BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79580.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927381 jgi|Araly1|927381|scaffold_202942.1 1814 0.0
Ahg909593 jgi|Araly1|909593|Al_scaffold_0002_2674 167 2e-40
Ahg332471 jgi|Araly1|332471|fgenesh1_pm.C_scaffold_8001814 100 3e-20
> Ahg927381 jgi|Araly1|927381|scaffold_202942.1
Length=1159
Score = 1814 bits (982), Expect = 0.0
Identities = 1109/1167 (95%), Gaps = 22/1167 (2%)
Strand=Plus/Plus
Query 275 CTTAAAGAAGAGTAAGGATAATGGAGATAGGGTCGTCATCCACGGTGGCTGGCGGAGGAC 334
|||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1 CTTAAAGAAGAGTACGGATAATGGAGATAGGGTCGTCATCCACAGTGGCCGGAGGAGGAC 60
Query 335 AGCTTTCGGTGCCTCCGGGATTCCGGTTTCATCCAACGGAGGAGGAGCTTCTTTACTATT 394
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTTTCTGTGCCTCCGGGATTCCGGTTTCATCCAACGGAGGAGGAGCTTCTTTACTATT 120
Query 395 ACCTCAAGAAGAAGGTTTCTTATGAACCAATTGATTTAGATGTAATTAGAGAAGTTGATC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCTCAAGAAGAAGGTTTCTTATGAACCAATTGATTTAGATGTAATTAGAGAAGTTGATC 180
Query 455 TCAACAAGCTGGAACCTTGGGAACTTAAAGAGAAATGCAGAATCGGGTCGGGTCCTCAAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAACAAGCTGGAACCTTGGGAACTTAAAGAGAAATGCAGAATCGGGTCGGGTCCTCAAA 240
Query 515 ACGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACC 574
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 ACGAGTGGTATTTTTTTAGCCACAAGGACAAGAAATATCCGACTGGGACTAGAACGAACC 300
Query 575 GGGCGACAGCAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTCAACA 634
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGGCGACTGCAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTAAACA 360
Query 635 GCTCCAAGAAGATTGGACTTCGTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTCCAAGAAGATTGGACTTCGTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATG 420
Query 695 GCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTC 754
|||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 421 GCCAAAAAACGGAATGGATCATGCACGAATATCGCTTGGATGATAACGAAAACGAAATTC 480
Query 755 AGGAAGATGGGTGGGTTGTATGCAGAGTGTTCAAGAAGAAGAATCATTTCAGAGGATTTC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGAAGATGGGTGGGTTGTATGCAGAGTGTTCAAGAAGAAGAATCATTTCAGAGGATTTC 540
Query 815 ACCAAGAACAAGAGCAAGatcatcatcatcatca-c-c-aatacataagcaccaacaatg 871
| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 541 ATCAAGAACAAGAGCAAGATCATCATCATCATCATCACCAATACATAAGCACCAACAATG 600
Query 872 atcatgatcaccatcatcacatTGACTCCAATTCAAACAATCATTCTCCTTTGATCCTAC 931
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 601 ATCATGATCACCATCATCACATTGACTCCAATTCAAACAATCAAACTTCTTTGATCCCAC 660
Query 932 ATCCTCTGGATCATCATCACCACCATCATCACATTGGACGACAAATCCACATGCCATTAC 991
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCCTCTAGATCATCATCACCACCATCATCACATTGGACGACAAATCCACATGCCATTAC 720
Query 992 ATGAGTTTGCAAACACTCTGAGCCATGGCTCAATGCATCTACCTCAGCTCTTTAGCCCTG 1051
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGAGTTTGCAAACACTCTGAACCATGGCTCAATGCATCTACCTCAGCTCTTTAGCCCTG 780
