BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79650.4 Length=1635 Score E Sequences producing significant alignments: (Bits) Value Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890 1216 0.0 Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379 680 0.0 > Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890 Length=1098 Score = 1216 bits (658), Expect = 0.0 Identities = 706/730 (97%), Gaps = 0/730 (0%) Strand=Plus/Plus Query 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 369 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTGGTTAGTGGCAGTAGTCTTGA 428 Query 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 429 ACAAATGGTCCAACAGATAATGGAAATGGGAGGCGGAAGTTGGGACAAAGAAACAGTTAC 488 Query 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 489 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATCTGTACTCTGG 548 Query 788 AATTCCTCAAACTGCTGAAGTAGCTGTGCCAGTACCTGAGGCTCAGATTGCAGGATCCGG 847 ||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||||| Sbjct 549 AATTCCTGAAACTGCTGAAGTAGCTGTGGCAGTACCTGGGGCTCAGATGGCAGGATCCGG 608 Query 848 TGCAGCCCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 907 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 TGCAGCCCCTGTCGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 668 Query 908 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAA 967 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 669 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGTGATCTCGGGACACTTGAATTTCTTAGAAA 728 Query 968 CAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGCC 1027 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 729 CAATGACCAGTTCCAACAATTACGCACCATGGTCCACTCCAACCCTCAAATTCTTCAGCC 788 Query 1028 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 1087 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 848 Query 1088 GGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGGGGACAT 1147 |||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct 849 GGCAGAGTTTCTTCAGTTAGTAAACGAGCCCTATGAGGGATCTGACGGGGATGCGGACAT 908 Query 1148 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAACAAGA 1207 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 909 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAGCAAGA 968 Query 1208 AGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCGTTCCT 1267 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 969 GGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCCTTCCT 1028 Query 1268 CGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGTGACTT 1327 |||||||||||| || |||||||||||||||||||||||||||||||||||||| || || Sbjct 1029 CGCATGTGACCGTAACGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGAGATTT 1088 Query 1328 TGAAGACTGA 1337 |||||||||| Sbjct 1089 TGAAGACTGA 1098 Score = 492 bits (266), Expect = 4e-138 Identities = 348/384 (91%), Gaps = 20/384 (5%) Strand=Plus/Plus Query 150 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTTTACCCTCC 209 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTCTACCCTCC 60 Query 210 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAGACAATTATCCA 269 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAAACAATTATCCA 120 Query 270 TGTGGGCAGCAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTG 329 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTGGCCAACAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTC 180 Query 330 GAGAACAAAGTTACGGAGGAAGGATTTCTCGTCGTTATGCTTAGCAAGAGCAAATCTGGA 389 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||| | Sbjct 181 GAGAACAAGGTTACCGAGGAAGGCTTTCTCGTCGTTATGCTTAGCAAGAGCAAAACTGCA 240 Query 390 GGTTCAGCTGGTCAGGCTTCGGTTCAGACTTCTTCTGTTTCACAGCCTGTTTCCGCTACC 449 ||||||||||||||| ||||||||||| | | | || | | |||||||| Sbjct 241 GGTTCAGCTGGTCAGTCTTCGGTTCAG-C--C----G-------GC-T-T--CCGCTACC 282 Query 450 ACATCTTCGACTAAGCCTGCAGCTCCATCTACAACCCAGTCT-TCACCTGTTCCTGCTTC 508 ||||||||||||||||||| | | |||||||||||||||||| | | |||| |||||||| Sbjct 283 ACATCTTCGACTAAGCCTGAAACACCATCTACAACCCAGTCTAT-AGCTGTGCCTGCTTC 341 Query 509 ACCTATTCCTGCTCAAGAACAACC 532 |||||||||||||||||||||||| Sbjct 342 ACCTATTCCTGCTCAAGAACAACC 365 > Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379 Length=1095 Score = 680 bits (368), Expect = 0.0 Identities = 618/738 (84%), Gaps = 19/738 (3%) Strand=Plus/Plus Query 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667 |||||| | |||||||||||| |||||||| ||||| ||||||||||| |||||| |||| Sbjct 369 GGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTTAGTTAGTGGCAGTAGTGTTGA 428 Query 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727 ||| ||||| ||||| |||||||||||||| || || || |||||||||||||||||||| Sbjct 429 GCAGATGGTACAACAAATAATGGAAATGGGGGGAGGCAGCTGGGACAAAGAAACAGTTAC 488 Query 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787 |||||||||||||||||| |||||||| ||||||||||||||||||||| | || ||||| Sbjct 489 TCGTGCACTTCGTGCAGCGTATAACAATCCTGAGAGAGCAGTGGATTATCTATATTCTGG 548 Query 788 AATTCCTC-AAACTGCTGAAGTAGCTGTGCCAGTACCTGA-GGCTC-AGATTGCAGGATC 844 |||||| | ||| | |||||| | |||| | || | || || | |||||| Sbjct 549 AATTCC-CGAAA---C---AGTAGCCATTCCAGCAACTAATTTATCTGGA--GTAGGATC 599 Query 845 CGGTGCAG--C-CCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTT 901 ||||||| | | | | | ||||| |||||||||||||| ||||||||||||||||| Sbjct 600 TGGTGCAGAACTTACAGCTCCTCCTGCCTCTGGAGGACCTAATTCATCTCCTTTGGATTT 659 Query 902 ATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCT 961 ||||| |||||| ||||| ||| |||||| |||||||||||| || |||||||| || Sbjct 660 GTTTCCCCAGGAAGCAGTTTCTGATGCTGGAGGTGGAGATCTTGGAACGCTTGAATTCCT 719 Query 962 TAGAAACAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCT 1021 ||| |||||| |||||||||||||||||| |||||||| |||||||||| || ||||| Sbjct 720 CAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCAACCCCCAGATTCT 779 Query 1022 TCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGA 1081 ||||| |||||||| || || ||||| || ||||||||||||||||||||||||||||| Sbjct 780 GCAGCCTATGCTTCAAGAGCTCGGAAAACAGAACCCTCAACTTCTGAGGCTAATTCAAGA 839 Query 1082 AAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGG 1141 ||||| ||||| |||||||||||| |||| ||||||||||| || ||||||||||| Sbjct 840 GAACCAAGCAGAATTTCTTCAGTTACTAAACGAGCCCTATGAAGGATCTGACGGGGATAT 899 Query 1142 GGACATGTTCGATCAACCCGAGCAAGAAATGCCACATGCCATT-AACGTTACCCCAGCAG 1200 ||| || ||||| |||||||||||||||||||| || || | | ||||||||||| | || Sbjct 900 GGATATTTTCGACCAACCCGAGCAAGAAATGCCCCACGC-AGTCAACGTTACCCCTGAAG 958 Query 1201 AACAAGAAGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGC-CTTAGTAATAGAA 1259 | |||||||||||||||||||| ||||||||||| ||||||||||| || ||| |||||| Sbjct 959 AGCAAGAAGCGATTCAACGGCTTGAGGCAATGGGGTTTGATAGAGCACT-AGTCATAGAA 1017 Query 1260 GCGTTCCTCGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCA 1319 || ||||| ||||||||||| || || |||||||| || |||||||| | ||| ||||| Sbjct 1018 GCATTCCTTGCATGTGACCGTAACGAGGAATTGGCTGCAAACTATCTGCTAGAGCACTCA 1077 Query 1320 GGTGACTTTGAAGACTGA 1337 | || |||||||||||| Sbjct 1078 GCAGATTTTGAAGACTGA 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61287204205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5