BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79690.1 Length=2720 Score E Sequences producing significant alignments: (Bits) Value Ahg477144 jgi|Araly1|477144|fgenesh2_kg.2__2274__AT1G79690.1 3738 0.0 Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105 195 2e-48 > Ahg477144 jgi|Araly1|477144|fgenesh2_kg.2__2274__AT1G79690.1 Length=2605 Score = 3738 bits (2024), Expect = 0.0 Identities = 2179/2256 (97%), Gaps = 2/2256 (0%) Strand=Plus/Plus Query 250 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTCTGGATTTTTGTGGA 309 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 224 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTTTGGATTTTTGTGGA 283 Query 310 GACTACTCAACAGCTACTTCTCCAACTTCGATCTGATGATAAAGATTCTTGGCCTGGTCA 369 ||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||| || Sbjct 284 GACTAGTCAACAACTACTTCTCCAACTCCGATCTGATGATAAAGATTCGTGGCCTGGACA 343 Query 370 ATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACATCGCTTCTATCTGCACA 429 ||||||||||||||||||||||||||| ||||||| |||| |||||||| |||||||||| Sbjct 344 ATGGGACATCTCTAGTGCTGGCCATATCTCAGCTGCTGATCCATCGCTTATATCTGCACA 403 Query 430 GCGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATCTT 489 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 404 GCGGGAGCTCCAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATATT 463 Query 490 CGTTTTTCTGCAGGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 549 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 TGTTTTTCTGCAAGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 523 Query 550 TGTGTATCTTGTTACTATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 609 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 TGTGTATCTTGTTACAATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 583 Query 610 GGAAGTCTCTGCTGTAAAGTACGTACCTTACGAAGAATACAGAAACTTTCTGTCTAAGGA 669 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 584 GGAAGTCTCTGCTGTAAAATACGTACCTTACGAAGAATACAGAAACTTTCTGGCTAAGGA 643 Query 670 AGATCCTGCTTATGTGCCATATGATGTTAATGGAGAGTATGGAAAACTATTTGACATAAT 729 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 644 AGATCCGGCTTATGTGCCATATGATGTAAATGGAGAGTATGGAAAACTATTTGACATTAT 703 Query 730 CAGACAGAGGTGCCAAGTGAACACTGAGGCCCGTAGTTTATCTCTGCAGAAGCAACTCCA 789 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 704 CAGGCAGAGGTGCCAAGTGAACACTGAGGCACGTAGTTTATCTCTGCAGAAGCAACTCCA 763 Query 790 GAGATATTCTCCAGTCACCCTCGAAGCCAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 849 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 764 GAGATATTCTCCAGTCACCCTTGAAGCAAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 823 Query 850 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAATTATGGACGATATATTCTATGAGCAGGT 909 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 824 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAGTTATGGACGATATATTTTATGAGCAGGT 883 Query 910 TTGGAACAGCAATCCAGCCCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAAAACT 969 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 884 TTGGAACAGCAATCCAGCTCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAGAACT 943 Query 970 GGACAAACTAAAATGGGATTACTTCACGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1029 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 944 GGACAAATTAAAATGGGATTACTTCATGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1003 Query 1030 AAATGAAGCATTCTTGAGTACTGCGGATTCAGCTGTAAAGTTGCTTCCTGGAGCAACAAA 1089 ||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||| Sbjct 1004 AAATGAAGCATTCCTGAGTACGGCGGATTCAGCTGTAATGTTGCTTCCTGGCGCAACAAA 1063 Query 1090 AGCCATAGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1149 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 ATCCATTGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1123 Query 1150 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1124 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1183 Query 1210 CCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGAAG 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1184 TCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGCAG 1243 Query 1270 TGAAGCTAATTTAGATGCTTCTGATCATCTTGCCAGCAGCACAAAGAAGTTACCAGACTC 1329 |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1244 TGAAGCTAATCTAGATGCTTCTGACCATCTTGCCAGCAGCACAAAGAAGTTCCCAGACTC 1303 Query 1330 TAATTCCGATCTGTATAGTATTCCTTATTCAGAGATATATCGACCTTTCCTCAAGAAAGC 1389 ||||||||||||||||| | |||||||||| || |||||||||||| |||||| |||||| Sbjct 1304 TAATTCCGATCTGTATACTGTTCCTTATTCGGAAATATATCGACCTCTCCTCACGAAAGC 1363 Query 1390 TTCTGAA-TTCTTGCAGAAAGCTGGGGACTTGGTCAGTTCGCCAAGTTTGAAGAAGCTAC 1448 ||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1364 TTCTGAACTT-TTGCACAAAGCTGGGGACTTGGTCAGTTCGCCTAGTTTGAAGAAGCTAC 1422 Query 1449 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAGTATTATGAGTCAGACATCGCATGGA 1508 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1423 