BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79600.1
Length=2490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477133 jgi|Araly1|477133|fgenesh2_kg.2__2263__AT1G79600.1 3696 0.0
> Ahg477133 jgi|Araly1|477133|fgenesh2_kg.2__2263__AT1G79600.1
Length=2351
Score = 3696 bits (2001), Expect = 0.0
Identities = 2258/2377 (95%), Gaps = 37/2377 (2%)
Strand=Plus/Plus
Query 70 tcttctttcATGGCTGTTACTGGCTGGGCAATCACAATCTGAATTCTTTCTTCCTCCTTG 129
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 TCTTCTTTCATGGCTGTTACTGGCTGGGCAATCACAATCTGAATTCTTTCTTATTTC-T- 58
Query 130 TCTCTCTGAT-TTTCGCCGAGTTTTGGGGGCTCTTGTTGTTACACGATGAGTCTGGTGGT 188
||| ||| | | || | || |||| | | | ||||||||||||| || |||||
Sbjct 59 TCTTTCT--TCTCTCTCTGA-TTTT-----CGC--GGAGTTACACGATGAGCCTCGTGGT 108
Query 189 TGGTCAGTCTCTGGGTTTAACTCTAGTCGGTGATGGTCTTTCGTTACGCAATTCCAAAAT 248
||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 109 TGGTCAGTCGCTGGGTTTAACACTAGTCGGTGATGGTCTTTCGTTACGCAGTTCGAAAAG 168
Query 249 AAATGTCGGAAAATCAAAGTTTTTCTCGGTAAATCGGAGGAGATTGGCGCGTGCGGCCCT 308
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 169 AAATGTCGGAAAATCCAAGTTTTTCTCAGTCAATCGGAGGAGATTGGCGCGTGCGGCTCT 228
Query 309 GGTACAAGCTAGGCCTAAGGAAGACGGAGCGGCGGCAAGTCCTTCCCCATCGTCGAGACC 368
||| |||||||||||||||||||| ||| ||||| | || || | | | | |
Sbjct 229 GGTTCAAGCTAGGCCTAAGGAAGATGGA---GCGGC-A-TCGAGACCGA-C-T----A-C 276
Query 369 GGCGTCAGTTGTGCAGTACCGACGAGCTGATCTCGCGGATGATCTTCAAGCCGAGGCACG 428
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 277 GGCGTCCGTTGTGCAGTACCGACGAGCTGATCTCGCGGATGATCTTCAAGCTGAGGCACG 336
Query 429 AGCTTTGGGTCGTGCTATTGATGCTTCTATTTACTCTCCGGAGCTCATCGCCAGGAAACA 488
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 337 AGCTTTGGGTCGTGCTGTTGATGCTTCTATTTATTCTCCGGAGCTCATCGCCAGGAAACA 396
Query 489 TGGCTCTCAGCCTTTCAAGGCTTTGCGGAGAAGTTTGGAGATATTGGGAGCTTTGGGTGG 548
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 397 TGGCTCTCAGCCTTTCAAGGCTTTGCGGAGAAGTTTGGAGATATTGGGAGCTCTGGGTGG 456
Query 549 TTTCGCTTTGAAATTGGGGATTGACCAGAAGCAGGGCAACTTAGAGAAGAACATGAAGAA 608
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 457 CTTCGCTTTGAAATTGGGGATTGATCAGAAGCAAGGCAACTTAGAGAAGAACATGAAGAA 516
Query 609 GAGAGC-AATCGAGCTCCGGCGGATCTTCACTCGTCTCGGACCTACTTTTGTTAAATTGG 667
|||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 517 GAGAGCTGGT-GAGCTCCGTCGGATTTTCACTCGTCTCGGACCTACTTTTGTTAAATTGG 575
Query 668 GTCAAGGTTTGTCCACCCGACCCGACCTCTGTCCACCCGATTACCTTGAAGAACTTGCAG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GTCAAGGTTTGTCCACCCGACCCGACCTCTGTCCACCCGATTACCTTGAAGAACTTGCAG 635
Query 728 AGCTTCAGGATGCTTTGCCAACCTTCCCTGATGCAGAGGCATTTGCTTGCATTGAGAGAG 787
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 636 AGCTTCAGGATGCTTTGCCAACCTTCCCTGATGCAGAGGCATTCGCTTGCATTGAGAGAG 695
