BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79720.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927399 jgi|Araly1|927399|scaffold_202960.1 2200 0.0
> Ahg927399 jgi|Araly1|927399|scaffold_202960.1
Length=1511
Score = 2200 bits (1191), Expect = 0.0
Identities = 1387/1479 (94%), Gaps = 23/1479 (2%)
Strand=Plus/Plus
Query 111 CATTGAATCTTTCACTTGCTCCTTTGCTACTTGTTTTTCTTTTCCTTCTCTCGTGTGTTG 170
|||| ||||||||||| ||||||||||| |||||| || |||||||||||| ||||||||
Sbjct 47 CATTAAATCTTTCACTAGCTCCTTTGCTTCTTGTTCTTATTTTCCTTCTCTTGTGTGTTG 106
Query 171 TTCATGGCGTCGATGAGAAGAAGATTCTCAGTGTACATAACAACATCTGGTCTCCCAAGA 230
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 107 TTCATGGCGTCGACGAGAAGAAGATTCTCAGTGTACACAACAACATCTGGTCTCCCAAGA 166
Query 231 AATCATACGAAGCTTCAACTTCATGTTTTTCTCGCAGTCTTGGAAAAGGAAGAGAATCCA 290
|||| || |||||||| | ||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 167 AATCGTATGAAGCTTCGAGTTCATGTTTCTCTCGAAGTCTTGGAAAAGGAAGAGATTCCA 226
Query 291 CTACATTGGAGATGAAACATAGAGAACTTTGCTCAGGAAAGACTATAGATTTGGGTAAGA 350
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 227 CTACATTAGAGATGAAACATAGAGAACTTTGCTCAGGAAAGACTATAGATTGGGGTAAGA 286
Query 351 AGATGAGAAGAGCCTTAG-TT-TTGGATAACATTCGAGTTCAGTCACTTCAACTCAAAAT 408
|||||||||||||||| | || || ||||||||||||||||||||||||||||||| |||
Sbjct 287 AGATGAGAAGAGCCTT-GCTTCTT-GATAACATTCGAGTTCAGTCACTTCAACTCAGAAT 344
Query 409 CAAAGCAATGACCTCAAGCACCACTGAACAATCTGTTTCCGAAACTCAGATTCCGTTAAC 468
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 345 CAAAGCAATGACCTCAAGCACCACTGAACAATCTCTTTCCGAAACTCAGATTCCGTTAAC 404
Query 469 CTCAGGGATAAAACTTGAGTCTTTGAACTACATCGTTACAGTTGAATTAGGAGGGAAAAA 528
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CTCAGGGATAAAACTTGAGACTTTGAACTACATCGTTACAGTTGAATTAGGAGGGAAAAA 464
Query 529 CATGAGTTTGATCGTTGACACTGGAAGTGACCTGACTTGGGTCCAATGCCAGCCTTGCAG 588
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 465 CATGAGTTTGATCGTTGACACTGGAAGTGACTTGACTTGGGTCCAGTGCCAGCCTTGCAG 524
Query 589 ATCCTGTTACAACCAACAAGGTCCTTTGTATGACCCATCAGTCTCATCTTCTTACAAGAC 648
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 525 ATCCTGTTACAACCAACAAGGTCCTTTGTATGACCCATCAGTCTCTTCTTCTTACAAGAC 584
Query 649 GGTGTTCTGTAACTCATCCACTTGTCAGGACCTTGTGGCAGCTACCAGCAATTCCGGCCC 708
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 585 AGTGTTCTGTAACTCATCCACTTGTCAGGACCTTGTAGCAGCTACCGGCAATTCAGGCCC 644
Query 709 TTGTGGAGG-TAACAATGGTGTTGTAAAGACACCTTGTGAGTACGTTGTCAGCTATGGAG 767
||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 645 TTGTGGAGGATT-CAATGGTGTTGTAAAGACAACTTGTGAGTACGTTGTCAGCTATGGAG 703
Query 768 ATGGATCATACACTCGAGGAGACTTGGCAAGTGAAAGCATCCTATTGGGCGACACAAAAC 827
