGTCTGAATTTGGTTCA 300 Query 759 GATGTCTCAAGGTTCAGCACT-GTGGAAAATGGCACCAGTG-A-TATTGAGAGGACTAAC 815 ||||| || ||| | || | | |||| |||||||| || | | || |||||| || ||| Sbjct 301 GATGTTTCGAGGATGAGTA-TGGTGGGAAATGGCATGAG-GCAGTA-TGAGAGAACAAAC 357 Query 816 TCTTC-GCTTCACGAGTTTGGAAATAAACTAAATCATGTCCAGTCAGCACCACAAGCTTT 874 | | | |||||||||||| |||||||| ||| |||| ||||||||| ||||||| Sbjct 358 CCCACAG-GTCACGAGTTTGGGAATAAACTTGGGCATATCCATTCAGCACCAGAAGCTTT 416 Query 875 ACTAAGTAAAGATAGCAGTGTAGGAAATTTACATGGATACAAGAACACGTCTTCTTCAGC 934 | || || ||||||| ||| |||||||||| ||||||| | | || ||||||||||| Sbjct 417 ATTATGTCAAGATAGAAGTTTAGGAAATTTTCATGGAT--ATG--CA--TCTTCTTCAGC 470 Query 935 CTCAGGTAGTGTAACAGCAAAGG-TGAAGATCCTTTGCAG-TTTCGGTGGGAAAATACTT 992 |||||||||| ||||| |||||| | ||| ||||||| || ||| ||||||||||||||| Sbjct 471 CTCAGGTAGTTTAACAACAAAGGTTAAAG-TCCTTTGTAGCTTT-GGTGGGAAAATACTT 528 Query 993 CCACGTCCAGGTGATTCAAAGCTTCGATACGTTGGAGGTGAAACACACATTATATCCATA 1052 |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| Sbjct 529 CCACGTCCAGGTGATTCAAAGCTTAGATATGTTGGAGGTGAAACACACATTATTTCCATA 588 Query 1053 AGAAAGGATATATCTTGGCAGGAGCTTAGGCAAAAAATCCTTGAAATCTATTACCAAACA 1112 |||||||| || |||||||||||||| ||||||||| | ||||||||||| |||| || Sbjct 589 AGAAAGGACATTTCTTGGCAGGAGCTCAGGCAAAAAGTTCTTGAAATCTACTACCGGACT 648 Query 1113 CGTGTTGTAAAGTATCAGCTTCCTGGTGAAGATCTTGACGCGTTGGTGTCTGTATCATCT 1172 | |||||| |||||||| |||||||||||||||||||| || |||||||||||||||| | Sbjct 649 CATGTTGTGAAGTATCAACTTCCTGGTGAAGATCTTGATGCCTTGGTGTCTGTATCATGT 708 Query 1173 GAAGAAGATCTCCAGAATATGCTGGAAGAATATAATGAGATGGAAAACCGTGGGGGATCT 1232 || |||||||| | ||||||| |||| || |||||||||||||||||||||||||| || Sbjct 709 GACGAAGATCTACTGAATATGATGGAGGAGTATAATGAGATGGAAAACCGTGGGGGTTCG 768 Query 1233 CAGAAGCTTAGGATGTTTCTTTTCTCCATCAGTGATATGGATGATGCTCTTCTGGGGGTT 1292 || |||||||| |||||||| ||||| |||||||| |||||| ||||||| |||||||| Sbjct 769 CAAAAGCTTAGAATGTTTCTGTTCTCTGTCAGTGATTTGGATGGTGCTCTTTTGGGGGTT 828 Query 1293 AACAAAAATGACGGCGACTCTGAGTTTCAATATGTTGTAGCTGTAAATGGCATGGACATT 1352 ||||||||||| | ||||||||||| || ||||||||||||||||||| ||||||| || Sbjct 829 AACAAAAATGATGTTGACTCTGAGTTCCAGTATGTTGTAGCTGTAAATGACATGGACCTT 888 Query 1353 GGATCAGGAAAG-AACTCGACCCTTCTTGGGCTTG-ACAGCTCTTCAGCAAACAACTTAG 