Query 788 AGTTGGATTTGTCGCTAGAGACCATTTTCTCGTCTGTATCTCCTGAGCCAATCGCAGCAG 847
| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 696 ACTTGGATTTGTCTCTAGAGTCCATTTTCTCGTCTGTATCCCCTGAGCCAATCGCAGCAG 755
Query 848 CTAGTCTTGGCCAGGTTTACAAAGCTCAGCTGAGGTATTCAGGTCAGGTTGTTGCTGTCA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CTAGTCTTGGCCAGGTTTACAAAGCTCAGCTGAGGTATTCAGGTCAGGTTGTTGCTGTCA 815
Query 908 AAGTTCAACGCCCTGGGATCGAAGAAGCCATTGGCCTTGATTTTTACCTTATTAGAGGAG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AAGTTCAACGCCCTGGGATCGAAGAAGCCATTGGCCTTGATTTTTACCTTATTAGAGGAG 875
Query 968 TTGGGAAACTCATTAACAAGTATGTAGACTTCATCACTACCGATGTCCTTACCCTTATCG 1027
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 876 TTGGAAAACTCATTAACAAGTATGTAGACTTCATCACTACTGATGTCCTTACCCTTATCG 935
Query 1028 ATGAGTTCGCCTGCAGAGTTTATCAGGAGCTAAACTATGTCCAGGAGGCCCAAAATGCCA 1087
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATGAGTTTGCCTGCAGAGTTTATCAGGAGCTAAACTATGTCCAGGAGGCCCAAAATGCCA 995
Query 1088 GAAGGTTTAAAAAA-TTGTATGCAGATAAAGCAGATGTTCTTGTGCCTGATATATTCTGG 1146
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 996 GAAGGTTTAAAAAACTT-TATGCTGATAAAGCAGATGTTCTTGTTCCTGATATATTCTGG 1054
Query 1147 GATTACACGAGCCGCAAGGTGCTAACAATGGAATGGGTTGAGGGAACTAAACTGAATGAG 1206
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GATTACACGAGCCGCAAGGTTCTAACAATGGAATGGGTTGAGGGAACTAAACTGAATGAG 1114
Query 1207 CAACTTGCCATTGAGAGTCAGGGATTGAAGGTTCTGGATCTCGTGAATACAGGAATCCAG 1266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 CAACTTGCCATTGAGAGTCAGGGATTGAAGGTTCTGGATCTCGTGAATACAGGAATCCAA 1174
Query 1267 TGTAGCCTAAGGCAACTCTTGGAGTATGGCTTTTTCCATGCTGACCCTCATCCTGGTAAT 1326
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGTAGCCTAAGACAACTCTTGGAGTATGGCTTTTTCCATGCTGACCCTCATCCTGGTAAT 1234
Query 1327 CTCTTGGCAACACCTGATGGAAAACTTGCCTTTCTAGACTTTGGCATGATGAGTGAGACA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CTCTTGGCAACACCTGATGGAAAACTTGCCTTTCTAGACTTTGGCATGATGAGTGAGACA 1294
Query 1387 CCAGAGGAAGCTAGATTTGCTATCATAGGCCATGTTGTCCATTTAGTGAACCGAGATTAT 1446
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1295 CCAGAGGAAGCTAGATTTGCAATCATAGGTCATGTTGTCCATTTAGTGAACCGAGATTAT 1354
Query 1447 GAAGCCATGGCACGAGATTACTATGCTCTGAAGTTCTTGTCCCCTGATGTGGATGTTACT 1506
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1355 GAAGCCATGGCCCGAGATTACTATGCTCTGAAGTTCTTGTCTCCTGATGTGGATGTTACT 1414
Query 1507 CCTATCATACCAGCTCTCAGAGACTTCTTTGACGATGCACTTAATTATACCGTGAGCGAG 1566
|| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1415 CCCATCGTACCAGCTCTCAGAGACTTCTTTGACGATGCACTTAATTATACAGTGAGCGAG 1474
Query 1567 CTCAATTTCAAAACTTTGGTTGATGGTCTAGGTGCTGTCTTCTACCAGTATCCATTTAAT 1626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1475 CTCAATTTCAAAACTTTGGTTGATGGTCTAGGTGCTGTCTTCTACCAGTATCCATTCAAT 1534
Query 1627 GTCCCGCCCTACTATGCTTTGATTTTGAGGTCGCTTACTGTGCTTGAAGGTTTGGCACTC 1686