|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 704 ATGGATCATACACTCGAGGAGACTTGGCCAGTGAAAGCATCATATTAGGCGACACAAAAC 763
Query 828 TTGAAAA-CTTTGTCTTTGGTTGTGGCCGAAACAACAAAGGTCTGTTTGGGGGATCCTCT 886
| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 764 TCGAAAATCTT-GTCTTTGGTTGTGGCCGAAACAATAAAGGTCTGTTTGGGGGAGCCTCT 822
Query 887 GGTTTAATGGGTTTGGGAAGAAGTTCAGTCTCTTTAGTCTCCCAAACTTTGAAAACTTTC 946
||| ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 823 GGTCTAATGGGTTTGGGCAGAAGCTCAGTTTCTTTAGTCTCCCAGACTTTGAAAACTTTC 882
Query 947 AACGGAGTTTTCTCATACTGTTTACCTTCTCTTGAGGATGGAGCTTCTGGCT-CATTGTC 1005
|||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 883 AACGGAGTGTTCTCATACTGTCTACCTTCTCTTGAGGATGGAGCTTCTGG-TACATTGTC 941
Query 1006 CTTT-GGTAACGATTCCTCTGTTTACACGAATTCAACTTCAGTTTCCTACACGCCGTTAG 1064
||| ||||| |||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 942 -TTTCGGTAATGATTTTTCTGTTTACAAGAATTCAACTTCAGTTTCCTACACGCCGCTAG 1000
Query 1065 TACAAAACCCTCAGCTTCGTTCCTTTTACATTCTGAATCTCACTGGTGCTAGCATTGGTG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TACAAAACCCTCAGCTTCGTTCCTTTTACATTCTGAATCTCACTGGTGCTAGCATTGGTG 1060
Query 1125 GCGTGGAACTGAAATCTTCAAGCTTTGGCAGAGGGATTCTAATCGATTCAGGAACGGTTA 1184
|| |||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1061 GCATGGAGCTGAAAACTTTAAGCTTTGGTAGAGGGATTCTAATCGATTCAGGAACGGTCA 1120
Query 1185 TCACAAGATTGCCACCTTCCATTTACAAAGCTGTGAAGATAGAGTTTCTGAAACAGTTTT 1244
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1121 TCACGAGATTGCCACCTTCCATTTACAAAGCGGTGAAGACAGAGTTTCTGAAACAGTTTT 1180
Query 1245 CCGGGTTTCCTACTGCTCCTGGTTATTCAATCTTAGACACTTGCTTTAACCTCACAAGTT 1304
||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1181 CCGGGTTTCCTTCAACTCCTGGCTATTCAATCTTAGACACTTGCTTTAACCTCACAAGTT 1240
Query 1305 ATGAAGACATAAGCATTCCCATTATCAAAATGATCTTCCAAGGTAACGCTGAGCTCGAAG 1364
|||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1241 ATGAAGACATTAGCATTCCCACTATCAAAATGATCTTCGAAGGTAACGCTGAGCTCGAAG 1300
Query 1365 TGGATGTCACTGGTGTGTTCTACTTTGTCAAGCCTGACGCATCTCTAGTCTGCTTGGCCT 1424
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1301 TTGATGTCACCGGTGTGTTCTACTTTGTCAAGCCTGATGCATCTCTAGTCTGTTTGGCCT 1360
Query 1425 TAGCAAGTCTGTCATATGAAAATGAAGTCGGGATCATCGGAAATTATCAGCAGAAAAACC 1484
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1361 TGGCAAGTCTGTCATATGAAAATGAAGTCGGGATCATCGGAAATTACCAGCAGAAAAACC 1420
Query 1485 AGAGAGTAATATATGATACCACACAAGAGAGGCTAGGAATTGTC-GGAGAAAACTGCAGA 1543
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1421 AGAGAGTAATATATGATACCACACAAGAGAGGCTAGGAATTG-CAGGAGAAAACTGCA-- 1477
Query 1544 GTCTGATGCCTACACCATAACTTAATATCCATTTGTGTG 1582
| | |||||||||||||||||||||| ||||||||
Sbjct 1478 -T--G---CCTACACCATAACTTAATATCC-TTTGTGTG 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5