BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79590.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477131 jgi|Araly1|477131|fgenesh2_kg.2__2261__AT1G79590.2 1487 0.0
Ahg471821 jgi|Araly1|471821|fgenesh2_kg.1__1775__AT1G16240.3 701 0.0
> Ahg477131 jgi|Araly1|477131|fgenesh2_kg.2__2261__AT1G79590.2
Length=1200
Score = 1487 bits (805), Expect = 0.0
Identities = 938/1002 (94%), Gaps = 10/1002 (1%)
Strand=Plus/Plus
Query 139 ACAATCACAAATCGCGGTGCATATAGTCTAAAGGGTCAATGGCCTCTTCTTCGGATCCAT 198
||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||
Sbjct 32 ACAATCACAAATCGCGGTGCATAGAATTTAAAGGGTCAATGGCGTCTTCTTCGGATGCAT 91
Query 199 GGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGAGGATATTAATGGCATGATGTCTG 258
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 92 GGATGAGAGAGTACAATGAGGCTTTGAAACTTTCTGAGGATATTAATGGCATGATGTCTG 151
Query 259 AAAGGAATGCCTCCGGGTTAACCGGGCCTGATGCTCAACGTCGTGCCTCTGCAATTCGAA 318
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 AAAGGAATGCGTCAGGGTTAACCGGGCCTGATGCTCAACGTCGTGCCTCTGCAATTCGAA 211
Query 319 GAAAGATCACCATTTTGGGGACTCGATTAGACAGTCTGCAATCCCTTCTTGTCAAGGTTC 378
| |||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||
Sbjct 212 GGAAGATCACCATTTTGGGGACCCGATTAGACAGTTTACAATCCCTTCTTGTGAAAGTTC 271
Query 379 CTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAATCGTCGCAAGGATATGGTTGGGAATT 438
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CTGGGAAGCAGCATGTTTCGGAGAAAGAGATGAATCGTCGCAAGGATATGGTTGGGAATT 331
Query 439 TGAGATCAAAAACAAATCAGGTGGCCTCTGCTTTGAATATGTCAAACTTTGCAAACAGAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TGAGATCAAAAACAAATCAGGTGGCCTCTGCTTTGAATATGTCAAACTTTGCAAACAGAG 391
Query 499 ACAGCTTGTTTGGAACAGATTTAAAGCCGGATGATGCGATAAATAGAGTCTCTGGCATGG 558
|||||||| |||| ||||| ||||||| ||||||||||| || |||||||| |||||||
Sbjct 392 ACAGCTTGCTTGGGCCAGATATAAAGCCAGATGATGCGATCAACAGAGTCTCGGGCATGG 451
Query 559 ACAACCAAGGAATTGTTGTATTTCAACGGCAAGTTATGAGAGAACAAGACGAGGGACTTG 618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACAACCAAGGAATTGTTGGATTTCAACGGCAAGTTATGAGAGAACAAGACGAGGGACTTG 511
Query 619 AGAAGTTGGAGGAAACAGTCATGAGTACCAAACACATTGCTCTCGCTGTTAACGAGGAGC 678
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 512 AGAAGTTGGAGGAAACAGTTATGAGTACTAAACACATTGCTCTCGCTGTCAACGAGGAGC 571
Query 679 TCACCCTGCAGACAAGGCTTATTGATGACTTAGATTACGATGTGGATATCACTGACTCTC 738
|||| |||||||||||||| |||||||||||||||||| | |||||| ||||||||||||
Sbjct 572 TCACTCTGCAGACAAGGCTAATTGATGACTTAGATTACCAGGTGGATGTCACTGACTCTC 631
Query 739 GCTTACGGCGTGTTCAAAAGAGCCTTGCCTTGATGAACAAGAGCATGAAAAGTGGTTGCT 798
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 632 GCTTACGGCGTGTGCAAAAGAGCCTTGCCGTGATGAACAAGAGCATGAAAAGTGGTTGCT 691
Query 799 CATGCATGTCTATGCTCTTGTCTGTGCTTGGAATCGTTGGTCTTGCTCTTGTAATTTGGC 858
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 692 CATGCATGTCGATGCTCTTGTCTGTGCTTGGAATCGTTGGTCTTGCTCTTGTGATTTGGC 751
Query 859 TGCTGGTTAAGTACCTGTAATGCCAATGTGGTGGCAACTTGTGAAAGCTCATCCTTTTCT 918
||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||
Sbjct 752 TGCTGGTTAAGTACCTGTAGTGCCAACAAGGCGGCAACTTGTGAAAGCTCATCCTGTTCT 811
Query 919 CTCAGCCTATCCTCTGTGCTTAATGGTTGTTTTCTATTCCTTCTATCGATTGATTCGT-G 977
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 812 CTCAGCCTCTCCTCTGTGCTTAATGGTTGTTTTCTATTCCTTCTTTCGATTGATTCTTCG 871
Query 978 TCTGTGAGGCAAAGAAGAATACCACTGCGTGTAAGAAACCCTCAGAAGTACATAATCTGT 1037