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1535 GTCCCGGCCTACTATGCTTTGATTTTGAGGTCGCTTACTGTACTTGAAGGTTTGGCACTT 1594
Query 1687 TACGCAGATCCTAATTTCAAAGTACTAGCTGCTTCATACCCATATTTTGCCAAAAGGCTT 1746
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1595 TACGCAGATCCTAATTTCAAAGTGCTAGCTGCTTCATACCCATATTTTGCCAAAAGGCTT 1654
Query 1747 CTCACTGATCCAAACCCGTATCTAAGAGATGCCCTTATCGAGCTACTATTCAAAGACGGA 1806
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1655 CTCACTGATCCAAACCCGTATCTAAGAGATGCCCTTATCGAGCTTCTATTCAAAGATGGA 1714
Query 1807 AAATTTAGGTGGAATAGACTCGAGAACCTTCTACAACAGGGAAGTAAAGATAGAGACTTC 1866
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 AAATTTAGATGGAATAGACTCGAGAACCTTCTACAACAGGGAAGTAAAGATAGAGACTTC 1774
Query 1867 TCAGCAAAGGATGCTCTACAACCAGTTTTGAAGCTTTTGCTGGATCCAAATGGCGAAGAA 1926
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1775 TCAGCAAAGGATGCTCTACAACCAGTTTTGAAGCTGTTGCTGGATCCAAATGGTGAAGAG 1834
Query 1927 CTTCGATTGTTAGTAATTAAAGAAGCTGTACGAGTCAGTGAAGCAATTGCGCTGGGCACT 1986
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CTTCGACTGTTAGTAATTAAGGAAGCTGTACGAGTCAGTGAAGCAATTGCGCTGGGCACT 1894
Query 1987 GTTGTTGATACATACAATTCCCTTCCTGAGTTTCTGAGATCTCTTGTCTTCAATGGAAAT 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 GTTGTTGATACATACAATTCCCTTCCTGAGTTTCTGAGATCTCTTGTCTTCAATGGAAAT 1954
Query 2047 GGGAATGGCCCTCTTACAATGAGTACCGCGGAACTTCAAAGTACGCTTGAGCTTCGGGAT 2106
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1955 GGAAATGGCCCTCTTACAATGAGTACCACGGAACTTCAAAGCACGCTTGAGCTTCGGGAT 2014
Query 2107 CAGGTCTCCAGAATCTGGGGCCTTCTTCAATCTTCAGAAAGCTTTGATCCTGCTATTTTG 2166
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 CAGGTCTCTAGAATCTGGGGCCTTCTTCAATCTTCAGAAAGCTTTGATCCTGCTATTTTG 2074
Query 2167 CAACCAATACTACAGGTGTTACAACAACCAGAGGCACGAAGACTTGGAGGACGTGTTGCA 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 CAACCAATACTACAGGTGTTACAACAACCAGAGGCACGAAGACTTGGAGGACGTGTTGCA 2134
Query 2227 GGCGGTGTAGGCCAACGTCTTGCAGCTCGGTTTCTGCAACAACTTCTTCGAGCCACAACA 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 GGCGGTGTAGGCCAACGTCTTGCAGCTCGGTTTCTGCAACAACTTCTTCGAGCCACAACA 2194
Query 2287 CCATCTTCTGCACCATCCCCATAGGTCCTCTTTTCTTCTCAGTGAAATGGTAAATTGTAT 2346
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2195 CCATCTTCGGCACCAACCCCATAGGTCCTCTTTTCTTCTCAGTGAAATGGTAAATTGTAT 2254
Query 2347 ATTAAGGCGAGACACTCGCAAACCACAGAATTGTTTCATGTTACAGT-A-A-TA-TA--G 2400
||||||||||||||||||||||||||||||||| ||||||||| ||| | | || || |
Sbjct 2255 ATTAAGGCGAGACACTCGCAAACCACAGAATTGCTTCATGTTATAGTTATAGTAATATAG 2314
Query 2401 TATCATTCTTTCTCTTTGTATTGT-ACTAGTGAAAAA 2436
||||||||||||||||||||| || |||||| |||||
Sbjct 2315 TATCATTCTTTCTCTTTGTAT-GTTACTAGTAAAAAA 2350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93854363680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5