BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79670.1
Length=2431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477143 jgi|Araly1|477143|fgenesh2_kg.2__2273__AT1G79670.2 2026 0.0
Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673 259 6e-68
> Ahg477143 jgi|Araly1|477143|fgenesh2_kg.2__2273__AT1G79670.2
Length=1425
Score = 2026 bits (1097), Expect = 0.0
Identities = 1287/1375 (94%), Gaps = 27/1375 (2%)
Strand=Plus/Plus
Query 827 GCACCGAGCTGTGTTTGTGAGTATGGTAACTTCTCTGGCTTTGGTTACAGTAACTGTTAC 886
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 72 GCACCAAGCTGTGTTTGTGAGTATGGTTACTTCTCTGGCTTTGGTTACAGCAACTGTTAC 131
Query 887 TGCAATCAGATTGGTTACAGAGGGAATCCTTATCTTCCTGGTGGATGCATTGACATTGAC 946
||||||||||||||||||||||||||||| |||||||| ||| || | | || |
Sbjct 132 TGCAATCAGATTGGTTACAGAGGGAATCCATATCTTCC---TGG-TG----G--A-TG-C 179
Query 947 GAATGTGAGGAAGGAAAAGGACTAAGCAGCTGTGGAGAACTAACTTGTGTGAATGTTCCT 1006
|| | |||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 180 --AT-T--GGAAGGAAAAGGACGAAACAGCTGTGGAGAACAAACTTGTGTGAATGTTCCT 234
Query 1007 GGATCGTGGAGGTGCGAGCTGAATGG-AGTAGGGAAGATCAAGCCTCTGTTTCCAGGTCT 1065
||||||||||||||||||| ||| || || | ||||||||||||| |||||| ||||||
Sbjct 235 GGATCGTGGAGGTGCGAGCCGAA-GGAAGCACAGAAGATCAAGCCTGTGTTTCAAGGTCT 293
Query 1066 TGTTCTAGGTTTTCCACTGTTGTTCTTGGTACTTGGGATATGGGGATTGATCAAGTTCGT 1125
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 294 TGTTCTAGGTTTGGCACTATTGTTCTTGGTTCTTGGGATATGGGGATTGATCAAATTCGT 353
Query 1126 TAAGAAGAGAAGGAAGATTATCCGAAAGAGAATGTTCTTTAAACGTAATGGAGGCTTGTT 1185
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TAAGAAGAGAAAGAAGATTATCCGAAAGAGAATGTTCTTTAAACGTAATGGAGGCTTGTT 413
Query 1186 GTTGAAACAACAGTTAACTACAAGAG---GAGGTAATGTGCAGTCATCGAAGATATTCAG 1242
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 414 GTTGAAACAACAGTTAACTACAAGAGAAAGAGGTAATGTGGAGACATCGAAGATATTCAG 473
Query 1243 TTCGAAAGAGCTGGAGAAAGCGACGGATAACTTCAATATGAACAGGGTTCTTGGGCAAGG 1302
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 474 TTCGCAAGAGCTGGAGAAAGCGACGGATAACTTCAACAAGAACAGGGTTCTTGGGCAAGG 533
Query 1303 AGGTCAAGGCACTGTCTACAAAGGAATGTTGGTAGATGGGCGAATTGTTGCTGTGAAAAG 1362
||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 534 AGGTCAAGGCACTGTTTACAAAGGAATGTTGGTAGATGGACGAATCGTCGCTGTGAAAAG 593
Query 1363 ATCTAAAG-TTTTAGATGAAGATAAAGTTGAGGAGTTTATCAATGAAGTTGGTGTTCTCT 1421
||| ||| |||| |||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 594 GTCT-AAGCTTTTGGATGAAGACAAAGTTGAGGAGTTCATCAATGAACTTGGTGTTCTCT 652
Query 1422 CGCAGATTAACCATAGAAATATTGTCAAACTCATGGGGTGTTGTCTCGAGACAGAGGTTC 1481
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 653 CGCAGATTAACCATAGAAACGTTGTCAAACTCATGGGGTGTTGTCTCGAGACAGAGGTTC 712
Query 1482 CTATCTTGGTTTATGAACATATTCCAAATGGAGACCTATTCAAGCGGCTTCACCATGATT 1541
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 713 CTATCTTGGTTTATGAGCATATTCCAAATGGAGACCTATTCAAGCGTCTTCATGATGATT 772
Query 1542 CTGATGATTACACTATGACTTGGGATGTGCGATTGCGCATCT-CTGTTGAGATTGCAGGA 1600
||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 773 CTGATGACTACACTATGACTTGGGATGTGCGATTGCGCAT-TGCTGTTGAGATTGCAGGA 831
Query 1601 GCACTTGCTTACTTGCACTCGGCTGCATCAACTCCGGTCTATCATAGAGATGTCAAGACC 1660
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||
Sbjct 832 GCACTTGCTTACTTGCACTCGGCTGCATCAACCCCGGTCTACCACAGAGACGTCAAGACC 891
Query 1661 ACAAACATACTTTTGGATGAGAAGTATAGAGCCAAGGTATCGGATTTCGGGACCTCGAGA 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 892 ACAAACATACTTTTGGATGAGAAGTATAGAGCCAAGGTATCGGATTTCGGGACTTCGAGA 951