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 872 TCTGTGAGGCAAAGAAGAATACCACTGCTTGTAAGAAACCTTAAGAAGTACATAATCTGT 931
Query 1038 ATTACCTTCGTATCAACCACGAATTGTAAACTAAGTTGACATTTGTCTATATATGGTATG 1097
||||||||||||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct 932 ATTACCTTCGTATTGTCCACGAATTGTAAAGTAAGTT----T--GTCTATATATGGTATG 985
Query 1098 GCTCCTACTTGGTTCAATAAAGAGAACTAGTGGCTTGGACAA 1139
|||||||||| | |||| |||||||||||||||| ||||||
Sbjct 986 GCTCCTACTT--T-CAATTAAGAGAACTAGTGGCTAGGACAA 1024
> Ahg471821 jgi|Araly1|471821|fgenesh2_kg.1__1775__AT1G16240.3
Length=1024
Score = 701 bits (379), Expect = 0.0
Identities = 607/716 (85%), Gaps = 19/716 (3%)
Strand=Plus/Plus
Query 176 AATGGCCTCTTCTTCGGATCCATGGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGA 235
|||||| ||||| |||||| ||||||||||||| ||||| || ||||| |||||||||||
Sbjct 148 AATGGCGTCTTCGTCGGATTCATGGATGAGAGAATACAACGATGCTTTAAAACTCTCTGA 207
Query 236 GGATATTAATGGCATGATGTCTGAAAGGAA-TGCCTCCGGGT-TAACCGGGCCTGATGCT 293
||| |||||||| ||||| || |||| ||| | | | ||| | | || ||||||||||||
Sbjct 208 GGAGATTAATGGAATGATATCAGAAA-GAAGTTCAT-CGGCTGTCACAGGGCCTGATGCT 265
Query 294 CAACGTCGTGCCTCTGCAATTCGAAGAAAGATCACCATTTTGGGGACTCGATTAGACAGT 353
|| |||||||| || || || ||||| |||||||||||||| || || ||||||||||||
Sbjct 266 CAGCGTCGTGCTTCAGCTATACGAAGGAAGATCACCATTTTCGGTACCCGATTAGACAGT 325
Query 354 CTGCAATCCCTTCTTG-TCAAGGTTCCTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAA 412
||||| || ||||||| |||| ||| ||| || | | | |||| ||||||||||||||
Sbjct 326 CTGCAGTCTCTTCTTGCTCAA-ATTCATGG-AA--AACCTATTTCTGAGAAAGAGATGAA 381
Query 413 TCGTCGCAAGGATATGGTTGGGAATTTGAGATCAAAAACAAATCAGGTGGCCTCTGCTTT 472
||| |||||||||||||| |||||||||||||||||| |||| ||| |||| ||||||
Sbjct 382 TCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGCAAACCAGATGGCGAATGCTTT 441
Query 473 GAATATGTCAAACTTTGCAAACAGAGACAGCTTGTTTGGAACAGATTTAAAGCCGGATGA 532
||| |||||||||||||| || |||||||||||| |||| |||| |||||||||||||
Sbjct 442 GAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGGGCCAGAAATAAAGCCGGATGA 501
Query 533 TGCGATAAATAGAGTCT-CTGGCATGGACAACCAAGGAATTGTT-GTATTTCAACGGCAA 590
| | || | ||||| | |||||||||| ||||| ||||||||| || | |||||| |||
Sbjct 502 TTCCATGAGCAGAGT-TACTGGCATGGATAACCAGGGAATTGTTGGT-TATCAACGACAA 559
Query 591 GTTATGAGAGAACAAGACGAGGGACTTGAG-AAGTTGGAGGAAACAGTCATGAGTACCAA 649
|||||||||||||||||||| ||||||||| || ||||||| |||||||||||| || ||
Sbjct 560 GTTATGAGAGAACAAGACGAAGGACTTGAGCAA-TTGGAGGGAACAGTCATGAGCACAAA 618
Query 650 ACACATTGCTCTCGCTGTTAACGAGGAGCTCACCCTGCAGACAAGGCTTATTGATGACTT 709
|||||||||||| ||||||| || ||||| | | |||||||||||||||||||||||||
Sbjct 619 ACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGACAAGGCTTATTGATGACTT 678
Query 710 AGATTACGATGTGGATATCACTGACTCTCGCTTACGGCGTGTTCAAAAGAGCCTTGCCT- 768
||||||| |||||||| |||||||||||||||||||| ||| || ||||||||||| |
Sbjct 679 AGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAGTG--CAGAAGAGCCTTGC-TG 735
Query 769 TGATGAACAAGAGCATGAAAAGTGGTTGCTCATGCATGTCTATGCTCTTGTCTGTGCTTG 828
| |||||||||| |||| |||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 736 TCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAATGCTCTTGTCAGTGCTGG 795
Query 829 GAATCGTTGGTCTTGCTCTTGTAATTTGGCTGCTGGTTAAGTACCTGTAATGCCAA 884
| || || ||||||||| ||||||| ||| || |||||||||| ||||||| ||||
Sbjct 796 GGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTATCTGTAATACCAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5