BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79660.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927392 jgi|Araly1|927392|scaffold_202953.1 488 2e-137
> Ahg927392 jgi|Araly1|927392|scaffold_202953.1
Length=322
Score = 488 bits (264), Expect = 2e-137
Identities = 300/317 (95%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 109 GGTCTTTTAGAAGATATGGTTCTTGATGGGATTGTATCATCACCATTACGGAGGCCACAT 168
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 6 GGTCTTTTAGAAGTTATGGTTCTTGATGGGATTGTATCATCACCATTGCGGAGGCCACAT 65
Query 169 GCTCTTAAGAAGCAATGGGATGACTTGGGTAGCTGCTC-TACTGTTGTCCAGAGGCATCG 227
||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 66 GCTCTAAAGAAGCAATGGGATGACTTGGGTAGCTGCTCCT-CTGTTGTCCAGAGGCATCG 124
Query 228 TTTCCTTTTGACTGCTATGCTTCTTTTGGCATTCCTCTGCACCATTTATATCTACTTTGC 287
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GTTCCTTTTGACCGCTATGCTTCTTTTGGCATTCCTCTGCACCATTTATATCTACTTTGC 184
Query 288 CGTCACACTAGGCGCTAGGCACTTGT-TGTGCTCAGGGATGACTGGAAAAGACAAGGCAA 346
||||| ||||||||||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 185 TGTCACCCTAGGCGCTAGGCACTTGTCT-TGTTCAGGGATGACTGGCAAAGACAAGGCAA 243
Query 347 TGTGTCAAATGGAACACATCCAAGCCAGTTTCTCCAACGGAAAACTGAAATTCTTCTAGA 406
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 244 TGTGTCAAATGGAACACGTCCAAGCCAGTTTCTCCAAAGGAAAACTGAAATTCTTGTAGA 303
Query 407 GTGTCAGCCTAAGCTGA 423
||||||||||||||||
Sbjct 304 CTGTCAGCCTAAGCTGA 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5