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAATACTATGAGTCAGACATCGCATGGA 1482 Query 1509 TGGACTTGGATTCAAAGTTAGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1568 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1483 TGGACTTGGATTCAAAGTTGGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1542 Query 1569 TCTTTGGGTATAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACAG 1628 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1543 TCTTTGGGTACAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACGG 1602 Query 1629 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGAGA 1688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1603 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGACA 1662 Query 1689 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1663 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1722 Query 1749 ATTCCGGGGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1808 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1723 ATTCAGGAGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1782 Query 1809 TCGTGAAGGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1868 | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1783 TTGTCAAAGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1842 Query 1869 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGAACAGAGAGGATTAGTTG 1928 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1843 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGACCAGCGAGGATTAGTTG 1902 Query 1929 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1903 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1962 Query 1989 ATACCATAACCCTTCCTGGTGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2048 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1963 ATACCATAACCCTTCCTGATGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2022 Query 2049 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2023 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2082 Query 2109 TCACTAAGGGGTTGCTTTCAAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2168 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2083 TCACTAAGGGTTTGCTTTCGAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2142 Query 2169 GTTGCTTTAGATCGATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2228 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2143 GTTGCTTTCGATCCATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2202 Query 2229 AATTCAACTATTTATATGAAAAAGGAGCCTTCGTGTTCCACGAGGACTCTACATTCTCGG 2288 ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| Sbjct 2203 AATTCAACTATTTATATGAAAAAGGAGCCTTTGTTTTCCACAAGGACTCTACATTCTCGG 2262 Query 2289 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGCCTGAGCCATGAGATACTAACTATTC 2348 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2263 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGTCTGAGCCATGAGATACTAACCATTC 2322 Query 2349 AAGGAAAAGGTGACAAAAACGCAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2408 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2323 AAGGAAAAGGTGACAAAAACGGAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2382 Query 2409 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGCGTTAAGGTACCGGTGGATATATCTC 2468 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2383 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGAGTTAAGGTACCGGTGGATATATCTC 2442 Query 2469 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2504 |||||||||||||||||||||||||||||||||||| Sbjct 2443 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2478 Score = 124 bits (67), Expect = 3e-27 Identities = 73/76 (96%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 175 AGAGAGAGCTATGGCGGAGGAGCACTTCGACGTTCTGACTAAATCCGGTGAGAAGACCGG 234 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 89 AGAGAGAGCAATGGCGGAGGAGCACTTGGACGTTCTGACTAAATCCGGTGAGAAGACCGG 148 Query 235 TGTGTCCAAACCCAGG 250 |||| ||||||||||| Sbjct 149 TGTGACCAAACCCAGG 164 > Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105 Length=753 Score = 195 bits (105), Expect = 2e-48 Identities = 142/159 (89%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 353 GATTCTTGGCCTGGTCAATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACA 412 ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| || Sbjct 168 GATTCATGGCCTGGACAATGGGACATCTCTAGTGCTGGCCATATATCAGATGGTGATCCA 227 Query 413 TCGCTTCTATCTGCACAG----CGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAA 468 |||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 228 TCGCTTTTATCCGCACAGTAAGCGGGAGCTCCAGGAAGAGCTTGGCGTCAAACTCCCAAA 287 Query 469 GGATGCATTTGAAAAGATCTTCGTTTTTCTGCAGGAATG 507 |||||||| |||||||| ||||||||||| |||||||| Sbjct 288 TGATGCATT-GAAAAGATATTCGTTTTTCTACAGGAATG 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102615120030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5