1410 |||||| ||| | ||||| |||||| ||| ||| |||||||||| |||||||| |||| Sbjct 889 GGATCAAGAA-GCAACTCAACCCTTAATGGA-TTGGACAGCTCTTCTGCAAACAATTTAG 946 Query 1411 CTGAGCTTGATGTGC-GGAACACTGAGGGGATCAATACCATTGCTGGAGATGTTGTTGGA 1469 ||||||| ||||| | ||||||| ||||| |||||| | | ||||| | Sbjct 947 CTGAGCTGGATGT-CAGGAACACCGAGGGAATCAAT------G--G----TGTTG--G-- 989 Query 1470 GTCGGCGCATCACAGTTAAT-GGTGAATGGTTTCCAACAAACGTCTGCT-CAACAGTCTG 1527 | | | || ||||||| || | | | |||||||||| | ||| | || | |||| Sbjct 990 --C--C-CTTCGCAGTTAACAGGGGTA-GATTTCCAACAATCCTCTA-TACAGTATTCTG 1042 Query 1528 AGTCTATTCCACCAAGCTCATC-GCTTCATTATTCTCAATCTATTCCAC-TGAATGCTGC 1585 ||||| |||||||| ||| | ||| || ||| ||||||||||||||| | |||||||| Sbjct 1043 AGTCTGCTCCACCAACCTCCTTTGCT-CAGTATCCTCAATCTATTCCACAT-AATGCTGC 1100 Query 1586 ATATCAGTTGCAGCAATCTGTTCCGCCAAGCT-CTGCTCTTCATTATCCCCAGTCCATTA 1644 || |||||| |||||| ||||||| |||| | || ||||||| ||| ||||||||| | Sbjct 1101 ATTTCAGTTTCAGCAAGCTGTTCCCCCAAA-TGCTACTCTTCAGTATGCCCAGTCCAAT- 1158 Query 1645 CC-CCAGGTTCCTCTCTTCAGTATCCCCAATCTATTACGCCAGGCTCCTCT-TATCAGTA 1702 || ||| |||| ||| | || ||||| ||||||||| ||| ||| || | |||||| Sbjct 1159 CCACCAAGTTCGTCTATCCACTATCCTCAATCTATTTTACCAAATTCCACTCT-TCAGTA 1217 Query 1703 TCCACAATCCATCATACCTGGTTCTGCCAGCTCCTATGGAATATACCCACAATATTATGG 1762 ||||||||| ||| | | | | | |||| |||||||||||||||||||||||||| Sbjct 1218 TCCACAATCGATC-T-CATC---C-G---GCTCGTATGGAATATACCCACAATATTATGG 1268 > Ahg319179 jgi|Araly1|319179|fgenesh1_pm.C_scaffold_3002195 Length=3369 Score = 327 bits (177), Expect = 3e-88 Identities = 560/742 (75%), Gaps = 38/742 (5%) Strand=Plus/Plus Query 3290 TGGCTTGCAGATCATTAAGAATGAAGATCTTGAGGAGTTGAGGGAGCTTGGTTCTGGTAC 3349 |||||||||||| || ||||| | |||||||| || | | || || || || || || Sbjct 2493 TGGCTTGCAGATAATAAAGAACGCTGATCTTGAAGACCTAACAGAACTGGGATCCGGGAC 2552 Query 3350 TTTTGGAACGGTGTATCATGGGAA-GTGGAGAGGATCAGATGTCGCTATCAAGAGGATAA 3408 | || ||| || |||||| |||| ||| | ||| | ||||| ||||| ||||| || | Sbjct 2553 ATATGAAACTGTCTATCAT-GGAACATGGCGGGGAACGGATGTTGCTATAAAGAGAAT-A 2610 Query 3409 AG-AAGAGTTGCTTTGCTGGGCGGTCATCAGAGCAAGAGA-GATTGACTGGTGA-ATTT- 3464 || || || || ||||| ||| | ||||| || ||||| | | ||||| | | |||| Sbjct 2611 AGAAACAGCTGTTTTGCGGGGAGATCATCTGAACAAGA-ACGCTTGAC--GAAAGATTTC 