BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79650.4
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890 1216 0.0
Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379 680 0.0
> Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890
Length=1098
Score = 1216 bits (658), Expect = 0.0
Identities = 706/730 (97%), Gaps = 0/730 (0%)
Strand=Plus/Plus
Query 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 369 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTGGTTAGTGGCAGTAGTCTTGA 428
Query 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 ACAAATGGTCCAACAGATAATGGAAATGGGAGGCGGAAGTTGGGACAAAGAAACAGTTAC 488
Query 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 489 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATCTGTACTCTGG 548
Query 788 AATTCCTCAAACTGCTGAAGTAGCTGTGCCAGTACCTGAGGCTCAGATTGCAGGATCCGG 847
||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 549 AATTCCTGAAACTGCTGAAGTAGCTGTGGCAGTACCTGGGGCTCAGATGGCAGGATCCGG 608
Query 848 TGCAGCCCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 907
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGCAGCCCCTGTCGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 668
Query 908 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAA 967
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 669 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGTGATCTCGGGACACTTGAATTTCTTAGAAA 728
Query 968 CAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGCC 1027
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 729 CAATGACCAGTTCCAACAATTACGCACCATGGTCCACTCCAACCCTCAAATTCTTCAGCC 788
Query 1028 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 848
Query 1088 GGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGGGGACAT 1147
|||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||
Sbjct 849 GGCAGAGTTTCTTCAGTTAGTAAACGAGCCCTATGAGGGATCTGACGGGGATGCGGACAT 908
Query 1148 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAACAAGA 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 909 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAGCAAGA 968
Query 1208 AGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCGTTCCT 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 969 GGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCCTTCCT 1028
Query 1268 CGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGTGACTT 1327
|||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1029 CGCATGTGACCGTAACGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGAGATTT 1088
Query 1328 TGAAGACTGA 1337
||||||||||
Sbjct 1089 TGAAGACTGA 1098
Score = 492 bits (266), Expect = 4e-138
Identities = 348/384 (91%), Gaps = 20/384 (5%)
Strand=Plus/Plus
Query 150 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTTTACCCTCC 209
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTCTACCCTCC 60
Query 210 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAGACAATTATCCA 269
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAAACAATTATCCA 120
Query 270 TGTGGGCAGCAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTG 329
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGGCCAACAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTC 180
Query 330 GAGAACAAAGTTACGGAGGAAGGATTTCTCGTCGTTATGCTTAGCAAGAGCAAATCTGGA 389
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 181 GAGAACAAGGTTACCGAGGAAGGCTTTCTCGTCGTTATGCTTAGCAAGAGCAAAACTGCA 240
Query 390 GGTTCAGCTGGTCAGGCTTCGGTTCAGACTTCTTCTGTTTCACAGCCTGTTTCCGCTACC 449
||||||||||||||| ||||||||||| | | | || | | ||||||||
Sbjct 241 GGTTCAGCTGGTCAGTCTTCGGTTCAG-C--C----G-------GC-T-T--CCGCTACC 282
Query 450 ACATCTTCGACTAAGCCTGCAGCTCCATCTACAACCCAGTCT-TCACCTGTTCCTGCTTC 508
||||||||||||||||||| | | |||||||||||||||||| | | |||| ||||||||
Sbjct 283 ACATCTTCGACTAAGCCTGAAACACCATCTACAACCCAGTCTAT-AGCTGTGCCTGCTTC 341
Query 509 ACCTATTCCTGCTCAAGAACAACC 532
||||||||||||||||||||||||
Sbjct 342 ACCTATTCCTGCTCAAGAACAACC 365
> Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379
Length=1095
Score = 680 bits (368), Expect = 0.0
Identities = 618/738 (84%), Gaps = 19/738 (3%)
Strand=Plus/Plus
Query 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667
|||||| | |||||||||||| |||||||| ||||| ||||||||||| |||||| ||||
Sbjct 369 GGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTTAGTTAGTGGCAGTAGTGTTGA 428
Query 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727
||| ||||| ||||| |||||||||||||| || || || ||||||||||||||||||||
Sbjct 429 GCAGATGGTACAACAAATAATGGAAATGGGGGGAGGCAGCTGGGACAAAGAAACAGTTAC 488
Query 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787
|||||||||||||||||| |||||||| ||||||||||||||||||||| | || |||||
Sbjct 489 TCGTGCACTTCGTGCAGCGTATAACAATCCTGAGAGAGCAGTGGATTATCTATATTCTGG 548
Query 788 AATTCCTC-AAACTGCTGAAGTAGCTGTGCCAGTACCTGA-GGCTC-AGATTGCAGGATC 844
|||||| | ||| | |||||| | |||| | || | || || | ||||||
Sbjct 549 AATTCC-CGAAA---C---AGTAGCCATTCCAGCAACTAATTTATCTGGA--GTAGGATC 599
Query 845 CGGTGCAG--C-CCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTT 901
||||||| | | | | | ||||| |||||||||||||| |||||||||||||||||
Sbjct 600 TGGTGCAGAACTTACAGCTCCTCCTGCCTCTGGAGGACCTAATTCATCTCCTTTGGATTT 659
Query 902 ATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCT 961
||||| |||||| ||||| ||| |||||| |||||||||||| || |||||||| ||
Sbjct 660 GTTTCCCCAGGAAGCAGTTTCTGATGCTGGAGGTGGAGATCTTGGAACGCTTGAATTCCT 719
Query 962 TAGAAACAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCT 1021
||| |||||| |||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 720 CAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCAACCCCCAGATTCT 779
Query 1022 TCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGA 1081
||||| |||||||| || || ||||| || |||||||||||||||||||||||||||||
Sbjct 780 GCAGCCTATGCTTCAAGAGCTCGGAAAACAGAACCCTCAACTTCTGAGGCTAATTCAAGA 839
Query 1082 AAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGG 1141
||||| ||||| |||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 840 GAACCAAGCAGAATTTCTTCAGTTACTAAACGAGCCCTATGAAGGATCTGACGGGGATAT 899
Query 1142 GGACATGTTCGATCAACCCGAGCAAGAAATGCCACATGCCATT-AACGTTACCCCAGCAG 1200
||| || ||||| |||||||||||||||||||| || || | | ||||||||||| | ||
Sbjct 900 GGATATTTTCGACCAACCCGAGCAAGAAATGCCCCACGC-AGTCAACGTTACCCCTGAAG 958
Query 1201 AACAAGAAGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGC-CTTAGTAATAGAA 1259
| |||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||
Sbjct 959 AGCAAGAAGCGATTCAACGGCTTGAGGCAATGGGGTTTGATAGAGCACT-AGTCATAGAA 1017
Query 1260 GCGTTCCTCGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCA 1319
|| ||||| ||||||||||| || || |||||||| || |||||||| | ||| |||||
Sbjct 1018 GCATTCCTTGCATGTGACCGTAACGAGGAATTGGCTGCAAACTATCTGCTAGAGCACTCA 1077
Query 1320 GGTGACTTTGAAGACTGA 1337
| || ||||||||||||
Sbjct 1078 GCAGATTTTGAAGACTGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5