BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79710.1
Length=2585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477147 jgi|Araly1|477147|fgenesh2_kg.2__2277__AT1G79710.1 2473 0.0
Ahg927399 jgi|Araly1|927399|scaffold_202960.1 1214 0.0
> Ahg477147 jgi|Araly1|477147|fgenesh2_kg.2__2277__AT1G79710.1
Length=1523
Score = 2473 bits (1339), Expect = 0.0
Identities = 1443/1495 (97%), Gaps = 0/1495 (0%)
Strand=Plus/Plus
Query 21 AATGGCCAATCGATCGGAGGAAGCAGAGTACGAGAACGATTCTCGGCGAAATCATCAAGA 80
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 29 AATGGCTAATCGATCGGAGGAAGCAGAGTACGAGAACGATTCTCGGAGAAATCACCAAGA 88
Query 81 CAAGAAGAAAGAAGGAGTTTTAGATCTGGTACTGAAACGACCTTTACGGTGGCTAAGAAT 140
|||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||
Sbjct 89 CAAGAAGAAAGAAGGAGTTTTAGATCTGGTGTTGAAACGGCCTATACGGTGGTTAAGAAT 148
Query 141 GCTCATCGAAGAGCTTCACTGGAGCTTCTTCTTCGGTGTGATTATCGTCTATGGAGTTAG 200
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 149 GCTCATTGAAGAGCTTCACTGGAGCTTCTTCTTCGGTGTGATTGTCGTCTATGGAGTTAG 208
Query 201 CCAAGGACTTGGTAAAGGTCTCAGCAAAGTCAGCACACAGTACTACTTCAAAGACGAGCA 260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 209 CCAAGGACTTGGTAAAGGTCTCAGCAAAGTCAGCACTCAGTACTACTTCAAAGACGAGCA 268
Query 261 GAAGATACAACCCTCTCAAGCTCAGATTTACGTTGGTTTGATTCAGATTCCTTGGATTAT 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 269 GAAGATACAACCCTCTCAAGCTCAGATTTATGTTGGTTTGATTCAGATTCCTTGGATCAT 328
Query 321 TAAACCTCTCTGGGGATTGTTGACTGATGTTGTCCCAGTTTTGGGTTACAGGAGACGACC 380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 329 TAAACCTCTCTGGGGATTGTTGACTGATGTTGTCCCAGTTTGGGGTTACAGGAGACGACC 388
Query 381 CTATTTCATATTAGCCGGTTTTCTTGCTATGATCTCCATGATGGTGTTATGGCTTCACAC 440
||||||| |||| || ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 389 CTATTTCGTATTCGCTGGTGTTCTTGCTATGATTTCCATGATGGTTTTATGGCTTCACAC 448
Query 441 GAATCTGCATCTTGCACTGGCTTTGTCCTGTCTTGTGGCAGGAAGTGCTGGAGTTGCTAT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GAATCTGCATCTTGCACTGGCTTTGTCCTGTCTTGTGGCAGGAAGTGCTGGAGTTGCTAT 508
Query 501 AGCAGATGTAACTATTGATGCTTGTGTGACACAATGTAGCATAAGCCATCCTACACTTGC 560
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 509 AGCAGATGTAACCATTGATGCTTGTGTGACACAATGCAGCATAAGCCATCCTACACTTGC 568
Query 561 TGCAGATATGCAAAGTTTGTGTGGTTTGTGTTCTTCGATTGGTTCCTTGGTTGGTTTCTC 620
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 569 TGCAGATATGCAAAGTTTGTGTGGTTTGAGTTCATCCATTGGTTCCTTGGTTGGTTTCTC 628
Query 621 CCTTAGCGGCGTTTTGGTGCACTTGGTTGGGTCCAAAGGTGTGTACGGTTTACTCGGTGT 680
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 629 CCTTAGTGGCATTTTGGTGCACTTGGTTGGGTCCAAGGGTGTGTACGGTTTACTCGGTGT 688
Query 681 GACGGCAGGATTGCTTGTTGTGGTTGGGATGGTTCTGAAAGAATCTCCTTCTCGCAGTCT 740
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 689 GACTGCAGGATTGCTTGTTGTGGTTGGGATGGTTCTTAAAGAATCTCCTTCTCGCAGTCT 748