Query 1721 TCCATAAACGTAGATCAAACTCACTTGACTACTCTAGTTGCAGGTACTTTTGGATACTTG 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TCCATAAACGTAGATCAAACTCACTTGACTACTCTAGTTGCAGGTACTTTTGGATACTTG 1011
Query 1781 GATCCAGAGTACTTTCAAACTAGCCAGTTTACGGATAAAAGTGATGTTTATAGTTTTGGG 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GATCCAGAGTACTTTCAAACTAGCCAGTTTACGGATAAAAGTGATGTTTATAGTTTTGGG 1071
Query 1841 GTCGTCTTGGTTGAGCTCATAACTGGAGAAAAGCCGTTTTCTGTAATGCGGCCCGAAGAA 1900
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1072 GTCGTCTTGGTTGAGCTCATAACTGGGGAAAAGCCGTTTTCTGTAATGCGGCCTGAAGAA 1131
Query 1901 AACAGAGGACTTGTGTCTCATTTCAATGAGGCTATGAAACAGAACAGAGTTCTTGATATT 1960
||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1132 AACAGAGGACTTGCGTCTCATTTCATTGAGGCCATGAAACAGAACAGAGTTCTTGATATT 1191
Query 1961 GTTGATTCTCGGATCAAAGAAGGTTGCACGTTGGAACAAGTGTTGGCTGTGGCGAAACTT 2020
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1192 GTTGATTCTCGGATCAAAGAAGATTGCAAGTTGGAACAAGTGTTGGCAGTGGCGAAACTT 1251
Query 2021 GCCAGAAGGTGTTTAAGTCTAAAAGGGAAGAAACGACCAAATATGAGAGAGGTTTCAGTT 2080
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1252 GCCAGAAGGTGTTTAAGTCTAAAAGGGAAGAAACGGCCAAATATGAGAGAGGTTTCAATT 1311
Query 2081 GAGCTTGAGAGGATCCGTTCATCACCCGAAGATTTGGAGTTACATATTGAAGAGGAGGAC 2140
|||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||
Sbjct 1312 GAGCTTGAGAGGATCCGTTCATCACCTGAGGATTTGGAGGTACATATTGAAGAAGAGGAC 1371
Query 2141 GAAGAAGAATGCGCCATGGAAATCAACATGGATGATTCTTGGAGCGTCGACATGA 2195
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1372 GAAGAAGAAC-CGCCATGGAAATCAACATGGATGATTCTTGGAGGGTCGACATGA 1425
Score = 128 bits (69), Expect = 2e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 725 TTTACGGTGATTGAGCTTGGTTGGTACTTTGATACATCAGATTCTCGGTTAACGAATCCT 784
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTACGGTGATTGAGCTTGGATGGTACTTTGATACATCAGATTCTCGGTTAACGAATCCT 60
Query 785 GTGGGTTGTGTG 796
||||||||||||
Sbjct 61 GTGGGTTGTGTG 72
> Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673
Length=2043
Score = 259 bits (140), Expect = 6e-68
Identities = 297/369 (80%), Gaps = 25/369 (7%)
Strand=Plus/Plus
Query 1088 TTCTTGGTACTTGGGA-TATGGGGATTGA-TC-AAGTTCGTTAAG-AAGAGAAGGAAGAT 1143
|||||| || |||||| | | ||| || | || ||||| || || ||| || ||| |||
Sbjct 1097 TTCTTGTTA-TTGGGATTTTCGGG-TT-ATTCAAAGTT-ATT-AGAAAGCGACGGAGGAT 1151
Query 1144 TATCCGAAAG-A-GAATGTTCTTTAAACGTAATGGAGGCTTGTTGTTGAAACAACAGTTA 1201
||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1152 CATCCG-TAGTATGAA-GTTCTTCAAACGTAATGGAGGCTTGTTGTTGAAACAACAGTTA 1209
Query 1202 ACTACAAGAGGA-GGTAATGT-GCAG-TCATCGAAGATATTCAGTTCGAAAGAGCTGGAG 1258
|| |||| || | |||| ||| | || | || || |||||||| |||| |||| |||||
Sbjct 1210 ACAACAAAAG-ACGGTAGTGTCG-AGATG-TCAAAAATATTCAGCTCGAGAGAGTTGGAG 1266
Query 1259 AAAGCGACGGATAACT-TCAATAT-GAACAGGGTTCTTGGGCAAGGAGGTCAAGGCACTG 1316
||||| || ||||||| | | || || || || ||||||||||| |||||||||||||
Sbjct 1267 AAAGCCACTGATAACTAT-AGCATTGAT-AGAGTGCTTGGGCAAGGTGGTCAAGGCACTG 1324
Query 1317 TCTACAAAGGAATGTTGGTAGATGGGCGAATTGTTGCTGTGAAAAGATCTAAAGTTTTAG 1376
| ||||| |||||| | ||||||||| | ||||||||||| |||||||| |||||| | |
Sbjct 1325 TGTACAAGGGAATGCTAGTAGATGGGAGTATTGTTGCTGTTAAAAGATCGAAAGTTGTGG 1384
Query 1377 ATGAAGATAAAGTTGAGGAGTTTATCAATGAAGTTGGTG-TTCTCTCGCAGATTAACCAT 1435
||||||| ||| | || |||||||||||||| || | | ||||||| ||||||||||||
Sbjct 1385 ATGAAGACAAAATGGAAGAGTTTATCAATGAGGTCG-TCCTTCTCTCACAGATTAACCAT 1443
Query 1436 AGAAATATT 1444
|| || |||
Sbjct 1444 AGGAACATT 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91607039225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5