Query 1052 ACTCAGCTGCAGCGGCGGCTGCCGCAGCAGCATCAGCCCAACCATTTGTGTCGCCAATCA 1111
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 781 ACTCAGCTGCAGCAGCGGCTGCGGCAGCAGCATCAGCCCAACCGTTTGTGTCATCAATCA 840
Query 1112 ACACTACGGACATTGAATGTTCACAGAATCTACTGAGGTTGACTTCTAACAACAACTATG 1171
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 841 ACACAACAGACATTGAATGCTCACAGAATCTACTGAGGCTGACTTCTAACAACAACTATG 900
Query 1172 GTGGAGACTGGTCGTTTCTGGACAAGCTTCTCACTACAGGCAACATGAATCAGCAACAGC 1231
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GTGGAGACTGGTCGTTTCTGGACAAGCTTCTCACTACAACCAACATGAATCAGCAACA-- 958
Query 1232 AGCAGCAAGTGCAGAACCATCAAGCAAAATGTTTTGGTGACTTGAGTAACAACGATAATA 1291
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AG-------TGCAGAACCATCAAGCAAAATGTTTTGGTGACTTGAGTAACAACGATAATA 1011
Query 1292 ACGATCAGGCTG--A-TCAT--T--T--GGGTAACAACAATGGTGGTTCTTCTTCATCTC 1342
|||| ||||||| | |||| | | |||||||||||||||||||||||| |||||||
Sbjct 1012 ACGACCAGGCTGTTACTCATGATCATTTGGGTAACAACAATGGTGGTTCTTCGTCATCTC 1071
Query 1343 CAGTTAATCAAAGGTTTCCGTTTCACTACTTGGGAAACGACGCTAATCTTCTCAAGTTCC 1402
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1072 CGGTTAATCAAAGGTTTCCGTTTCACTACTTGGGAAACGATGCTAACCTTCTCAAGTTCC 1131
Query 1403 CAAAGTAGATCAATCGGATTTG-TTGA 1428
|||||||||||||||||||||| ||||
Sbjct 1132 CAAAGTAGATCAATCGGATTTGATTGA 1158
> Ahg909593 jgi|Araly1|909593|Al_scaffold_0002_2674
Length=231
Score = 167 bits (90), Expect = 2e-40
Identities = 121/134 (90%), Gaps = 9/134 (7%)
Strand=Plus/Minus
Query 37 TTTTCGTCTT-AAACATCTCTCTATTTTCATTTCTTTTCTTTGATTAC---TTAAGAACA 92
|||||| ||| ||||||||||||||||| ||||||| ||||||||||| |||||| ||
Sbjct 129 TTTTCG-CTTCAAACATCTCTCTATTTTAATTTCTTCTCTTTGATTACTAGTTAAGAGCA 71
Query 93 TGACTAAGTCTCTATCATTAAACCTCTCTTGTTTAAGAAGCAGACAAAGATCGTTCAGTT 152
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 70 TGACTAAGTCTCTATCATCAAACCTCTCTTGTTTAAGAAGCAGACAAAGATCGTTCA-T- 13
Query 153 TGCAGCACCTTCAT 166
||||||||||||
Sbjct 12 --CAGCACCTTCAT 1
> Ahg332471 jgi|Araly1|332471|fgenesh1_pm.C_scaffold_8001814
Length=1050
Score = 100 bits (54), Expect = 3e-20
Identities = 161/211 (76%), Gaps = 13/211 (6%)
Strand=Plus/Plus
Query 520 TGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACCGGGCG 579
|||||||||||||||||||||||||||||||| || |||||||| ||||| || | ||
Sbjct 196 TGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACTGGGACACGAACCAATAGAGCA 255
Query 580 ACAG-CAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTCAACAGCTC 638
|| | | |||| || |||||||| || ||| ||||||| ||||| | ||| | |||
Sbjct 256 ACTGGCT-CCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATATA-CTCGA-AGC-- 310
Query 639 CAAGAAGATTG--GACT-TC-GTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATG 694
|||| | ||| | | | | ||||||||||| || |||| ||| | || || |||
Sbjct 311 -AAGA-GCTTGTTGG-TATGAGGAAGACTCTTGTGTTTTACAAAGGTAGGGCCCCGAATG 367
Query 695 GCCAAAAAACCGAATGGATCATGCACGAATA 725
| || ||| |||| ||||| |||||||||||
Sbjct 368 GTCAGAAATCCGATTGGATAATGCACGAATA 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5