BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79630.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477137 jgi|Araly1|477137|fgenesh2_kg.2__2267__AT1G79630.1 2658 0.0
Ahg334901 jgi|Araly1|334901|fgenesh1_pg.C_scaffold_1001466 671 0.0
> Ahg477137 jgi|Araly1|477137|fgenesh2_kg.2__2267__AT1G79630.1
Length=1876
Score = 2658 bits (1439), Expect = 0.0
Identities = 1658/1761 (94%), Gaps = 26/1761 (1%)
Strand=Plus/Plus
Query 190 CAACCCCCAGAAAAATCGTAGATTTCTTCAATCGGCGatttaaaaaatttgaactttttc 249
|||||||| |||| ||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 131 CAACCCCCGGAAATATCGTGGATTTCTTCGATCGGCGATTTCAAAAATTTGAACTTTTTT 190
Query 250 tttaaaagctttgagctcttttttcttcggattattttcaaaaTGGGTCTGTGTTATTCA 309
||| | ||| |||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 191 TTTTAGAGCGTTGAGCTC---TTTCTTCGGAAGATTTTCAAAATGGGTCTGTGTTACTCA 247
Query 310 GTAGATAGGACTACTGGGAAGGAACCTGGAGAAGCAAGCTCCACCGCCACTACGGCGGAG 369
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| | |
Sbjct 248 GTAGATAGGACTACTGGGAAGGAACCTGGAGAAACGAGCACCACCGCCACTACGGC-G-G 305
Query 370 ACTGTGGAGGAGAGATCAGGCTCCGGAAGATGGCGGCGGCCGAGAGATTTAAAGGGTGGC 429
|| ||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 306 AC-------GAGAGATTAGGCTCCGGAAGATGGCGGCGGCCTAGAGATTTAAAGGGCGGC 358
Query 430 GGCGATATCGAAGGGATTCCACAGGTTTTGGGTCGTTTGGTTTCGAATGGTTCAAGTAAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGCGATATCGAAGGGATTCCACAGGTTTTGGGTCGTTTGGTTTCGAATGGTTCAAGTAAG 418
Query 490 ATTGCATGTCTTTACACACAGCAAGGCAAGAAAGGGACTAACCAAGACGCCATGCTCGTC 549
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 ATTGCATGTCTTTACACACAGCAAGGCAAGAAAGGAACTAACCAAGACGCCATGCTCGTC 478
Query 550 TTTGAGAACTTTTGTTCGAGAGACGATACAGTGTTTTGTGGTGTATTCGATGGACATGGA 609
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTGAGAACTTTTGTTCCAGAGACGATACAGTGTTTTGTGGTGTATTCGATGGACATGGA 538
Query 610 CCATTTGGTCATATGGTTGCCAAGAAAGTCCGAGATACATTGCCCTTCACACTCTTAACC 669
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CCATTTGGTCATATGGTTGCGAAGAAAGTCCGAGATACATTGCCCTTCACACTCTCAACC 598
Query 670 CAGTTGAAAATGACCTCAGAGTCAGATCAAAGCAGCTTAGTTGGTGCCAATGGTTTTCAG 729
|||||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||
Sbjct 599 CAGTTGAAAACGACCTCAGAGTCAGACCAAAACGGCTTAGTTGGTGCGAATGGTTTTCAG 658
Query 730 ATCAAATGTACAGAGGAAGAAGAAGTGCAGACAACTGAGTCTGAACAAGTGCAGAAAACT 789
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 659 ATCAAATGTACAGAGGAAGAGGAAATGCAGACAACTGAGTCTGAAGAAGTGCAGAAAACT 718
Query 790 GAGTCTGTTACTACTATGGATGAGCAATGGTGTGAGTTAAATCCAAATGTGAACAACGAT 849
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 GAGTCTGTTACTACTATGGATGAGCAATGGTGTGAGTTAAATCCAAATGAGAACAACGAT 778
Query 850 GAACTTCCGGAGATGTATCTGCCTCTTAAACATGCGATGCTCAAGTCTTGTCAGCAGATA 909
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 779 GAACTTCCGGAGATGTATCTGCCTCTTAAACATGCGTTGCTTAAGTCTTGTCAGCAGATA 838
Query 910 GATAAAGAGCTGAAAATGCATCCAACTATTGATTGCTTCTGCAGCGGAACAACTTCAGTC 969
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 GATAAAGAGCTGAAAATGCATCCAACTATTGATTGCTTCTGCAGTGGAACAACTTCAGTC 898
Query 970 ACTTTGATCAAGCAGGGTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTTTGATCAAGCAGGGTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTT 958