Query 741 AGGTCGCAAGCATGTTAACGACAAGTTTCTGGATGCTGGAAGTGCAATATGGAAAACCTT 800
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGGTCGCAAGCATGTTAACGAGAAGTTTCTGGATGCTGGAAGTGCAATATGGAAAACCTT 808
Query 801 TCAATATGGTGAGGTGTGGCGACCATGCTTGTTCATGCTATTGTCAGCTGCAGTGAGCTT 860
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 809 TCAATATGGTGAGGTGTGGCGACCATGCTTGTTCATGCTATTGTCTGCTGCAGTGAGCTT 868
Query 861 GCACATTCACGAAGGCATGTTCTATTGGTACACGGATTCAAAGGATGGCCCTTCCTTTTC 920
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 869 GCACATTCACGAAGGCATGTTCTATTGGTACACAGATTCAAAAGATGGTCCTTCCTTTTC 928
Query 921 AAAGGAAGCCGTTGGATCCATTATGTCGTTTGGTGCAATTGGCTCTCTTGTGGGAATACT 980
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 929 AAAGGAAGCTGTTGGATCCATTATGTCGTTTGGTGCAATCGGCTCTCTCGTGGGCATACT 988
Query 981 TCTCTATCAGAACTTTCTGAAGAACTTCCCTTTCAGGAATGTCGTCTTCTGGGCACTTTC 1040
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 989 TCTCTATCAGAACTTTCTGAAGAACTTCCCTTTCCGGAATGTCGTTTTCTGGGCACTTTC 1048
Query 1041 CCTATCTGTCCTGTCAGGATTTCTGGATTTAATCCTGGTGCTGCGCATAAATCTGAAGCT 1100
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1049 CCTATCTGTCCTGTCAGGACTTCTGGATTTGATCCTGGTGCTGCGCATAAATCTGAAGCT 1108
Query 1101 TGGTCTCCCTGATTACTTCTTTATTGTGGTAGATGAGTTTGTTTCACATATGATAAGTAG 1160
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TGGTGTCCCTGATTACTTCTTTATTGTGGTAGATGAGTTTGTTTCACATATGATAAGTAG 1168
Query 1161 AATCAAGTGGTTACCCTTACTTGTTCTCAGCTCCAAGCTCTGCCCTGCCGGTATGGAAGG 1220
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1169 AATCAAGTGGTTACCCTTACTTGTTCTCAGTTCCAAGCTCTGCCCTGCCGGTATGGAAGG 1228
Query 1221 CACTTTCTTTGCTTTGCTCATGTCTATTGAACATATAGGACATCTAGTGTCGTCATGGGG 1280
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1229 CACTTTCTTTGCTTTGCTCATGTCTATTGAACATGTAGGACATCTAGTGTCGTCATGGGG 1288
Query 1281 CGGAGGAGTACTACTCCATGCCCTGAAAGTTACGCGTACTCAGTTTGATAATCTCTGGTT 1340
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1289 CGGAGGAGTATTACTCCATGCCCTGAAAGTCACGCGTACTCAGTTTGATAATCTCTGGTT 1348
Query 1341 GGTTATTGTGATCAGGAGTTTATTGAGGGTAATCCCAATTGGATTGGTCTTTTTGATACC 1400
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1349 GGTTATTGTGATCAGGAGTTTATTGAGGGTAATTCCAATTGGATTGGTCTTTTTGATACC 1408
Query 1401 AAATGTTGATTCAAACTCAACCATTCTCCCTGCTGAGATGTTAACAAGTAGAATAAGTGA 1460
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1409 AAATGTTGATTCAAACTCAACCATTCTCCCGGCTGAGATGTTAACAAACAGAATAAGTGA 1468
Query 1461 AGGTGTTGATACCGAGAAGATAGAGATGACCGCTCTGATCAGTGATGAAGCTTGA 1515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 AGGTGTTGATACCGAGAAGATAGAGATGACCGCTCTGATCAGTGATGAAGCTTGA 1523
> Ahg927399 jgi|Araly1|927399|scaffold_202960.1
Length=1511
Score = 1214 bits (657), Expect = 0.0
Identities = 780/837 (93%), Gaps = 17/837 (2%)
Strand=Plus/Minus
Query 1753 CACACAAATGGATATTAAGTTATGGTGTAGGCATCAGACTCTGCAGTTTTCTCC-GACAA 1811
|||||||| |||||||||||||||||||||| | | ||||||||||||| | |||