2667 Query 3465 TGGGGGGAAGCTGAAATTCTTTCAAAGCTTCATCATCCGAACGTGGTAGCATTTTATGGT 3524 ||| ||||||| |||| || ||||| |||||||| || || || || ||||| || ||| Sbjct 2668 TGGAGGGAAGCACAAATACTCTCAAATCTTCATCACCCAAATGTTGTTGCATTCTACGGT 2727 Query 3525 GTTGTAAAAGACGGGCCTGGAGGGACCTTGGCGACTGTGACAGAGTACATGGTTG-ATGG 3583 | || || || ||||||| |||||||| ||||| ||||||| ||||| || |||| Sbjct 2728 ATAGTGCCTGATGGAACTGGAGGAACCTTGGCAACTGTTACAGAGTTCATGG-TGAATGG 2786 Query 3584 TTCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGCAT-CTTGATC-GTCG-TAAGAGACT 3640 || || ||||||| ||| || ||||||||| | ||||| | ||| || ||| | Sbjct 2787 GTCACTCAGGCATGCTCTTCTCAAAAAGGACAGG-TTGCTTGA-CACTCGAAAAAAGA-T 2843 Query 3641 AATCATTGCCATGGATGCTGCATTTGGAATGGAATATTTACACTCCAAAAACACTGTTCA 3700 ||| ||||||||||||||||| ||||| ||||| ||||| ||||| || |||| ||| || Sbjct 2844 AATAATTGCCATGGATGCTGCTTTTGGCATGGAGTATTTGCACTCGAAGAACATTGTCCA 2903 Query 3701 CTTTGATTTGAAATGTGACAATTTACTTGTGAACTTGAA-AGATCCTTC-TCGCCCAATC 3758 ||||||| | ||||| || || |||||||| || || || ||||| | || || || Sbjct 2904 CTTTGATCTCAAATGCGAAAACTTACTTGTCAA-TTTAAGGGATCC-ACAACGGCCTATA 2961 Query 3759 TGCAAGGTTGGTGACT-TTGGTTTGTCAAAAATCAAGA-GAAATACGTTGGTATCTGGTG 3816 |||||||| || || | |||| || || | ||| || | | || || || |||||||| | Sbjct 2962 TGCAAGGTGGGAGA-TCTTGGCTTATCTAGAAT-AAAACGTAACACTTTAGTATCTGGGG 3019 Query 3817 GTGTACGTGGAAC-CTTACCGTGGATGGCACCAGAGCTTC-TAAACGGGAGCAGTAGCAA 3874 | || || ||||| ||| || |||||||| ||||| | || | ||||| ||||| | | Sbjct 3020 GAGTGCGAGGAACACTT-CCATGGATGGCCCCAGAAC-TCTTGAACGGAAGCAGCACCCG 3077 Query 3875 AGTTTCTGA-AAAGGTTGATGTTTTCTC-TTTCGGTATCGT-TCTGTGGGAGATTCTAAC 3931 |||||||| ||| || ||||||||||| | | || ||| | ||||||||||||||||| Sbjct 3078 GGTTTCTGAGAAA-GTCGATGTTTTCTCATAT-GGAATC-TCACTGTGGGAGATTCTAAC 3134 Query 3932 CGGAGAGGAACCATATGCCA-ATATGCACTATGGGGCAATAATAGGTGGGATAGTGAACA 3990 |||||||||||| ||||| | ||||||| | ||| ||||| || || ||||| ||||| | Sbjct 3135 CGGAGAGGAACCTTATGC-AGATATGCATTGTGGAGCAATCATTGGCGGGATCGTGAAGA 3193 Query 3991 ACACACTGAGACCAACCATACC 4012 |||| || |||| ||||||| Sbjct 3194 ACACCCTTCGACCTCCCATACC 3215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 168442818098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5