BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79690.1
Length=2720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477144 jgi|Araly1|477144|fgenesh2_kg.2__2274__AT1G79690.1 3738 0.0
Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105 195 2e-48
> Ahg477144 jgi|Araly1|477144|fgenesh2_kg.2__2274__AT1G79690.1
Length=2605
Score = 3738 bits (2024), Expect = 0.0
Identities = 2179/2256 (97%), Gaps = 2/2256 (0%)
Strand=Plus/Plus
Query 250 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTCTGGATTTTTGTGGA 309
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 224 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTTTGGATTTTTGTGGA 283
Query 310 GACTACTCAACAGCTACTTCTCCAACTTCGATCTGATGATAAAGATTCTTGGCCTGGTCA 369
||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 284 GACTAGTCAACAACTACTTCTCCAACTCCGATCTGATGATAAAGATTCGTGGCCTGGACA 343
Query 370 ATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACATCGCTTCTATCTGCACA 429
||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||
Sbjct 344 ATGGGACATCTCTAGTGCTGGCCATATCTCAGCTGCTGATCCATCGCTTATATCTGCACA 403
Query 430 GCGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATCTT 489
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 404 GCGGGAGCTCCAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATATT 463
Query 490 CGTTTTTCTGCAGGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 549
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TGTTTTTCTGCAAGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 523
Query 550 TGTGTATCTTGTTACTATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 609
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGTGTATCTTGTTACAATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 583
Query 610 GGAAGTCTCTGCTGTAAAGTACGTACCTTACGAAGAATACAGAAACTTTCTGTCTAAGGA 669
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 584 GGAAGTCTCTGCTGTAAAATACGTACCTTACGAAGAATACAGAAACTTTCTGGCTAAGGA 643
Query 670 AGATCCTGCTTATGTGCCATATGATGTTAATGGAGAGTATGGAAAACTATTTGACATAAT 729
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 644 AGATCCGGCTTATGTGCCATATGATGTAAATGGAGAGTATGGAAAACTATTTGACATTAT 703
Query 730 CAGACAGAGGTGCCAAGTGAACACTGAGGCCCGTAGTTTATCTCTGCAGAAGCAACTCCA 789
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 704 CAGGCAGAGGTGCCAAGTGAACACTGAGGCACGTAGTTTATCTCTGCAGAAGCAACTCCA 763
Query 790 GAGATATTCTCCAGTCACCCTCGAAGCCAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 849
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 764 GAGATATTCTCCAGTCACCCTTGAAGCAAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 823
Query 850 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAATTATGGACGATATATTCTATGAGCAGGT 909
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 824 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAGTTATGGACGATATATTTTATGAGCAGGT 883
Query 910 TTGGAACAGCAATCCAGCCCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAAAACT 969
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 884 TTGGAACAGCAATCCAGCTCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAGAACT 943
Query 970 GGACAAACTAAAATGGGATTACTTCACGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1029
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 944 GGACAAATTAAAATGGGATTACTTCATGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1003
Query 1030 AAATGAAGCATTCTTGAGTACTGCGGATTCAGCTGTAAAGTTGCTTCCTGGAGCAACAAA 1089
||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 1004 AAATGAAGCATTCCTGAGTACGGCGGATTCAGCTGTAATGTTGCTTCCTGGCGCAACAAA 1063
Query 1090 AGCCATAGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1149
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ATCCATTGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1123
Query 1150 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1183
Query 1210 CCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGAAG 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1184 TCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGCAG 1243
Query 1270 TGAAGCTAATTTAGATGCTTCTGATCATCTTGCCAGCAGCACAAAGAAGTTACCAGACTC 1329
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1244 TGAAGCTAATCTAGATGCTTCTGACCATCTTGCCAGCAGCACAAAGAAGTTCCCAGACTC 1303
Query 1330 TAATTCCGATCTGTATAGTATTCCTTATTCAGAGATATATCGACCTTTCCTCAAGAAAGC 1389
||||||||||||||||| | |||||||||| || |||||||||||| |||||| ||||||
Sbjct 1304 TAATTCCGATCTGTATACTGTTCCTTATTCGGAAATATATCGACCTCTCCTCACGAAAGC 1363
Query 1390 TTCTGAA-TTCTTGCAGAAAGCTGGGGACTTGGTCAGTTCGCCAAGTTTGAAGAAGCTAC 1448
||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1364 TTCTGAACTT-TTGCACAAAGCTGGGGACTTGGTCAGTTCGCCTAGTTTGAAGAAGCTAC 1422
Query 1449 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAGTATTATGAGTCAGACATCGCATGGA 1508