Query 1030 CTTGCCACAAGAGACGAAGACAATGCTTTGCTCGCTGTACAATTAACTATAGACTTAAAA 1089
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 959 CTTGCCACGAGAGACGAAGACAATGCTTTGCTCGCTGTACAATTAACTGTGGACTTAAAA 1018
Query 1090 CCGGATTTGCCAGGTGAATCAGCGAGAATCCAGAAATGTAAAGGAAGAGTCTTTGCATTG 1149
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CCAGATTTGCCAGGTGAATCAGCGAGAATCCAGAAATATAAAGGAAGAGTCTTTGCATTG 1078
Query 1150 CAAGACGAGCCTGAGGTAGCTCGTGTATGGTTACCAAACAGTGATTCACCTGGTTTAGCA 1209
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 CAAGACGAGCCTGAGGTAGCTCGTGTATGGTTACCAAACAGCGATTCACCTGGTTTAGCA 1138
Query 1210 ATGGCTCGAGCTTTTGGAGACTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGAT 1269
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATGGCTCGAGCTTTTGGAGATTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGAT 1198
Query 1270 ATCAACTATCGCCGCCTAACGGAACGAGACCAATTCATTATTCTTGCTAGCGACGGGGTA 1329
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1199 ATCAACTACCGCCGCCTAACCGAACGAGACCAATTCATTATTCTTGCTAGTGACGGGGTA 1258
Query 1330 TGGGATGTGTTGTCGAACAAAGAAGCTGTTGATATCGTTGCCTCAGCTCCTAGTAGAAGC 1389
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| |
Sbjct 1259 TGGGATGTGTTGTCGAATAAAGAAGCTGTTGATATTGTTGCTTCAGCTCCTAGTCGAAAC 1318
Query 1390 ACAGCGGCTCGAGCTCTAGTGGACACAGCGGTACGATCATGGAGAATCAAGTACCCAACT 1449
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1319 ACAGCGGCTCGAGCTCTAGTGGACACAGCGGTTCGATCATGGAGAATCAAGTACCCAACT 1378
Query 1450 TCCAAGAACGATGACTGTACAGTAGTCTGTCTCTTTCTACAAGATTCATCAGTAGCCATG 1509
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 TCCAAGAACGATGACTGTACTGTAGTCTGCCTCTTTCTACAAGATTCATCAGTAGCCATG 1438
Query 1510 GAAGTCTCAACCAATGTAAAGAAGGATTCACCCAAAGAAGAGTCTATAGAGAGTGTCACT 1569
||||| |||| |||||||| |||| |||||| |||||||||||| ||||||||||||| |
Sbjct 1439 GAAGTTTCAAGCAATGTAATGAAGCATTCACACAAAGAAGAGTCCATAGAGAGTGTCAGT 1498
Query 1570 AACAGCACAAGCAAGGAGGAGGATGAGATTGTCCCCGTTAAAGACGAGAAAATCCCTG-A 1628
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1499 AACAGTACAAGCAAGGAGGAGGATGAGATTGTCCCCGTTAAAGACGAGAAAATCCCTGCA 1558
Query 1629 GAGTTGCGGGATTGAGTCGAAAATGATGACAATGACACTTGCGGAATGTATCTCGGTTGC 1688
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1559 G-GTTGCGGGATTGAGTCGAAGATGATGACAATGACACTTGCGGAATGTATCTCGGTTGC 1617
Query 1689 ACAAGATGATGAAGAGTGGTCTGCTTTGGAAGGATTGACGAGGGTTAACAGTCTCTTGAG 1748
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1618 ACAGGATGATGAAGAGTGGTCTGCTTTGGAAGGATTGACAAGGGTTAACAGTCTATTGAG 1677
Query 1749 CATTCCAAGGTTTTTATCTGGTGAGCTCAGATCAACTAGTTGGAGAAAATGGTTGTGACt 1808
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1678 CATTCCAAGGTTCTTATCTGGTGAGCTTAGATCAACTAGTTGGAGAAAATGGTTGTGACT 1737
Query 1809 tttttttGACTTAAGTGATTCTAAGTTAATGCCGACAAAAACACT-TC-ATATCACGATG 1866
|||||||||||| ||||||||||||||| ||| ||||| |||| | |||||||||||
Sbjct 1738 TTTTTTTGACTTGTGTGATTCTAAGTTAAAGCCCACAAATACACAATGGATATCACGATG 1797
Query 1867 TTCCAACt-ttttttCTTCTT----CT---CTTGGAAGTGATTTGCAGATATATAATCTT 1918
|||||||| |||||| || || || ||||||||| ||||||||||||||||||||
Sbjct 1798 TTCCAACTCTTTTTTTTTTTTTTTTCTTTTCTTGGAAGTTATTTGCAGATATATAATCTT 1857
Query 1919 TCTTGTTTAAATTAGTCTTTC 1939
| | |||| ||||||||||||
Sbjct 1858 T-T-GTTTCAATTAGTCTTTC 1876
Score = 189 bits (102), Expect = 7e-47
