BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79700.2
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477146 jgi|Araly1|477146|fgenesh2_kg.2__2276__AT1G79700.2 1474 0.0
Ahg471806 jgi|Araly1|471806|fgenesh2_kg.1__1760__AT1G16060.1 531 5e-150
> Ahg477146 jgi|Araly1|477146|fgenesh2_kg.2__2276__AT1G79700.2
Length=977
Score = 1474 bits (798), Expect = 0.0
Identities = 943/1007 (94%), Gaps = 34/1007 (3%)
Strand=Plus/Plus
Query 40 ATCTTTTATTCTTCTCATTCACCGGTAATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACA 99
||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATCCTTTATTATTCTCATTCACCGGTAATGGCAAAAGTCTCTCGGAGGAGCAAGAAAACA 60
Query 100 ATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTG-C 158
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 61 ATCGTTGAAGATGAAATCAGCGATAAAACAGCGTCTGCATCTGAGGCTGCGTCCATTGTC 120
Query 159 CTTAACATCCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTC 218
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTTAA-ATCCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCCTCAACGCAGCTC 179
Query 219 CCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGTGGGA 278
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCTTATAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGTGGGA 239
Query 279 TAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTA 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGACAAGTTTATCTAGGGGCTTA 299
Query 339 CGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAGTACTGGGGACG 398
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTGGCAGCATTGAAGTACTGGGGACG 359
Query 399 AGACACACTCTTGAACTTCCCTTTGCCGAGTTATGACGAAGACGTCAAAGAAATGGAAGG 458
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 360 AGACACACTCTTGAACTTCCCTTTGCTGACTTATGACGAAGACGTCAAAGAAATGGAAGG 419
Query 459 CCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGAGG 479
Query 519 TGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGCTAGAAT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGCTAGAAT 539
Query 579 TGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGC 599
Query 639 AGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTACCAATTT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTACCAATTT 659
Query 699 CGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAA 758
||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 660 CGACGTCAGCCGTTATCTAAACCCTAACGCCGCCG---AT--------T-C---T---AA 701
Query 759 GCCCATTCGAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATC 818
||| ||||||| | || | |||||||||||||||||||||||||||||||||||
Sbjct 702 GCCAATTCGAA-----A--CG--ATCCCGAATCGTCGGATGATAACAAATCTCCGAAATC 752
Query 819 AGAGGAAGTAATCGAACCATCTACATCGCCGGAAG-TGATTCCAACTCGCCGGAGCTTCC 877
||||||| |||||||||||||||||||||| |||| | ||| |||||||||||||||| |
Sbjct 753 AGAGGAAATAATCGAACCATCTACATCGCCTGAAGCT-ATTACAACTCGCCGGAGCTTTC 811
Query 878 CCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAG 937
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 812 CCGACGATATCCAGACGTATTTTGGGTGTCAAGACTCCGGCAAGTTAGCGACGGAGGAAG 871
Query 938 ACGTAATATTCGATTGTTTCAATTC-TTATATAAATCCTGGCTTCTATAACGAGTTTGAT 996
|||| || |||| | |||| ||||| || ||||||||||| ||||||||||||||||||
Sbjct 872 ACGTTATTTTCGGTGGTTTGAATTCATTC-ATAAATCCTGGTTTCTATAACGAGTTTGAT 930
Query 997 TATGGACCTTAATCGTATTT-TCTACAAGTTTTGTTTTGATTATCTA 1042
|||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 931 TATGGACCTTAATCGTATTTCTTTACAAGTTTTGTTTTGATTATCTA 977
> Ahg471806 jgi|Araly1|471806|fgenesh2_kg.1__1760__AT1G16060.1
Length=1196
Score = 531 bits (287), Expect = 5e-150
Identities = 454/533 (85%), Gaps = 18/533 (3%)
Strand=Plus/Plus
Query 193 CGAAACGCTCCTCTTCAACGCAGCTCCCCT-TACAGAGGCGTCACAAGGCATAGATGGAC 251
||| ||||||||| |||||||||| || | | ||||||||||| |||||| |||||||
Sbjct 185 CGAGACGCTCCTCCACAACGCAGCT-CCGTCCATAGAGGCGTCACCAGGCATCGATGGAC 243
Query 252 TGGGAGATACGAAGCGCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAA 311
||| || |||||||| ||||| ||||||||||| || |||||||| || |||| ||||||
Sbjct 244 TGGAAGGTACGAAGCACATTTATGGGATAAGAATAGTTGGAACGAGACTCAGAGCAAGAA 303
Query 312 AGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCCTACGA 371
| | | ||| | | |||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 304 A-G--G--AAG---A-CAAGGGGCATATGACGAGGAAGATGCAGCAGCACGTGCCTACGA 354
Query 372 CTTAGCAGCATTGAAGTACTGGGGACGAGACAC-ACTCTTGAACTTCCCTTTGCCG-AGT 429
||||||||||||||| || |||||||||||||| | ||||||| ||||||||| | |
Sbjct 355 CTTAGCAGCATTGAAATATTGGGGACGAGACACCA-TCTTGAATTTCCCTTTGT-GTAAC 412
Query 430 TATG-ACGAAGACGTCAAAGAAATGGAAGGCCAATCCAAGGAAGAGTATATTGGATCATT 488
|||| | |||||| |||| ||||||||| |||| || |||||||||||||||||||| ||
Sbjct 413 TATGGA-GAAGACATCAAGGAAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTT 471
Query 489 GAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCA 548
|||||| ||||||||||| || || || |||||||||||||| ||||||||||||| |||
Sbjct 472 GAGAAGGAAAAGTAGTGGGTTCTCACGTGGTGTATCAAAATATAGAGGCGTTGCAAAGCA 531
Query 549 TCACCATAATGGGAGATGGGAAGCTAGAATTGGAAGGGTGTTTGGTAATAAATATCTATA 608
||||||||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||
Sbjct 532 TCACCATAATGGGAGATGGGAAGCTCGAATTGGAAGAGTCTTTGGCAATAAATATTTATA 591
Query 609 TCTTGGAACATACGCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATAGA 668
|||||||| ||||| || ||||||||||| || || || || || ||||| ||||| ||
Sbjct 592 CCTTGGAACTTACGCTACACAAGAAGAAGCGGCTATAGCGTATGATATCGCAGCAATCGA 651
Query 669 GTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCT-AAAC 720
|||||||||||||||||||||||| || |||||| ||||||||||||| ||||
Sbjct 652 GTACCGTGGACTTAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAAC 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5