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1423 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAATACTATGAGTCAGACATCGCATGGA 1482
Query 1509 TGGACTTGGATTCAAAGTTAGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1568
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TGGACTTGGATTCAAAGTTGGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1542
Query 1569 TCTTTGGGTATAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACAG 1628
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1543 TCTTTGGGTACAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACGG 1602
Query 1629 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGAGA 1688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1603 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGACA 1662
Query 1689 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1722
Query 1749 ATTCCGGGGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1808
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 ATTCAGGAGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1782
Query 1809 TCGTGAAGGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1868
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 TTGTCAAAGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1842
Query 1869 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGAACAGAGAGGATTAGTTG 1928
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1843 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGACCAGCGAGGATTAGTTG 1902
Query 1929 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1962
Query 1989 ATACCATAACCCTTCCTGGTGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2048
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 ATACCATAACCCTTCCTGATGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2022
Query 2049 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2082
Query 2109 TCACTAAGGGGTTGCTTTCAAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2168
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 TCACTAAGGGTTTGCTTTCGAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2142
Query 2169 GTTGCTTTAGATCGATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2228
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 GTTGCTTTCGATCCATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2202
Query 2229 AATTCAACTATTTATATGAAAAAGGAGCCTTCGTGTTCCACGAGGACTCTACATTCTCGG 2288
||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 2203 AATTCAACTATTTATATGAAAAAGGAGCCTTTGTTTTCCACAAGGACTCTACATTCTCGG 2262
Query 2289 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGCCTGAGCCATGAGATACTAACTATTC 2348
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2263 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGTCTGAGCCATGAGATACTAACCATTC 2322
Query 2349 AAGGAAAAGGTGACAAAAACGCAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2408
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2323 AAGGAAAAGGTGACAAAAACGGAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2382
Query 2409 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGCGTTAAGGTACCGGTGGATATATCTC 2468
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2383 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGAGTTAAGGTACCGGTGGATATATCTC 2442
Query 2469 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2504
||||||||||||||||||||||||||||||||||||
Sbjct 2443 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2478
Score = 124 bits (67), Expect = 3e-27
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 175 AGAGAGAGCTATGGCGGAGGAGCACTTCGACGTTCTGACTAAATCCGGTGAGAAGACCGG 234
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 89 AGAGAGAGCAATGGCGGAGGAGCACTTGGACGTTCTGACTAAATCCGGTGAGAAGACCGG 148
Query 235 TGTGTCCAAACCCAGG 250
|||| |||||||||||
Sbjct 149 TGTGACCAAACCCAGG 164
> Ahg916354 jgi|Araly1|916354|Al_scaffold_0008_1105
Length=753
Score = 195 bits (105), Expect = 2e-48
Identities = 142/159 (89%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 353 GATTCTTGGCCTGGTCAATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACA 412
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 168 GATTCATGGCCTGGACAATGGGACATCTCTAGTGCTGGCCATATATCAGATGGTGATCCA 227
Query 413 TCGCTTCTATCTGCACAG----CGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAA 468
|||||| |||| |||||| |||||||| |||||||||||||||| |||||||||||
Sbjct 228 TCGCTTTTATCCGCACAGTAAGCGGGAGCTCCAGGAAGAGCTTGGCGTCAAACTCCCAAA 287
Query 469 GGATGCATTTGAAAAGATCTTCGTTTTTCTGCAGGAATG 507
|||||||| |||||||| ||||||||||| ||||||||
Sbjct 288 TGATGCATT-GAAAAGATATTCGTTTTTCTACAGGAATG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102615120030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5