Identities = 124/134 (93%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 22 CCCGAGAAAATAAACCAGAGGTCCCTAAAGCTAAAGCTAAAACTAAAAGCTAAAGTAGTG 81
||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCGAGAAAAT--AGCAG-TTTTCCTAAAGCTAAAGCTAAAACTAAAAGCTAAAGTAGTG 57
Query 82 TGGAttttctagatgccaagtttcgttttttgagcctttt-aagctcttttctggatttc 140
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 58 TGGATTTTCTAGATGCCAAGTTTCGGTTTTTGAGCCTTTTTAAGCTCTTTTCTGGTTTTC 117
Query 141 gtttttctcgtttc 154
||||||||||||||
Sbjct 118 GTTTTTCTCGTTTC 131
> Ahg334901 jgi|Araly1|334901|fgenesh1_pg.C_scaffold_1001466
Length=1476
Score = 671 bits (363), Expect = 0.0
Identities = 578/683 (85%), Gaps = 9/683 (1%)
Strand=Plus/Plus
Query 811 GAGCAATGGTGTGAGTTAAATCCAAATGTGAACAACG--ATG-AACTTCCGGAGATGTAT 867
||||| |||| ||||||| | || || | ||| ||| | | ||||||||||||||||
Sbjct 448 GAGCAGTGGTTTGAGTTACAGCCGAACGAGAAGGACGAAAAGCTACTTCCGGAGATGTAT 507
Query 868 CTGCCTC-TT-AAACATGCGATGCTCAAGTCTTGTCAGCAGATAGATAAAGAGCTGAAAA 925
|| || | || || | || |||||||| ||||||| ||||| |||| |||| | ||||
Sbjct 508 CT-CC-CGTTGAAGCGGGCTTTGCTCAAGACTTGTCAACAGATGGATAGAGAGTTAAAAA 565
Query 926 TGCATCCAACTATTGATTGCTTCTGCAGCGGAACAACTTCAGTCACTTTGATCAAGCAGG 985
|||||||||| || |||| |||||||||||||| ||||| |||||| ||||||| ||||
Sbjct 566 TGCATCCAACCATCAATTGTTTCTGCAGCGGAACTACTTCTGTCACTGTGATCAAACAGG 625
Query 986 GTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTTCTTGCCACAAGAGACG 1045
|| | ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 626 GTAAAGATCTGGTGGTGGGAAATATTGGTGACTCGAGAGCTGTTCTTGCCACAAGAGACC 685
Query 1046 AAGACAATGCTTTGCTCGCTGTACAATTAACTATAGACTTAAAACCGGATTTGCCAGGTG 1105
|||||||||||||| ||||||||| ||| || |||||||||||||| ||||||||| |||
Sbjct 686 AAGACAATGCTTTGGTCGCTGTACCATTGACCATAGACTTAAAACCCGATTTGCCAAGTG 745
Query 1106 AATCAGCGAGAATCCAGAAATGTAAAGGAAGAGTCTTTGCATTGCAAGACGAGCCTGAGG 1165
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 746 AATCAGCAAGAATCCATAAATGTAAAGGTAGAGTGTTTGCCTTACAAGACGAGCCTGAGG 805
Query 1166 TAGCTCGTGTATGGTTACCAAACAGTGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 1225
| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 806 TTGCGCGTGTGTGGTTACCGAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 865
Query 1226 GAGACTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGATATCAACTATCGCCGCC 1285
| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||| | ||||
Sbjct 866 GGGACTTCTGTCTTAAAGATTACGGGCTAATCTCTGTTCCGGATATCAACTACCATCGCC 925
Query 1286 TAACGGAACGAGACCAATTCATTATTCTTGCTAGC-GACGGGGTATGGGATGTGTTGTCG 1344
| || ||| |||| || || |||||||| || | | || |||||||||||||| ||||||
Sbjct 926 TCACTGAAAGAGATCAGTTTATTATTCTAGCCA-CAGATGGGGTATGGGATGTTTTGTCG 984
Query 1345 AACAAAGAAGCTGTTGATATCGTTGCCTCAGCTCCTAGTAGAAGCACAGCGGCTCGAGCT 1404
|| ||||||||||||||||| || || |||||||||||| ||| ||| || ||||| |||
Sbjct 985 AATAAAGAAGCTGTTGATATTGTGGCTTCAGCTCCTAGTCGAAACACTGCAGCTCGTGCT 1044
Query 1405 CTAGTGGACACAGCGGTACGATCATGGAGAATCAAGTACCCAACTTCCAAGAACGATGAC 1464
|||| |||||||| || ||| ||||||| ||||||| || |||||||||||||| ||
Sbjct 1045 GTAGTCGACACAGCAGTTCGAGCATGGAGGCTCAAGTATCCTACTTCCAAGAACGACGAT 1104
Query 1465 TGTACAGTAGTCTGTCTCTTTCT 1487
||| | || || |||||||||||
Sbjct 1105 TGTGCTGTTGTATGTCTCTTTCT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5