Sbjct 1509 CACACAAA-GGATATTAAGTTATGGTGTAGG---C--A---TGCAGTTTTCTCCTG-CAA 1460
Query 1812 TTCCTAGCCTCTCTTGTGTGGTATCATATATTACTCTCTGGTTTTTCTGCTGATAATTTC 1871
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1459 TTCCTAGCCTCTCTTGTGTGGTATCATATATTACTCTCTGGTTTTTCTGCTGGTAATTTC 1400
Query 1872 CGATGATCCCGACTTCATTTTCATATGACAGACTTGCTAAGGCCAAGCAGACTAGAGATG 1931
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1399 CGATGATCCCGACTTCATTTTCATATGACAGACTTGCCAAGGCCAAACAGACTAGAGATG 1340
Query 1932 CGTCAGGCTTGACAAAGTAGAACACACCAGTGACATCCACTTCGAGCTCAGCGTTACCTT 1991
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1339 CATCAGGCTTGACAAAGTAGAACACACCGGTGACATCAACTTCGAGCTCAGCGTTACCTT 1280
Query 1992 GGAAGATCATTTTGATAATGGGAATGCTTATGTCTTCATAACTTGTGAGGTTAAAGCAAG 2051
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1279 CGAAGATCATTTTGATAGTGGGAATGCTAATGTCTTCATAACTTGTGAGGTTAAAGCAAG 1220
Query 2052 TGTCTAAGATTGAATAACCAGGAGCAGTAGGAAACCCGGAAAACTGTTTCAGAAACTCTA 2111
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1219 TGTCTAAGATTGAATAGCCAGGAGTTGAAGGAAACCCGGAAAACTGTTTCAGAAACTCTG 1160
Query 2112 TCTTCACAGCTTTGTAAATGGAAGGTGGCAATCTTGTGATAACCGTTCCTGAATCGATTA 2171
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1159 TCTTCACCGCTTTGTAAATGGAAGGTGGCAATCTCGTGATGACCGTTCCTGAATCGATTA 1100
Query 2172 GAATCCCTCTGCCAAAGCTTGAAGATTTCAGTTCCACGCCACCAATGCTAGCACCAGTGA 2231
|||||||||| ||||||||| ||| |||||| |||| |||||||||||||||||||||||
Sbjct 1099 GAATCCCTCTACCAAAGCTTAAAGTTTTCAGCTCCATGCCACCAATGCTAGCACCAGTGA 1040
Query 2232 GATTCAGAATGTAAAAGGAACGAAGCTGAGGGTTTTGTACTAACGGCGTGTAGGAAACTG 2291
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1039 GATTCAGAATGTAAAAGGAACGAAGCTGAGGGTTTTGTACTAGCGGCGTGTAGGAAACTG 980
Query 2292 AAGTTGAATTCGTGTAAACAGAGGAATCGTTACC-AAAGGACAATG-AGCCAGAAGCTCC 2349
||||||||||| |||||||||| |||| ||||| |||| |||||| | |||||||||||
Sbjct 979 AAGTTGAATTCTTGTAAACAGAAAAATCATTACCGAAAG-ACAATGTA-CCAGAAGCTCC 922
Query 2350 ATCCTCAAGAGAAGGTAAACAGTATGAGAAAACTCCGTTGAAAGTTTTCAAAGTTTGGGA 2409
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 921 ATCCTCAAGAGAAGGTAGACAGTATGAGAACACTCCGTTGAAAGTTTTCAAAGTCTGGGA 862
Query 2410 GACTAAAGAGACTGAACTTCTTCCCAAACCCATTAAACCAGAGGATCCCCCAAACAGACC 2469
||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 861 GACTAAAGAAACTGAGCTTCTGCCCAAACCCATTAGACCAGAGGCTCCCCCAAACAGACC 802
Query 2470 TTTGTTGTTTCGGCCACAACCAAAGACAA-AGTTTTCAAGTTTTGTGTCGCCCAATAGGA 2528
||| ||||||||||||||||||||||||| | ||||| |||||||||||||| |||| ||
Sbjct 801 TTTATTGTTTCGGCCACAACCAAAGACAAGA-TTTTCGAGTTTTGTGTCGCCTAATATGA 743
Query 2529 TGCTTTCACTTGCCAAGTCTCCTCGAGTGTATGATCCATCTCCATAGCTGACAACGT 2585
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TGCTTTCACTGGCCAAGTCTCCTCGAGTGTATGATCCATCTCCATAGCTGACAACGT 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97472936955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5